/[MITgcm]/MITgcm_contrib/test_scripts/svante/test_submit_svante
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revision 1.3 by jmc, Sat Apr 16 14:55:05 2016 UTC revision 1.21 by jmc, Mon Feb 26 21:28:39 2018 UTC
# Line 8  dInWeek=`date +%a` Line 8  dInWeek=`date +%a`
8    
9  if test $# = 0  if test $# = 0
10  then  then
11    TEST_LIST='pgiMPI'    TEST_LIST='ifcMPI pgiMPI pgiAdm pgiMth'
  #if test "x$dInWeek" = xSun ; then TEST_LIST="$TEST_LIST iad ifc oad" ; fi  
12  else  else
13    TEST_LIST=$*    TEST_LIST=$*
14  fi  fi
15    
16  QSUB="qsub"  headNode=`hostname -s`
17  QSTAT="qstat"  #QSUB="qsub"
18  dNam=`hostname -s`  #QSTAT="qstat -u $USER"
19    #dNam=$headNode
20    QSUB="/usr/bin/sbatch"
21    QLIST="/usr/bin/squeue -u $USER"
22    dNam='svante'
23  HERE="$HOME/test_${dNam}"  HERE="$HOME/test_${dNam}"
24  TST_DISK="/net/fs09/d0"  TST_DISK="/net/fs09/d1/jm_c"
25  TST_DIR="$TST_DISK/jm_c/test_${dNam}"  TST_DIR="$TST_DISK/test_${dNam}"
26  logPfix='test_submit'  tmpFil="/tmp/"`basename $0`".$$"
27    #- where local copy of code is (need to be consistent with run-job scripts):
28    #srcDIR=$TST_DIR
29    srcDIR=$HERE
30    srcCode="MITgcm_today"
31    
32    logPfix='test_submit'
33  SUB_DIR="$HERE/$dNam"  SUB_DIR="$HERE/$dNam"
34  OUT_DIR="$HERE/output"  OUT_DIR="$HERE/output"
35  LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"  LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"
# Line 51  export LC_ALL="en_US.UTF-8" Line 59  export LC_ALL="en_US.UTF-8"
59  #  Turn off stack limit for FIZHI & AD-tests  #  Turn off stack limit for FIZHI & AD-tests
60  ulimit -s unlimited  ulimit -s unlimited
61    
62  if test -f /etc/profile.d/modules.sh ; then  if test -f /etc/profile.d/modules.sh    ; then . /etc/profile.d/modules.sh    ; fi
63      . /etc/profile.d/modules.sh  if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi
 fi  
64  #- load standard modules:  #- load standard modules:
65  module add fedora torque maui svante  #module add fedora slurm maui svante
66    module add slurm
67  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
68    
69  #- method to acces CVS:  #- method to access CVS:
70  cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
71    #- which GitHub repository to use and how to access it:
72      git_repo='MITgcm';  git_code='MITgcm'
73     #git_repo='altMITgcm'; #git_code='MITgcm66h'
74    #--
75      git_repo="https://github.com/$git_repo"
76     #git_repo="git://github.com/$git_repo"
77     #git_repo="git@github.com:$git_repo"
78    
 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|  
 #-- Download/Update reference version of MITgcm code:  
79  checkOut=1  checkOut=1
80  gcmDIR='MITgcm'  addExp=''
 exp2add=''  
81  updFile='updated_code'  updFile='updated_code'
82    
83  echo "cd $TST_DISK ; pwd" | tee -a $LOG_FIL  #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
84  cd $TST_DISK    | tee -a $LOG_FIL 2>&1  if [ $checkOut -ge 1 ] ; then
85  pwd             | tee -a $LOG_FIL  #-- Download/Update reference version of MITgcm code:
 if test ! -d $TST_DIR ; then  
    echo -n "Creating a working dir: $TST_DIR ..."       | tee -a $LOG_FIL  
   #/bin/rm -rf $TST_DIR  
    mkdir $TST_DIR  
    retVal=$?  
    if test "x$retVal" != x0 ; then  
       echo "Error: unable to make dir: $TST_DIR (err=$retVal ) --> Exit" | tee -a $LOG_FIL  
       exit 1  
    fi  
 fi  
 cd $TST_DIR  
86    
87  #- remove date/lock-file:    if test $srcDIR = $TST_DIR ; then
88  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi      echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL
89        cd $TST_DISK        | tee -a $LOG_FIL 2>&1
90        pwd                 | tee -a $LOG_FIL
91      fi
92      if test ! -d $srcDIR ; then
93         echo -n "Creating a working dir: $srcDIR ..."      | tee -a $LOG_FIL
94        #/bin/rm -rf $srcDIR
95         mkdir $srcDIR
96         retVal=$?
97         if test "x$retVal" != x0 ; then
98           echo "Error: unable to make dir: $srcDIR (err=$retVal ) --> Exit" | tee -a $LOG_FIL
99           exit 1
100         fi
101      fi
102      cd $srcDIR
103      pwd           | tee -a $LOG_FIL
104    
105  if [ $checkOut -eq 1 ] ; then    #- remove date/lock-file and old copy:
106    if test -d $gcmDIR/CVS ; then    if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi
107      echo -n "Update dir $gcmDIR using '$cmdCVS update -P -d' ..." | tee -a $LOG_FIL    test -e $srcCode && rm -rf $srcCode
108      echo '' >> $LOG_FIL  
109      ( cd $gcmDIR ; $cmdCVS update -P -d )               >> $LOG_FIL 2>&1    if [ $checkOut -eq 1 ] ; then
110      RETVAL=$?      if test -e $git_code/.git/config ; then
111      if test "x$RETVAL" != x0 ; then echo ''        ( cd $git_code ; git checkout master )                    | tee -a $LOG_FIL
112         echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" | tee -a $LOG_FIL        echo -n "Updating current clone ( $git_code ) ..."        | tee -a $LOG_FIL
113         exit        echo '' >> $LOG_FIL
114      else echo "  done"                                  | tee -a $LOG_FIL        ( cd $git_code ; git pull )                               >> $LOG_FIL 2>&1
115          retVal=$?
116          if test "x$retVal" != x0 ; then echo ''
117             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
118             exit
119          else echo "  done"                                        | tee -a $LOG_FIL
120          fi
121        else
122          echo "missing file: $git_code/.git/config => try a new clone"     | tee -a $LOG_FIL
123          checkOut=2
124      fi      fi
  else  
     echo "no dir: $gcmDIR/CVS => try a fresh check-out" | tee -a $LOG_FIL  
     checkOut=2  
125    fi    fi
126  fi    if [ $checkOut -eq 2 ] ; then
127  if [ $checkOut -eq 2 ] ; then      if test -e $git_code ; then
128      test -e $gcmDIR && rm -rf $gcmDIR         echo -n " removing dir: $git_code ..."           | tee -a $LOG_FIL
129      echo -n "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..."   | tee -a $LOG_FIL         rm -rf $git_code
130      $cmdCVS co -P -d $gcmDIR MITgcm > /dev/null         echo "  done"                                    | tee -a $LOG_FIL
     RETVAL=$?  
     if test "x$RETVAL" != x0 ; then echo ''             | tee -a $LOG_FIL  
       echo "cvs co on '"`hostname`"' fail (return val=$RETVAL) => exit" | tee -a $LOG_FIL  
       exit  
     else echo "  done"                                  | tee -a $LOG_FIL  
131      fi      fi
132      if test -d $gcmDIR/verification ; then      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL
133        for exp2add in $addExp ; do      git clone $git_repo/${git_code}.git 2> $tmpFil
134          echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL      retVal=$?
135          ( cd $gcmDIR/verification ; $cmdCVS co -P -d $exp2add \      if test $retVal = 0 ; then
136                         MITgcm_contrib/verification_other/$exp2add > /dev/null )         echo ' --> done!'                                | tee -a $LOG_FIL
137        done         rm -f $tmpFil
138        else echo ''                                        | tee -a $LOG_FIL
139           echo " Error: 'git clone' returned: $retVal"     | tee -a $LOG_FIL
140           cat $tmpFil ; rm -f $tmpFil
141           exit 2
142      fi      fi
143      /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs    fi
144      /usr/bin/find $gcmDIR -type f | xargs chmod g+r    #---- making a new working copy: MITgcm_today
145  fi    rsync -a $git_code/ $srcCode --exclude '.git'
146      ls -ld $srcCode                                       | tee -a $LOG_FIL
147      if test -d $srcCode/verification ; then
148        for exp2add in $addExp ; do
149          echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL
150          ( cd $srcCode/verification ; $cmdCVS co -P -d $exp2add \
151                        MITgcm_contrib/verification_other/$exp2add > /dev/null )
152        done
153      fi
154      /usr/bin/find $srcCode -type d | xargs chmod g+rxs
155      /usr/bin/find $srcCode -type f | xargs chmod g+r
156      #- update date/lock-file:
157      if test -d $srcCode/verification ; then
158        echo $today > $updFile ; sleep 2
159        ls -l $updFile                                      | tee -a $LOG_FIL
160        echo ''                                             | tee -a $LOG_FIL
161      fi
162    
163  #- update date/lock-file:  #-- Done with Download/Update of MITgcm code
 if test -d $gcmDIR/verification ; then  
   echo $today > $updFile ; sleep 2  
   ls -l $updFile                                        | tee -a $LOG_FIL  
164  fi  fi
165    #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
166    
167  #-- leave TST Dir and go back to output dir  #-- leave srcDIR and go back to output dir
168  cd $OUT_DIR  cd $OUT_DIR
 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|  
169  #-- now really do something:  #-- now really do something:
170    
171    JOB_LIST=$TEST_LIST    JOB_LIST=$TEST_LIST
# Line 139  cd $OUT_DIR Line 173  cd $OUT_DIR
173    for i in $JOB_LIST    for i in $JOB_LIST
174    do    do
175      case $i in      case $i in
       'pgiMPI') sfx='pgi_mpi' ;;  
176        'pgiAdm') sfx='pgi_adm' ;;        'pgiAdm') sfx='pgi_adm' ;;
177               *) sfx=${i}'_mpi'  ;;        'pgiMth') sfx='pgi_mth' ;;
178                 *) sfx=`echo ${i} | sed 's/MPI$/_mpi/'`  ;;
179      esac      esac
180      BATCH_SCRIPT="test_svante_$sfx"      BATCH_SCRIPT="test_${dNam}_$sfx"
181      if test -f $SUB_DIR/$BATCH_SCRIPT ; then      if test -f $SUB_DIR/$BATCH_SCRIPT ; then
182        JOB="tst_"$i        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
183        job_exist=`$QSTAT -a | grep $USER | grep $JOB | wc -l`        #  definition within $BATCH_SCRIPT slurm script
184          JOB="${i}_tst"
185          sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
186          #job_exist=`$QSTAT | grep $JOB | wc -l`
187          job_exist=`$QLIST | grep $sJob | wc -l`
188        if test "x_$job_exist" = x_0 ; then        if test "x_$job_exist" = x_0 ; then
189          #-- move previous output file          #-- move previous output file
190          outList=`ls $JOB.std??? 2> /dev/null`          outList=`ls $JOB.std??? 2> /dev/null`
# Line 169  cd $OUT_DIR Line 207  cd $OUT_DIR
207            echo -n "--> $JOB : "                         | tee -a $LOG_FIL            echo -n "--> $JOB : "                         | tee -a $LOG_FIL
208            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL
209            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
210              sleep 1
211        else        else
212            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
213            $QSTAT -a | grep $USER | grep $JOB            | tee -a $LOG_FIL            #$QSTAT | grep $JOB                           | tee -a $LOG_FIL
214              $QLIST | grep $sJob                           | tee -a $LOG_FIL
215            echo ' job already exist => skip this test'   | tee -a $LOG_FIL            echo ' job already exist => skip this test'   | tee -a $LOG_FIL
216        fi        fi
217      else      else
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