/[MITgcm]/manual/manual.tex
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Revision 1.20 - (hide annotations) (download) (as text)
Thu Feb 12 03:35:05 2004 UTC (15 years, 5 months ago) by edhill
Branch: MAIN
Changes since 1.19: +3 -3 lines
File MIME type: application/x-tex
 o updates to the "packages" discussion
 o more mnc documentation

1 edhill 1.20 % $Header: /u/u3/gcmpack/manual/manual.tex,v 1.19 2004/01/29 16:42:12 cnh Exp $
2 adcroft 1.2 % $Name: $
3 adcroft 1.1
4     \documentclass[12pt]{book}
5    
6 adcroft 1.8 %To help cross-reference
7     %\usepackage{showlabels}
8    
9     %aja%\usepackage{amsfonts}
10 adcroft 1.1 \usepackage{amsmath}
11 cnh 1.7 \usepackage{html}
12 cnh 1.19 \usepackage{hthtml}
13 adcroft 1.10 \usepackage{graphicx}
14 adcroft 1.8
15     %cnh%\usepackage{array}
16     %cnh%\usepackage{multirow}
17 cnh 1.12
18 edhill 1.16 %eh3 Commands to reference either files or symbols within the "HTML-ized"
19     %eh3 ("vdb") code.
20     %eh3
21 edhill 1.20 \newcommand{\varlink}[2]{
22 edhill 1.16 \htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html}
23 cnh 1.12 }
24 edhill 1.20 \newcommand{\filelink}[2]{
25 edhill 1.16 \htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}
26 cnh 1.12 }
27    
28 edhill 1.18 %eh3 try out the epsfig package
29     \usepackage[dvips]{epsfig}
30     \def\scalefig#1{\epsfxsize #1\textwidth}
31 cnh 1.12
32 adcroft 1.8
33     %ph%\usepackage{epsfig}
34     %ph%\usepackage{psfrag}
35     %ph%\usepackage{oldgerm}
36    
37 adcroft 1.2 % I commented the following because it introduced excessive white space
38 adcroft 1.8 %aja%\usepackage{palatcm} % better PDF
39 adcroft 1.1
40     % page headers and footers
41 adcroft 1.8 %cnh%\usepackage{fancyhdr}
42 adcroft 1.2 %\pagestyle{fancy}
43 adcroft 1.8 %cnh%\fancyhead{}
44     %cnh%\fancyhead[LO]{\slshape \rightmark}
45     %cnh%\fancyhead[RE]{\slshape \leftmark}
46     %cnh%\fancyhead[RO,LE]{\thepage}
47     %cnh%\fancyfoot[CO,CE]{\today}
48     %cnh%\fancyfoot[RO,LE]{ }
49     %cnh%\renewcommand{\headrulewidth}{0.4pt}
50     %cnh%\renewcommand{\footrulewidth}{0.4pt}
51 adcroft 1.1
52 heimbach 1.5 % bibtex stuff
53 adcroft 1.10 %aja%\newcommand{\BIBPATH}{.}
54     %aja%\usepackage{natbib}
55     %aja%\bibliographystyle{\BIBPATH/jmr_my}
56     %aja%\gdef\harvardleft{[}
57     %aja%\gdef\harvardright{]}
58     %aja%\bibpunct{[}{]}{,}{a}{}{,}
59     \bibliographystyle{plain}
60 heimbach 1.5
61 adcroft 1.1 % referencing
62 adcroft 1.8 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
63     %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
64     %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
65     %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
66     %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
67     %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
68 adcroft 1.1
69     % stuff for psfrag
70 adcroft 1.8 %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
71     %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
72 adcroft 1.1
73 adcroft 1.3 % This allows numbering of subsubsections
74     \setcounter{secnumdepth}{3}
75     % This changes the the chapter title
76     %\renewcommand{\chaptername}{Section}
77    
78 adcroft 1.11
79     % This allows hyperlinks in PDF
80     % hyperref package and colors for hyperref package
81     \usepackage{color}
82     \usepackage[dvips]{hyperref}
83     \definecolor{darkgreen}{rgb}{0,0.4,0}
84     \definecolor{darkblue}{rgb}{0,0,0.4}
85     \definecolor{darkred}{rgb}{0.5,0,0}
86     \hypersetup{breaklinks=true,
87     colorlinks=true,
88     linkcolor=darkgreen,
89     citecolor=darkblue,
90     pagecolor=darkred,
91     pdftitle={MITgcm Release 1 Documentation},
92 edhill 1.15 pdfauthor={MITgcm-support@mitgcm.org},
93 adcroft 1.11 pdfkeywords={oceanography, ocean model, general circulation model,
94     non-hydrostatic, finite volume, inverse methods, adjoint method}
95     }
96 molod 1.17
97     % Some definitions (AMM)
98     \def\p#1{{\partial \over {\partial #1}}}
99     \def\pp#1#2{{\partial #1 \over {\partial #2}}}
100     \def\dd#1#2{{d #1 \over {d #2}}}
101     \def\bq{\begin{equation}}
102     \def\bqa{\begin{eqnarray}}
103     \def\eq{\end{equation}}
104     \def\eqa{\end{eqnarray}}
105    
106     \def\h{ {1\over2} }
107     \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
108     \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
109    
110     \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
111    
112 adcroft 1.1
113     \begin{document}
114 cnh 1.9
115     \bodytext{bgcolor="#FFFFFFFF"}
116 adcroft 1.1
117     \tableofcontents
118 adcroft 1.10 %\pagebreak
119 adcroft 1.1
120 adcroft 1.10 %\part{MIT GCM basics}
121 adcroft 1.3
122     % Section: Overview
123 adcroft 1.1 \input{part1/part1}
124 adcroft 1.8 %\pagebreak
125 adcroft 1.1
126 adcroft 1.3 % Section: Discretization and Algorithm
127 adcroft 1.1 \input{part2/part2}
128 adcroft 1.8 %\pagebreak
129 adcroft 1.1
130 adcroft 1.3 % Section: Getting started
131 adcroft 1.1 \input{part3/part3}
132 adcroft 1.8 %\pagebreak
133 adcroft 1.1
134 adcroft 1.3 % Section: Software Architecture
135 adcroft 1.1 \input{part4/part4}
136 adcroft 1.8 %\pagebreak
137 adcroft 1.1
138 adcroft 1.3
139 adcroft 1.10 %\part{Adjoint of the MIT GCM}
140 adcroft 1.3
141     % Section: Automatic Differentiation
142 adcroft 1.1 \input{part5/part5}
143 adcroft 1.8 %\pagebreak
144 adcroft 1.1
145 adcroft 1.3
146 adcroft 1.10 %\part{Additional features}
147 adcroft 1.3
148     % Section: Physical Packages
149 adcroft 1.1 \input{part6/part6}
150 adcroft 1.8 %\pagebreak
151 adcroft 1.1
152 adcroft 1.3 % Section: Diagnostics
153 adcroft 1.1 \input{part7/part7}
154 adcroft 1.14 %\pagebreak
155    
156     % Section: ECCO
157     \input{part8/part8}
158 adcroft 1.8 %\pagebreak
159 adcroft 1.1
160 heimbach 1.5 % Section: References:
161 adcroft 1.10 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
162 heimbach 1.6 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
163 adcroft 1.10 %aja%\bibliography{\BIBPATH/manual_references}
164     \bibliography{manual_references}
165 heimbach 1.6
166 adcroft 1.1 \end{document}

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