--- manual/Makefile	2004/02/04 04:49:19	1.21
+++ manual/Makefile	2005/08/09 16:41:35	1.26
@@ -2,48 +2,6 @@
 #      -address "<a href=mailto:support@mitgcm.org>support@mitgcm.org</a>" \
 #      -local_icons -noantialias -notransparent -white
 
-PROTEX_PKGS = \
-   aim \
-   aim_compon_interf \
-   aim_ocn_coupler \
-   aim_v23 \
-   autodiff \
-   bulk_force \
-   cal \
-   cd_code \
-   cfc \
-   compon_communic \
-   cost \
-   ctrl \
-   debug \
-   dic \
-   ecco \
-   exch2 \
-   exf \
-   fizhi \
-   flt \
-   gchem \
-   generic_advdiff \
-   gmredi \
-   grdchk \
-   gridalt \
-   kpp \
-   land \
-   mdsio \
-   mnc \
-   mom_fluxform \
-   mom_vecinv \
-   monitor \
-   obcs \
-   ocn_compon_interf \
-   ptracers \
-   rw \
-   sbo \
-   seaice \
-   shap_filt \
-   thsice \
-   timeave \
-   zonal_filt 
 
 L2H = -image_type png -split 5 -show_section_numbers -link 2 \
       -address "<a href=mailto:support@mitgcm.org>mitgcm-support@dev.mitgcm.org</a>" \
@@ -65,9 +23,6 @@
 	make ps.gz
 	make html
 
-pt_files:
-	./run_protex $(PROTEX_PKGS)
-
 tex: manual.dvi
 
 ps: manual.ps
@@ -88,14 +43,15 @@
 	cd manual; ../tools/make_mail_subjects.sh
 	cd manual; ../tools/figsub.sh
 	cd manual; ../tools/fix_docref_target.sh
+	cd manual; ../tools/genredir.sh
 	tar -czf manual.tgz manual
 
 l2h: l2h.tgz
 
 subfigs: manual.tgz
 
-manual.dvi: *.tex */*.tex */*/*/*.tex */*.ps */*.eps */*/*/*.eps manual_references.bib
-	make pt_files
+manual.dvi: *.tex */*.tex */*/*/*.tex */*.ps */*.eps */*/*/*.eps manual_references.bib */*/*/*.templ
+	( cd part3/case_studies/held_suarez_cs/  &&  make )
 	TEXINPUTS=.:::texinputs latex manual
 	bibtex manual
 	TEXINPUTS=.:::texinputs latex manual
@@ -108,6 +64,7 @@
 	ps2pdf -dMaxSubsetPct=100 -dCompatibilityLevel=1.2 -dSubsetFonts=true -dEmbedAllFonts=true manual.ps manual.pdf
 
 clean: 
+	( cd part3/case_studies/held_suarez_cs/  &&  make clean )
 	rm -f manual.{aux,bbl,blg,dvi,log,out,toc} warnings l2h.log
 Clean:
 	make clean