/[MITgcm]/MITgcm_contrib/test_scripts/svante/test_submit_svante
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revision 1.3 by jmc, Sat Apr 16 14:55:05 2016 UTC revision 1.14 by jmc, Fri Apr 21 19:44:26 2017 UTC
# Line 8  dInWeek=`date +%a` Line 8  dInWeek=`date +%a`
8    
9  if test $# = 0  if test $# = 0
10  then  then
11    TEST_LIST='pgiMPI'    TEST_LIST='ifcMPI pgiMPI pgiAdm pgiMth'
  #if test "x$dInWeek" = xSun ; then TEST_LIST="$TEST_LIST iad ifc oad" ; fi  
12  else  else
13    TEST_LIST=$*    TEST_LIST=$*
14  fi  fi
15    
16  QSUB="qsub"  headNode=`hostname -s`
17  QSTAT="qstat"  #QSUB="qsub"
18  dNam=`hostname -s`  #QSTAT="qstat -u $USER"
19    #dNam=$headNode
20    QSUB="/usr/bin/sbatch"
21    QLIST="/usr/bin/squeue -u $USER"
22    dNam='svante'
23  HERE="$HOME/test_${dNam}"  HERE="$HOME/test_${dNam}"
24  TST_DISK="/net/fs09/d0"  TST_DISK="/net/fs09/d0/jm_c"
25  TST_DIR="$TST_DISK/jm_c/test_${dNam}"  TST_DIR="$TST_DISK/test_${dNam}"
26  logPfix='test_submit'  logPfix='test_submit'
27    
28  SUB_DIR="$HERE/$dNam"  SUB_DIR="$HERE/$dNam"
# Line 51  export LC_ALL="en_US.UTF-8" Line 54  export LC_ALL="en_US.UTF-8"
54  #  Turn off stack limit for FIZHI & AD-tests  #  Turn off stack limit for FIZHI & AD-tests
55  ulimit -s unlimited  ulimit -s unlimited
56    
57  if test -f /etc/profile.d/modules.sh ; then  if test -f /etc/profile.d/modules.sh    ; then . /etc/profile.d/modules.sh    ; fi
58      . /etc/profile.d/modules.sh  if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi
 fi  
59  #- load standard modules:  #- load standard modules:
60  module add fedora torque maui svante  #module add fedora slurm maui svante
61    module add slurm
62  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
63    
64  #- method to acces CVS:  #- method to acces CVS:
# Line 68  gcmDIR='MITgcm' Line 71  gcmDIR='MITgcm'
71  exp2add=''  exp2add=''
72  updFile='updated_code'  updFile='updated_code'
73    
74  echo "cd $TST_DISK ; pwd" | tee -a $LOG_FIL  echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL
75  cd $TST_DISK    | tee -a $LOG_FIL 2>&1  cd $TST_DISK    | tee -a $LOG_FIL 2>&1
76  pwd             | tee -a $LOG_FIL  pwd             | tee -a $LOG_FIL
77  if test ! -d $TST_DIR ; then  if test ! -d $TST_DIR ; then
# Line 82  if test ! -d $TST_DIR ; then Line 85  if test ! -d $TST_DIR ; then
85     fi     fi
86  fi  fi
87  cd $TST_DIR  cd $TST_DIR
88    pwd             | tee -a $LOG_FIL
89    
90  #- remove date/lock-file:  #- remove date/lock-file:
91  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi
# Line 139  cd $OUT_DIR Line 143  cd $OUT_DIR
143    for i in $JOB_LIST    for i in $JOB_LIST
144    do    do
145      case $i in      case $i in
       'pgiMPI') sfx='pgi_mpi' ;;  
146        'pgiAdm') sfx='pgi_adm' ;;        'pgiAdm') sfx='pgi_adm' ;;
147               *) sfx=${i}'_mpi'  ;;        'pgiMth') sfx='pgi_mth' ;;
148                 *) sfx=`echo ${i} | sed 's/MPI$/_mpi/'`  ;;
149      esac      esac
150      BATCH_SCRIPT="test_svante_$sfx"      BATCH_SCRIPT="test_${dNam}_$sfx"
151      if test -f $SUB_DIR/$BATCH_SCRIPT ; then      if test -f $SUB_DIR/$BATCH_SCRIPT ; then
152        JOB="tst_"$i        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
153        job_exist=`$QSTAT -a | grep $USER | grep $JOB | wc -l`        #  definition within $BATCH_SCRIPT slurm script
154          JOB="${i}_tst"
155          sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
156          #job_exist=`$QSTAT | grep $JOB | wc -l`
157          job_exist=`$QLIST | grep $sJob | wc -l`
158        if test "x_$job_exist" = x_0 ; then        if test "x_$job_exist" = x_0 ; then
159          #-- move previous output file          #-- move previous output file
160          outList=`ls $JOB.std??? 2> /dev/null`          outList=`ls $JOB.std??? 2> /dev/null`
# Line 171  cd $OUT_DIR Line 179  cd $OUT_DIR
179            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
180        else        else
181            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
182            $QSTAT -a | grep $USER | grep $JOB            | tee -a $LOG_FIL            #$QSTAT | grep $JOB                           | tee -a $LOG_FIL
183              $QLIST | grep $sJob                           | tee -a $LOG_FIL
184            echo ' job already exist => skip this test'   | tee -a $LOG_FIL            echo ' job already exist => skip this test'   | tee -a $LOG_FIL
185        fi        fi
186      else      else
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