--- manual/baylor_biblio.bib	2005/10/05 19:52:47	1.1
+++ manual/baylor_biblio.bib	2013/03/26 15:10:46	1.4
@@ -1,8 +1,8 @@
-@string{pnas="Proceedings of the National Academy of Sciences"} 
-@string{plms="Proceedings of the London Mathematical Society"} 
-@string{aas="Advances in Atmospheric Sciences"} 
-@string{ajs="American Journal of Science"} 
-@string{amsb="American Meteorological Society, Bulletin"} 
+@string{pnas="Proceedings of the National Academy of Sciences"}
+@string{plms="Proceedings of the London Mathematical Society"}
+@string{aas="Advances in Atmospheric Sciences"}
+@string{ajs="American Journal of Science"}
+@string{amsb="American Meteorological Society, Bulletin"}
 @string{ag="Annales Geophysicae"}
 @string{arfm="Annual Review of Fluid Mechanics"}
 @string{ajus="Antarctic Journal of the United States"}
@@ -174,11 +174,13 @@
 PAGE       ="195-232",
 YEAR       ="2004"}
 
-@ARTICLE{fo04tg,
+@ARTICLE{fo05mg,
 AUTHOR     ="B. {Fox-Kemper}",
 TITLE      ="Reevaluating the roles of eddies in multiple barotropic wind-driven gyres",
 JOURNAL    =jpo,
-NOTE       ="submitted",
+VOLUME     ="35",
+NUMBER     ="7",
+PAGE       ="1263-1278",
 YEAR       ="2004"}
 
 @ARTICLE{fofepe03,
@@ -241,17 +243,17 @@
 }
 
 
-@UNPUBLISHED{fofe05,
+@UNPUBLISHED{fofe06,
 AUTHOR     ="B. {Fox-Kemper} and R. Ferrari",
 TITLE      ="A Residual Mean {Parsons-Veronis} Model",
 NOTE       ="In preparation",
 YEAR       ="2005"}
 
-@UNPUBLISHED{fona05,
+@UNPUBLISHED{fona06,
 AUTHOR     ="B. {Fox-Kemper} and B. Nadiga",
-TITLE      ="On the Interpretation of Counter-Rotating Gyres in Alpha Models",
+TITLE      ="Interpretation and Coarse-Resolution Modeling of Counter-Rotating Gyres",
 NOTE       ="In preparation",
-YEAR       ="2005"}
+YEAR       ="2006"}
 
 @UNPUBLISHED{fova05,
 AUTHOR     ="B. {Fox-Kemper} and G. K. Vallis",
@@ -259,12 +261,43 @@
 NOTE       ="In preparation",
 YEAR       ="2005"}
 
-@UNPUBLISHED{hafo05,
+@UNPUBLISHED{fome06,
+AUTHOR     ="B. {Fox-Kemper} and D. Menemenlis",
+TITLE      ="Comparing and Properly Implementing {Smagorinsky} and {Leith} Nonlinear Viscosities",
+NOTE       ="In preparation",
+YEAR       ="2006"}
+
+@UNPUBLISHED{hafo06,
 AUTHOR     ="R. W. Hallberg and B. {Fox-Kemper}",
-TITLE      ="On Bounding Coriolis Errors in Shallow-water Models",
+TITLE      ="On Bounding {Coriolis} Errors in Shallow-water Models",
 NOTE       ="In preparation",
 YEAR       ="2005"}
 
+@UNPUBLISHED{bofefo05,
+AUTHOR     ="G. Boccaletti and R. Ferrari and B. {Fox-Kemper}",
+TITLE      ="Mixed Layer Instabilities and Parameterization",
+NOTE       ="Submitted",
+YEAR       ="2005"}
+
+@UNPUBLISHED{fo06,
+AUTHOR     ="B. {Fox-Kemper}",
+TITLE      ="Eddy Fluxes of Multiple Tracers",
+NOTE       ="In preparation",
+YEAR       ="2006"}
+
+@UNPUBLISHED{fofe06cpt,
+AUTHOR     ="B. {Fox-Kemper} and R. Ferrari",
+TITLE      ="Mixed Layer Mesoscale Eddy Interaction",
+NOTE       ="In preparation",
+YEAR       ="2006"}
+
+@UNPUBLISHED{fofeha06,
+AUTHOR     ="B. {Fox-Kemper} and R. Ferrari and R. W. Hallberg",
+TITLE      ="Parameterizing Mixed Layer Eddies",
+NOTE       ="In preparation",
+YEAR       ="2006"}
+
+
 @UNPUBLISHED{ha03,
 AUTHOR     ="R. W. Hallberg",
 TITLE      ="The suitability of large-scale ocean models for adapting parameterizations of boundary mixing and a description of a refined bulk mixed layer model",
@@ -282,7 +315,7 @@
 
 @ARTICLE{arfl03a,
 AUTHOR     ="Brian K. Arbic and Glenn R. Flierl",
-TITLE      ="Coherent vortices and kinetic energy ribbons in asymptotic, quasi 
+TITLE      ="Coherent vortices and kinetic energy ribbons in asymptotic, quasi
 two-dimensional f-plane turbulence",
 JOURNAL    ="Physics of Fluids",
 NOTE       ="In press",
@@ -528,7 +561,7 @@
 
 @ARTICLE{Leith96,
 AUTHOR     ="C. E. Leith",
- Title = "Large Eddy Simulation of Complex Engineering and Geophysical Flows",
+ Title = "Stochastic models of chaotic systems",
 JOURNAL    ="Physica D.",
  Year = "1996",
  VOLUME ="98",
@@ -558,14 +591,6 @@
 PAGES      ="1154-1158",
 YEAR       ="1982"}
 
-@ARTICLE{gr98,
-AUTHOR     ="S. M. Griffies",
-TITLE      ="The {Gent-McWilliams} Skew Flux",
-JOURNAL    =jpo,
-VOLUME     ="28",
-PAGES      ="831-841",
-YEAR       ="1998"}
-
 @ARTICLE{sa04,
 AUTHOR     ="R. Salmon",
 TITLE      ="Poisson-Bracket Approach to the Construction of Energy- and Potential-Enstrophy-Conserving Algorithms for the Shallow-Water Equations",
@@ -3545,7 +3570,7 @@
 
 @ARTICLE{Cane1989,
   AUTHOR = {Mark A. Cane},
-  TITLE = {{A mathematical note on Kawase's study of the deep-ocean 
+  TITLE = {{A mathematical note on Kawase's study of the deep-ocean
            circulation}},
   JOURNAL = {J. Phys. Oceanogr.},
   VOLUME = 19,
@@ -4242,7 +4267,7 @@
 
 @ARTICLE{Covey:Hastenrath1978,
   AUTHOR = {D.L. Covey and S. Hastenrath},
-  TITLE = {{The Pacific  {El Ni\~no} phenomenon and the Atlantic 
+  TITLE = {{The Pacific  {El Ni\~no} phenomenon and the Atlantic
                  circulation.}},
   JOURNAL = mwr,
   YEAR = {1978},
@@ -5072,7 +5097,7 @@
 }
 
 @ARTICLE{Geisler:etal1985,
-  AUTHOR = {Geisler, J. E. and Blackmon, M. L. and 
+  AUTHOR = {Geisler, J. E. and Blackmon, M. L. and
                  Bates, G. T. and Mu\~noz, S.},
   TITLE = {{Sensitivity of January climate response to the
                  magnitude and position of equatorial Pacific sea
@@ -5355,7 +5380,7 @@
 @ARTICLE{Graham:etal1987b,
   AUTHOR = {Graham, N.E. and J. Michaelsen and T.P. Barnett},
   TITLE = {An investigation of the {El Ni\~no-Southern
-                 Oscillation} cycle with statistical models. 2. 
+                 Oscillation} cycle with statistical models. 2.
                  {Model results}.},
   JOURNAL = jgr,
   YEAR = {1987b},
@@ -5396,16 +5421,6 @@
   NOTE = {To be submitted}
 }
 
-@ARTICLE{Griffies1997,
-  AUTHOR = {S. M. Griffies},
-  TITLE = {{The Gent-McWilliams Skew Flux}},
-  JOURNAL = {J. Phys. Oceanogr.},
-  YEAR = {1997},
-  VOLUME = {},
-  PAGES = {},
-  NOTE = {Submitted}
-}
-
 @ARTICLE{Grossman:Betts1990,
   AUTHOR = {Grossman, R. L. and A. K. Betts},
   TITLE = {{Air-sea interaction during an extreme cold air
@@ -5669,7 +5684,7 @@
 
 @ARTICLE{Hasselmann1988,
   AUTHOR = {Hasselmann, K.},
-  TITLE = {{PIPs and POPs: the reduction of complex dynamical systems using 
+  TITLE = {{PIPs and POPs: the reduction of complex dynamical systems using
        principal interaction and Oscillation patterns}},
   JOURNAL = jgr,
   VOLUME = {93},
@@ -7766,7 +7781,7 @@
                  Halpern and M. Spahr},
   TITLE = {{Coupling experiments of an atmospheric and an oceanic CGM}},
   BOOKTITLE = {{International TOGA Scientific Conference
-                 Proceedings, 
+                 Proceedings,
                  Technical Document No.
                  379, WCRP-43.}},
   PUBLISHER = {World Climate Research Programme, Geneva},
@@ -7980,8 +7995,8 @@
 
 @ARTICLE{Miller1990,
   AUTHOR = {{Miller, R.N.}},
-  TITLE = {{Tropical Data Assimilation Experiments With Simulated Data:  
-The Impact of the Tropical Ocean and Global Atmosphere 
+  TITLE = {{Tropical Data Assimilation Experiments With Simulated Data:
+The Impact of the Tropical Ocean and Global Atmosphere
 Thermal Array for the Ocean}},
   JOURNAL = jgr,
   VOLUME = {95},
@@ -9851,7 +9866,7 @@
 
 @ARTICLE{Seager1996,
   AUTHOR = {Seager, R.},
-  TITLE = {{Generalization of an advective atmospheric mixed layer model for 
+  TITLE = {{Generalization of an advective atmospheric mixed layer model for
                   ocean modeling purposes: Simulation of Southern
                   Ocean heat fluxes}},
   JOURNAL = jc,
@@ -12005,7 +12020,7 @@
   AUTHOR = {Stephen E. Zebiak and Mark A. Cane},
   TITLE = {Diagnostic studies of a coupled model's climate variability.},
   EDITOR = {David R. Rodenhuis},
-  BOOKTITLE = {{Proceedings of the 13th Climate Diagnostics Workshop, 
+  BOOKTITLE = {{Proceedings of the 13th Climate Diagnostics Workshop,
                 Oct. 31-Nov. 4, 1988}},
   YEAR = {1988},
   PUBLISHER = {NOAA}