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Revision 1.23 - (hide annotations) (download) (as text)
Tue Mar 16 15:43:05 2004 UTC (15 years, 4 months ago) by afe
Branch: MAIN
Changes since 1.22: +9 -18 lines
File MIME type: application/x-tex
o cleaned up LaTeX functions, removed spurious space generators

1 afe 1.23 % $Header: /u/u3/gcmpack/manual/manual.tex,v 1.22 2004/03/15 22:39:28 afe Exp $
2 adcroft 1.2 % $Name: $
3 adcroft 1.1
4     \documentclass[12pt]{book}
5    
6 adcroft 1.8 %To help cross-reference
7     %\usepackage{showlabels}
8    
9     %aja%\usepackage{amsfonts}
10 adcroft 1.1 \usepackage{amsmath}
11 cnh 1.7 \usepackage{html}
12 cnh 1.19 \usepackage{hthtml}
13 adcroft 1.10 \usepackage{graphicx}
14 adcroft 1.8
15     %cnh%\usepackage{array}
16     %cnh%\usepackage{multirow}
17 cnh 1.12
18 edhill 1.16 %eh3 Commands to reference either files or symbols within the "HTML-ized"
19     %eh3 ("vdb") code.
20     %eh3
21 afe 1.23 %afe seems like these need to be long, sorry
22     \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
23     \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
24 afe 1.22
25     % afe Commands to standardize typesetting
26 afe 1.23 \newcommand{\file}[1]{\texttt{#1}}
27    
28     \newcommand{\sectiontitle}[1]{\textsl{#1}}
29    
30     \newcommand{\code}[1]{\texttt{#1}}
31 afe 1.22
32    
33 cnh 1.12
34 edhill 1.18 %eh3 try out the epsfig package
35     \usepackage[dvips]{epsfig}
36     \def\scalefig#1{\epsfxsize #1\textwidth}
37 cnh 1.12
38 adcroft 1.8
39     %ph%\usepackage{epsfig}
40     %ph%\usepackage{psfrag}
41     %ph%\usepackage{oldgerm}
42    
43 adcroft 1.2 % I commented the following because it introduced excessive white space
44 adcroft 1.8 %aja%\usepackage{palatcm} % better PDF
45 adcroft 1.1
46     % page headers and footers
47 adcroft 1.8 %cnh%\usepackage{fancyhdr}
48 adcroft 1.2 %\pagestyle{fancy}
49 adcroft 1.8 %cnh%\fancyhead{}
50     %cnh%\fancyhead[LO]{\slshape \rightmark}
51     %cnh%\fancyhead[RE]{\slshape \leftmark}
52     %cnh%\fancyhead[RO,LE]{\thepage}
53     %cnh%\fancyfoot[CO,CE]{\today}
54     %cnh%\fancyfoot[RO,LE]{ }
55     %cnh%\renewcommand{\headrulewidth}{0.4pt}
56     %cnh%\renewcommand{\footrulewidth}{0.4pt}
57 adcroft 1.1
58 heimbach 1.5 % bibtex stuff
59 adcroft 1.10 %aja%\newcommand{\BIBPATH}{.}
60     %aja%\usepackage{natbib}
61     %aja%\bibliographystyle{\BIBPATH/jmr_my}
62     %aja%\gdef\harvardleft{[}
63     %aja%\gdef\harvardright{]}
64     %aja%\bibpunct{[}{]}{,}{a}{}{,}
65     \bibliographystyle{plain}
66 heimbach 1.5
67 adcroft 1.1 % referencing
68 adcroft 1.8 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
69     %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
70     %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
71     %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
72     %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
73     %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
74 adcroft 1.1
75     % stuff for psfrag
76 adcroft 1.8 %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
77     %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
78 adcroft 1.1
79 adcroft 1.3 % This allows numbering of subsubsections
80     \setcounter{secnumdepth}{3}
81     % This changes the the chapter title
82     %\renewcommand{\chaptername}{Section}
83    
84 adcroft 1.11
85     % This allows hyperlinks in PDF
86     % hyperref package and colors for hyperref package
87     \usepackage{color}
88     \usepackage[dvips]{hyperref}
89     \definecolor{darkgreen}{rgb}{0,0.4,0}
90     \definecolor{darkblue}{rgb}{0,0,0.4}
91     \definecolor{darkred}{rgb}{0.5,0,0}
92     \hypersetup{breaklinks=true,
93     colorlinks=true,
94     linkcolor=darkgreen,
95     citecolor=darkblue,
96     pagecolor=darkred,
97     pdftitle={MITgcm Release 1 Documentation},
98 edhill 1.15 pdfauthor={MITgcm-support@mitgcm.org},
99 adcroft 1.11 pdfkeywords={oceanography, ocean model, general circulation model,
100     non-hydrostatic, finite volume, inverse methods, adjoint method}
101     }
102 molod 1.17
103     % Some definitions (AMM)
104     \def\p#1{{\partial \over {\partial #1}}}
105     \def\pp#1#2{{\partial #1 \over {\partial #2}}}
106     \def\dd#1#2{{d #1 \over {d #2}}}
107     \def\bq{\begin{equation}}
108     \def\bqa{\begin{eqnarray}}
109     \def\eq{\end{equation}}
110     \def\eqa{\end{eqnarray}}
111    
112     \def\h{ {1\over2} }
113     \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
114     \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
115    
116     \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
117    
118 adcroft 1.1
119     \begin{document}
120 cnh 1.9
121     \bodytext{bgcolor="#FFFFFFFF"}
122 adcroft 1.1
123     \tableofcontents
124 adcroft 1.10 %\pagebreak
125 adcroft 1.1
126 adcroft 1.10 %\part{MIT GCM basics}
127 adcroft 1.3
128     % Section: Overview
129 adcroft 1.1 \input{part1/part1}
130 adcroft 1.8 %\pagebreak
131 adcroft 1.1
132 adcroft 1.3 % Section: Discretization and Algorithm
133 adcroft 1.1 \input{part2/part2}
134 adcroft 1.8 %\pagebreak
135 adcroft 1.1
136 adcroft 1.3 % Section: Getting started
137 adcroft 1.1 \input{part3/part3}
138 adcroft 1.8 %\pagebreak
139 adcroft 1.1
140 adcroft 1.3 % Section: Software Architecture
141 adcroft 1.1 \input{part4/part4}
142 adcroft 1.8 %\pagebreak
143 adcroft 1.1
144 adcroft 1.3
145 adcroft 1.10 %\part{Adjoint of the MIT GCM}
146 adcroft 1.3
147     % Section: Automatic Differentiation
148 adcroft 1.1 \input{part5/part5}
149 adcroft 1.8 %\pagebreak
150 adcroft 1.1
151 adcroft 1.3
152 adcroft 1.10 %\part{Additional features}
153 adcroft 1.3
154     % Section: Physical Packages
155 adcroft 1.1 \input{part6/part6}
156 adcroft 1.8 %\pagebreak
157 adcroft 1.1
158 adcroft 1.3 % Section: Diagnostics
159 adcroft 1.1 \input{part7/part7}
160 adcroft 1.14 %\pagebreak
161    
162     % Section: ECCO
163     \input{part8/part8}
164 adcroft 1.8 %\pagebreak
165 adcroft 1.1
166 heimbach 1.5 % Section: References:
167 adcroft 1.10 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
168 heimbach 1.6 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
169 adcroft 1.10 %aja%\bibliography{\BIBPATH/manual_references}
170     \bibliography{manual_references}
171 heimbach 1.6
172 adcroft 1.1 \end{document}

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