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jmc |
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#!/bin/bash |
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#SBATCH -J pgiMth_tst |
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#SBATCH -p fdr |
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#SBATCH -t 12:00:00 |
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#SBATCH --mem-per-cpu 4000 |
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#SBATCH -N 1 |
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#SBATCH --tasks-per-node 3 |
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#SBATCH -e /home/jm_c/test_svante/output/pgiMth_tst.stderr |
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#SBATCH -o /home/jm_c/test_svante/output/pgiMth_tst.stdout |
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#SBATCH --no-requeue |
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# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/test_svante_pgi_mpi,v 1.8 2017/03/18 13:11:08 jmc Exp $ |
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# $Name: $ |
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if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi |
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if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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headNode='svante-login' |
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dNam='svante' |
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HERE="$HOME/test_${dNam}" |
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OUTP="$HERE/output"; SavD="$HERE/send" |
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SEND="ssh $headNode $SavD/mpack" |
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TST_DISK="/net/fs09/d0/jm_c" |
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TST_DIR="$TST_DISK/test_${dNam}" |
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cd $TST_DISK ; pwd |
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if test -d $TST_DIR ; then |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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else |
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#if test ! -d $TST_DISK ; then mkdir $TST_DISK ; fi |
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#if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi |
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#if test ! -d $TST_DIR ; then |
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# echo "ERROR: Can't create directory \"$TST_DIR\"" |
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# exit 1 |
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#fi |
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#echo "start in new dir TST_DIR='$TST_DIR' at: "`date` |
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echo "ERROR: missing directory \"$TST_DIR\"" |
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exit 1 |
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fi |
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sfx='pgiMth'; typ='' |
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addExp='' |
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module add pgi/16.9 |
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#module add openmpi |
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module add netcdf |
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OPTFILE="../tools/build_options/linux_amd64_pgf77" |
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#- needed for DIVA with MPI: |
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#export MPI_INC_DIR="/home/software/pgi/16.9/linux86-64/2016/mpi/openmpi-1.10.2/include" |
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options="$typ -mth" |
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export OMP_NUM_THREADS=2 |
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export OMP_STACKSIZE=400m |
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#- need this to get "staf": |
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#export PATH="$PATH:$HOME/bin" |
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dAlt=`date +%d` ; dAlt=`expr $dAlt % 3` |
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if [ $dAlt -eq 1 ] ; then options="$options -fast" |
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else options="$options -devel" ; fi |
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checkOut=2 ; #options="$options -do" |
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#options="$options -nc" ; checkOut=1 |
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#options="$options -q" ; checkOut=0 |
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NSLOTS=$SLURM_NTASKS |
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THEDATE=`date` |
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echo '********************************************************************************' |
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echo 'Start job '$THEDATE |
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echo 'NSLOTS = '$NSLOTS |
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echo '======= NODELIST ===============================================================' |
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echo $SLURM_NODELIST |
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cat /etc/redhat-release |
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echo '======= env ====================================================================' |
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env | grep SLURM |
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echo '======= modules ================================================================' |
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module list 2>&1 |
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echo '================================================================================' |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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gcmDIR="MITgcm_$sfx" |
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cd $TST_DIR |
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#- check for disk space: relative space (99%) or absolute (10.G): |
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dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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if [ $dsp -gt 99 ] ; then |
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#dsp=`df -P . | tail -1 | awk '{print $4}'` |
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#if [ $dsp -le 100000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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echo "cleaning output from $gcmDIR/verification :" |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$RETVAL) but continue" |
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fi |
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fi |
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done ) |
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( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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( cd $gcmDIR/verification ; ./testreport $typ -clean ) |
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echo "cvs update of dir $gcmDIR :" |
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( cd $gcmDIR ; $cmdCVS update -P -d ) 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" |
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exit |
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fi |
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else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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echo -n "Removing working copy: $gcmDIR ..." |
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rm -rf $gcmDIR |
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echo " done" |
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fi |
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# make a local copy (instead of using CVS): |
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today=`date +%Y%m%d` |
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nCount=0; updFile='updated_code' |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
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while [ $today -gt $updDate ] ; do |
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nCount=`expr $nCount + 1` |
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if [ $nCount -gt 40 ] ; then |
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echo " waiting too long (nCount=$nCount) for updated code" |
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echo " today=$today , updDate=$updDate " |
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ls -l $updFile |
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exit |
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fi |
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sleep 60 |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
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done |
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ls -l $updFile |
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echo " waited nCount=$nCount for updated code ($updDate) to copy" |
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if test -d MITgcm ; then |
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echo -n "Make local copy of dir 'MITgcm' to: $gcmDIR ..." |
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cp -pra MITgcm $gcmDIR |
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echo " done" |
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else echo " dir: MITgcm missing => exit" ; exit ; fi |
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# cvs co MITgcm |
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#echo "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..." |
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#$cmdCVS co -P -d $gcmDIR MITgcm > /dev/null |
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#RETVAL=$? |
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#if test "x$RETVAL" != x0 ; then |
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# echo "cvs co on '"`hostname`"' fail (return val=$RETVAL) => exit" |
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# exit |
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#else echo " done" ; fi |
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#if test -d $gcmDIR/verification ; then |
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# for exp2add in $addExp ; do |
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# echo " add dir: $exp2add (from Contrib:verification_other)" |
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# ( cd $gcmDIR/verification ; $cmdCVS co -P -d $exp2add \ |
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# MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
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# done |
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# /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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# /usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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#fi |
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fi |
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#- change dir to $gcmDIR/verification dir: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
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else |
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echo "no dir: $gcmDIR/verification => exit" |
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exit |
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fi |
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echo '' |
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echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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echo '' |
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echo ../tools/do_tst_2+2 -o ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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../tools/do_tst_2+2 -o ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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