/[MITgcm]/manual/manual.tex
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Revision 1.22 - (hide annotations) (download) (as text)
Mon Mar 15 22:39:28 2004 UTC (16 years, 2 months ago) by afe
Branch: MAIN
Changes since 1.21: +16 -1 lines
File MIME type: application/x-tex
o more additions to exch2, plus some LaTeX functions to facilitate
  standardization

1 afe 1.22 % $Header: /u/u3/gcmpack/manual/manual.tex,v 1.21 2004/02/17 21:58:56 edhill Exp $
2 adcroft 1.2 % $Name: $
3 adcroft 1.1
4     \documentclass[12pt]{book}
5    
6 adcroft 1.8 %To help cross-reference
7     %\usepackage{showlabels}
8    
9     %aja%\usepackage{amsfonts}
10 adcroft 1.1 \usepackage{amsmath}
11 cnh 1.7 \usepackage{html}
12 cnh 1.19 \usepackage{hthtml}
13 adcroft 1.10 \usepackage{graphicx}
14 adcroft 1.8
15     %cnh%\usepackage{array}
16     %cnh%\usepackage{multirow}
17 cnh 1.12
18 edhill 1.16 %eh3 Commands to reference either files or symbols within the "HTML-ized"
19     %eh3 ("vdb") code.
20     %eh3
21 edhill 1.20 \newcommand{\varlink}[2]{
22 edhill 1.21 \htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}
23 cnh 1.12 }
24 edhill 1.20 \newcommand{\filelink}[2]{
25 edhill 1.16 \htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}
26 cnh 1.12 }
27 afe 1.22
28     % afe Commands to standardize typesetting
29     \newcommand{\file}[1]{
30     \texttt{#1}
31     }
32    
33     \newcommand{\sectiontitle}[1]{
34     \textsl{#1}
35     }
36    
37     \newcommand{\code}[1]{
38     \texttt{#1}
39     }
40    
41    
42 cnh 1.12
43 edhill 1.18 %eh3 try out the epsfig package
44     \usepackage[dvips]{epsfig}
45     \def\scalefig#1{\epsfxsize #1\textwidth}
46 cnh 1.12
47 adcroft 1.8
48     %ph%\usepackage{epsfig}
49     %ph%\usepackage{psfrag}
50     %ph%\usepackage{oldgerm}
51    
52 adcroft 1.2 % I commented the following because it introduced excessive white space
53 adcroft 1.8 %aja%\usepackage{palatcm} % better PDF
54 adcroft 1.1
55     % page headers and footers
56 adcroft 1.8 %cnh%\usepackage{fancyhdr}
57 adcroft 1.2 %\pagestyle{fancy}
58 adcroft 1.8 %cnh%\fancyhead{}
59     %cnh%\fancyhead[LO]{\slshape \rightmark}
60     %cnh%\fancyhead[RE]{\slshape \leftmark}
61     %cnh%\fancyhead[RO,LE]{\thepage}
62     %cnh%\fancyfoot[CO,CE]{\today}
63     %cnh%\fancyfoot[RO,LE]{ }
64     %cnh%\renewcommand{\headrulewidth}{0.4pt}
65     %cnh%\renewcommand{\footrulewidth}{0.4pt}
66 adcroft 1.1
67 heimbach 1.5 % bibtex stuff
68 adcroft 1.10 %aja%\newcommand{\BIBPATH}{.}
69     %aja%\usepackage{natbib}
70     %aja%\bibliographystyle{\BIBPATH/jmr_my}
71     %aja%\gdef\harvardleft{[}
72     %aja%\gdef\harvardright{]}
73     %aja%\bibpunct{[}{]}{,}{a}{}{,}
74     \bibliographystyle{plain}
75 heimbach 1.5
76 adcroft 1.1 % referencing
77 adcroft 1.8 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
78     %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
79     %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
80     %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
81     %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
82     %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
83 adcroft 1.1
84     % stuff for psfrag
85 adcroft 1.8 %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
86     %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
87 adcroft 1.1
88 adcroft 1.3 % This allows numbering of subsubsections
89     \setcounter{secnumdepth}{3}
90     % This changes the the chapter title
91     %\renewcommand{\chaptername}{Section}
92    
93 adcroft 1.11
94     % This allows hyperlinks in PDF
95     % hyperref package and colors for hyperref package
96     \usepackage{color}
97     \usepackage[dvips]{hyperref}
98     \definecolor{darkgreen}{rgb}{0,0.4,0}
99     \definecolor{darkblue}{rgb}{0,0,0.4}
100     \definecolor{darkred}{rgb}{0.5,0,0}
101     \hypersetup{breaklinks=true,
102     colorlinks=true,
103     linkcolor=darkgreen,
104     citecolor=darkblue,
105     pagecolor=darkred,
106     pdftitle={MITgcm Release 1 Documentation},
107 edhill 1.15 pdfauthor={MITgcm-support@mitgcm.org},
108 adcroft 1.11 pdfkeywords={oceanography, ocean model, general circulation model,
109     non-hydrostatic, finite volume, inverse methods, adjoint method}
110     }
111 molod 1.17
112     % Some definitions (AMM)
113     \def\p#1{{\partial \over {\partial #1}}}
114     \def\pp#1#2{{\partial #1 \over {\partial #2}}}
115     \def\dd#1#2{{d #1 \over {d #2}}}
116     \def\bq{\begin{equation}}
117     \def\bqa{\begin{eqnarray}}
118     \def\eq{\end{equation}}
119     \def\eqa{\end{eqnarray}}
120    
121     \def\h{ {1\over2} }
122     \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
123     \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
124    
125     \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
126    
127 adcroft 1.1
128     \begin{document}
129 cnh 1.9
130     \bodytext{bgcolor="#FFFFFFFF"}
131 adcroft 1.1
132     \tableofcontents
133 adcroft 1.10 %\pagebreak
134 adcroft 1.1
135 adcroft 1.10 %\part{MIT GCM basics}
136 adcroft 1.3
137     % Section: Overview
138 adcroft 1.1 \input{part1/part1}
139 adcroft 1.8 %\pagebreak
140 adcroft 1.1
141 adcroft 1.3 % Section: Discretization and Algorithm
142 adcroft 1.1 \input{part2/part2}
143 adcroft 1.8 %\pagebreak
144 adcroft 1.1
145 adcroft 1.3 % Section: Getting started
146 adcroft 1.1 \input{part3/part3}
147 adcroft 1.8 %\pagebreak
148 adcroft 1.1
149 adcroft 1.3 % Section: Software Architecture
150 adcroft 1.1 \input{part4/part4}
151 adcroft 1.8 %\pagebreak
152 adcroft 1.1
153 adcroft 1.3
154 adcroft 1.10 %\part{Adjoint of the MIT GCM}
155 adcroft 1.3
156     % Section: Automatic Differentiation
157 adcroft 1.1 \input{part5/part5}
158 adcroft 1.8 %\pagebreak
159 adcroft 1.1
160 adcroft 1.3
161 adcroft 1.10 %\part{Additional features}
162 adcroft 1.3
163     % Section: Physical Packages
164 adcroft 1.1 \input{part6/part6}
165 adcroft 1.8 %\pagebreak
166 adcroft 1.1
167 adcroft 1.3 % Section: Diagnostics
168 adcroft 1.1 \input{part7/part7}
169 adcroft 1.14 %\pagebreak
170    
171     % Section: ECCO
172     \input{part8/part8}
173 adcroft 1.8 %\pagebreak
174 adcroft 1.1
175 heimbach 1.5 % Section: References:
176 adcroft 1.10 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
177 heimbach 1.6 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
178 adcroft 1.10 %aja%\bibliography{\BIBPATH/manual_references}
179     \bibliography{manual_references}
180 heimbach 1.6
181 adcroft 1.1 \end{document}

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