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Revision 1.17 - (hide annotations) (download) (as text)
Wed Jan 28 18:19:36 2004 UTC (20 years, 2 months ago) by molod
Branch: MAIN
Changes since 1.16: +17 -1 lines
File MIME type: application/x-tex
Added some definitions for latex in the prologue

1 molod 1.17 % $Header: /u/u3/gcmpack/manual/manual.tex,v 1.16 2003/08/07 18:27:51 edhill Exp $
2 adcroft 1.2 % $Name: $
3 adcroft 1.1
4     \documentclass[12pt]{book}
5    
6 adcroft 1.8 %To help cross-reference
7     %\usepackage{showlabels}
8    
9     %aja%\usepackage{amsfonts}
10 adcroft 1.1 \usepackage{amsmath}
11 cnh 1.7 \usepackage{html}
12 adcroft 1.10 \usepackage{graphicx}
13 adcroft 1.8
14     %cnh%\usepackage{array}
15     %cnh%\usepackage{multirow}
16 cnh 1.12
17 edhill 1.16 %eh3 Commands to reference either files or symbols within the "HTML-ized"
18     %eh3 ("vdb") code.
19     %eh3
20     \newcommand{\filelink}[2]{
21     \htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html}
22 cnh 1.12 }
23     \newcommand{\varlink}[2]{
24 edhill 1.16 \htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}
25 cnh 1.12 }
26    
27    
28 adcroft 1.8
29     %ph%\usepackage{epsfig}
30     %ph%\usepackage{psfrag}
31     %ph%\usepackage{oldgerm}
32    
33 adcroft 1.2 % I commented the following because it introduced excessive white space
34 adcroft 1.8 %aja%\usepackage{palatcm} % better PDF
35 adcroft 1.1
36     % page headers and footers
37 adcroft 1.8 %cnh%\usepackage{fancyhdr}
38 adcroft 1.2 %\pagestyle{fancy}
39 adcroft 1.8 %cnh%\fancyhead{}
40     %cnh%\fancyhead[LO]{\slshape \rightmark}
41     %cnh%\fancyhead[RE]{\slshape \leftmark}
42     %cnh%\fancyhead[RO,LE]{\thepage}
43     %cnh%\fancyfoot[CO,CE]{\today}
44     %cnh%\fancyfoot[RO,LE]{ }
45     %cnh%\renewcommand{\headrulewidth}{0.4pt}
46     %cnh%\renewcommand{\footrulewidth}{0.4pt}
47 adcroft 1.1
48 heimbach 1.5 % bibtex stuff
49 adcroft 1.10 %aja%\newcommand{\BIBPATH}{.}
50     %aja%\usepackage{natbib}
51     %aja%\bibliographystyle{\BIBPATH/jmr_my}
52     %aja%\gdef\harvardleft{[}
53     %aja%\gdef\harvardright{]}
54     %aja%\bibpunct{[}{]}{,}{a}{}{,}
55     \bibliographystyle{plain}
56 heimbach 1.5
57 adcroft 1.1 % referencing
58 adcroft 1.8 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
59     %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
60     %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
61     %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
62     %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
63     %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
64 adcroft 1.1
65     % stuff for psfrag
66 adcroft 1.8 %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
67     %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
68 adcroft 1.1
69 adcroft 1.3 % This allows numbering of subsubsections
70     \setcounter{secnumdepth}{3}
71     % This changes the the chapter title
72     %\renewcommand{\chaptername}{Section}
73    
74 adcroft 1.11
75     % This allows hyperlinks in PDF
76     % hyperref package and colors for hyperref package
77     \usepackage{color}
78     \usepackage[dvips]{hyperref}
79     \definecolor{darkgreen}{rgb}{0,0.4,0}
80     \definecolor{darkblue}{rgb}{0,0,0.4}
81     \definecolor{darkred}{rgb}{0.5,0,0}
82     \hypersetup{breaklinks=true,
83     colorlinks=true,
84     linkcolor=darkgreen,
85     citecolor=darkblue,
86     pagecolor=darkred,
87     pdftitle={MITgcm Release 1 Documentation},
88 edhill 1.15 pdfauthor={MITgcm-support@mitgcm.org},
89 adcroft 1.11 pdfkeywords={oceanography, ocean model, general circulation model,
90     non-hydrostatic, finite volume, inverse methods, adjoint method}
91     }
92 molod 1.17
93     % Some definitions (AMM)
94     \def\p#1{{\partial \over {\partial #1}}}
95     \def\pp#1#2{{\partial #1 \over {\partial #2}}}
96     \def\dd#1#2{{d #1 \over {d #2}}}
97     \def\bq{\begin{equation}}
98     \def\bqa{\begin{eqnarray}}
99     \def\eq{\end{equation}}
100     \def\eqa{\end{eqnarray}}
101    
102     \def\h{ {1\over2} }
103     \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
104     \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
105    
106     \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
107    
108 adcroft 1.1
109     \begin{document}
110 cnh 1.9
111     \bodytext{bgcolor="#FFFFFFFF"}
112 adcroft 1.1
113     \tableofcontents
114 adcroft 1.10 %\pagebreak
115 adcroft 1.1
116 adcroft 1.10 %\part{MIT GCM basics}
117 adcroft 1.3
118     % Section: Overview
119 adcroft 1.1 \input{part1/part1}
120 adcroft 1.8 %\pagebreak
121 adcroft 1.1
122 adcroft 1.3 % Section: Discretization and Algorithm
123 adcroft 1.1 \input{part2/part2}
124 adcroft 1.8 %\pagebreak
125 adcroft 1.1
126 adcroft 1.3 % Section: Getting started
127 adcroft 1.1 \input{part3/part3}
128 adcroft 1.8 %\pagebreak
129 adcroft 1.1
130 adcroft 1.3 % Section: Software Architecture
131 adcroft 1.1 \input{part4/part4}
132 adcroft 1.8 %\pagebreak
133 adcroft 1.1
134 adcroft 1.3
135 adcroft 1.10 %\part{Adjoint of the MIT GCM}
136 adcroft 1.3
137     % Section: Automatic Differentiation
138 adcroft 1.1 \input{part5/part5}
139 adcroft 1.8 %\pagebreak
140 adcroft 1.1
141 adcroft 1.3
142 adcroft 1.10 %\part{Additional features}
143 adcroft 1.3
144     % Section: Physical Packages
145 adcroft 1.1 \input{part6/part6}
146 adcroft 1.8 %\pagebreak
147 adcroft 1.1
148 adcroft 1.3 % Section: Diagnostics
149 adcroft 1.1 \input{part7/part7}
150 adcroft 1.14 %\pagebreak
151    
152     % Section: ECCO
153     \input{part8/part8}
154 adcroft 1.8 %\pagebreak
155 adcroft 1.1
156 heimbach 1.5 % Section: References:
157 adcroft 1.10 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
158 heimbach 1.6 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
159 adcroft 1.10 %aja%\bibliography{\BIBPATH/manual_references}
160     \bibliography{manual_references}
161 heimbach 1.6
162 adcroft 1.1 \end{document}

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