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jmc |
1.1 |
#!/bin/bash |
| 2 |
jmc |
1.9 |
#SBATCH -J pgiMPI_tst |
| 3 |
jmc |
1.5 |
#SBATCH -p fdr |
| 4 |
jmc |
1.14 |
#SBATCH -t 23:30:00 |
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jmc |
1.5 |
#SBATCH --mem-per-cpu 4000 |
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#SBATCH -N 1 |
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#SBATCH --tasks-per-node 6 |
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jmc |
1.9 |
#SBATCH -e /home/jm_c/test_svante/output/pgiMPI_tst.stderr |
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#SBATCH -o /home/jm_c/test_svante/output/pgiMPI_tst.stdout |
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jmc |
1.7 |
#SBATCH --no-requeue |
| 11 |
jmc |
1.1 |
|
| 12 |
jmc |
1.14 |
# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/test_svante_pgi_mpi,v 1.13 2018/01/05 22:13:25 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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jmc |
1.5 |
if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi |
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if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi |
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jmc |
1.1 |
# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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jmc |
1.6 |
headNode='svante-login' |
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jmc |
1.1 |
|
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dNam='svante' |
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jmc |
1.2 |
HERE="$HOME/test_${dNam}" |
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jmc |
1.1 |
OUTP="$HERE/output"; SavD="$HERE/send" |
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jmc |
1.6 |
SEND="ssh $headNode $SavD/mpack" |
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jmc |
1.12 |
TST_DISK="/net/fs09/d1/jm_c" |
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jmc |
1.2 |
TST_DIR="$TST_DISK/test_${dNam}" |
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jmc |
1.14 |
#- where local copy of code is (need to be consistent with "test_submit_svante"): |
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#srcDIR=$HERE |
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srcDIR='.' |
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srcCode="MITgcm_today" |
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echo "cd $TST_DISK ; pwd (x2)" |
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cd $TST_DISK |
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pwd |
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if test ! -d $TST_DIR ; then |
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echo -n "Creating a working dir: $TST_DIR ..." |
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#/bin/rm -rf $TST_DIR |
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mkdir $TST_DIR |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "Error: unable to make dir: $TST_DIR (err=$retVal ) --> Exit" |
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exit 1 |
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fi |
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jmc |
1.1 |
fi |
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jmc |
1.14 |
echo "start from TST_DIR='$TST_DIR' at: "`date` |
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cd $TST_DIR |
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pwd |
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jmc |
1.1 |
|
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jmc |
1.10 |
typ='' ; addExp='' ; skipExp='' |
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sfx='pgiMPI' |
| 56 |
jmc |
1.5 |
module add pgi/16.9 |
| 57 |
jmc |
1.1 |
module add openmpi |
| 58 |
jmc |
1.5 |
module add netcdf |
| 59 |
jmc |
1.1 |
OPTFILE="../tools/build_options/linux_amd64_pgf77" |
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#- needed for DIVA with MPI: |
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jmc |
1.5 |
#export MPI_INC_DIR="/home/software/pgi/16.9/linux86-64/2016/mpi/openmpi-1.10.2/include" |
| 62 |
jmc |
1.1 |
options="$typ -MPI 6" |
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#- need this to get "staf": |
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#export PATH="$PATH:$HOME/bin" |
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dAlt=`date +%d` ; dAlt=`expr $dAlt % 3` |
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if [ $dAlt -eq 1 ] ; then options="$options -fast" |
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else options="$options -devel" ; fi |
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checkOut=2 ; #options="$options -do" |
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#options="$options -nc" ; checkOut=1 |
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#options="$options -q" ; checkOut=0 |
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jmc |
1.5 |
NSLOTS=$SLURM_NTASKS |
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THEDATE=`date` |
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echo '********************************************************************************' |
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echo 'Start job '$THEDATE |
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echo 'NSLOTS = '$NSLOTS |
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echo '======= NODELIST ===============================================================' |
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echo $SLURM_NODELIST |
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cat /etc/redhat-release |
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echo '======= env ====================================================================' |
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env | grep SLURM |
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echo '======= modules ================================================================' |
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module list 2>&1 |
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echo '================================================================================' |
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jmc |
1.1 |
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| 88 |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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gcmDIR="MITgcm_$sfx" |
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#- check for disk space: relative space (99%) or absolute (10.G): |
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dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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if [ $dsp -gt 99 ] ; then |
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#dsp=`df -P . | tail -1 | awk '{print $4}'` |
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#if [ $dsp -le 100000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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echo "cleaning output from $gcmDIR/verification :" |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
| 107 |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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jmc |
1.14 |
retVal=$? |
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if test "x$retVal" != x0 ; then |
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jmc |
1.1 |
echo "ERROR in tar+gzip prev outp-dir: $dd" |
| 113 |
jmc |
1.14 |
echo " on '"`hostname`"' (return val=$retVal) but continue" |
| 114 |
jmc |
1.1 |
fi |
| 115 |
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fi |
| 116 |
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done ) |
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( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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( cd $gcmDIR/verification ; ./testreport $typ -clean ) |
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echo "cvs update of dir $gcmDIR :" |
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( cd $gcmDIR ; $cmdCVS update -P -d ) 2>&1 |
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jmc |
1.14 |
retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "cvs update on '"`hostname`"' fail (return val=$retVal) => exit" |
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jmc |
1.1 |
exit |
| 125 |
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fi |
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else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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echo -n "Removing working copy: $gcmDIR ..." |
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rm -rf $gcmDIR |
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echo " done" |
| 136 |
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fi |
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# make a local copy (instead of using CVS): |
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today=`date +%Y%m%d` |
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jmc |
1.14 |
nCount=0; updFile="${srcDIR}/updated_code" |
| 140 |
jmc |
1.1 |
updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
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while [ $today -gt $updDate ] ; do |
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nCount=`expr $nCount + 1` |
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if [ $nCount -gt 40 ] ; then |
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echo " waiting too long (nCount=$nCount) for updated code" |
| 145 |
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echo " today=$today , updDate=$updDate " |
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ls -l $updFile |
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exit |
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fi |
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sleep 60 |
| 150 |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
| 151 |
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done |
| 152 |
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ls -l $updFile |
| 153 |
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echo " waited nCount=$nCount for updated code ($updDate) to copy" |
| 154 |
jmc |
1.14 |
if test -d $srcDIR/$srcCode ; then |
| 155 |
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echo -n "Make local copy of dir '$srcDIR/$srcCode' to: $gcmDIR ..." |
| 156 |
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cp -pra $srcDIR/$srcCode $gcmDIR |
| 157 |
jmc |
1.1 |
echo " done" |
| 158 |
jmc |
1.14 |
else echo " dir: $srcDIR/$srcCode missing => exit" ; exit ; fi |
| 159 |
jmc |
1.1 |
# cvs co MITgcm |
| 160 |
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#echo "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..." |
| 161 |
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#$cmdCVS co -P -d $gcmDIR MITgcm > /dev/null |
| 162 |
jmc |
1.14 |
#retVal=$? |
| 163 |
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#if test "x$retVal" != x0 ; then |
| 164 |
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# echo "cvs co on '"`hostname`"' fail (return val=$retVal) => exit" |
| 165 |
jmc |
1.1 |
# exit |
| 166 |
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#else echo " done" ; fi |
| 167 |
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#if test -d $gcmDIR/verification ; then |
| 168 |
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# for exp2add in $addExp ; do |
| 169 |
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# echo " add dir: $exp2add (from Contrib:verification_other)" |
| 170 |
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# ( cd $gcmDIR/verification ; $cmdCVS co -P -d $exp2add \ |
| 171 |
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# MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
| 172 |
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# done |
| 173 |
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# /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
| 174 |
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# /usr/bin/find $gcmDIR -type f | xargs chmod g+r |
| 175 |
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#fi |
| 176 |
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fi |
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| 178 |
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#- change dir to $gcmDIR/verification dir: |
| 179 |
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if test -e $gcmDIR/verification ; then |
| 180 |
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if [ $checkOut -lt 2 ] ; then |
| 181 |
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echo " dir $gcmDIR/verification exist" ; fi |
| 182 |
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cd $gcmDIR/verification |
| 183 |
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else |
| 184 |
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echo "no dir: $gcmDIR/verification => exit" |
| 185 |
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exit |
| 186 |
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fi |
| 187 |
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| 188 |
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echo '' |
| 189 |
jmc |
1.10 |
echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \ |
| 190 |
jmc |
1.13 |
-odir ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 191 |
jmc |
1.10 |
./testreport $options -of $OPTFILE -skd "$skipExp" \ |
| 192 |
jmc |
1.13 |
-odir ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 193 |
jmc |
1.1 |
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| 194 |
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echo '' |
| 195 |
jmc |
1.10 |
echo ../tools/do_tst_2+2 -mpi \ |
| 196 |
jmc |
1.13 |
-o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 197 |
jmc |
1.10 |
../tools/do_tst_2+2 -mpi \ |
| 198 |
jmc |
1.13 |
-o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 199 |
jmc |
1.1 |
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