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revision 1.20 by jmc, Fri Feb 9 22:43:36 2018 UTC revision 1.27 by jmc, Mon Nov 6 13:35:50 2023 UTC
# Line 8  dInWeek=`date +%a` Line 8  dInWeek=`date +%a`
8    
9  if test $# = 0  if test $# = 0
10  then  then
11    TEST_LIST='ifcMPI pgiMPI pgiAdm pgiMth'    TEST_LIST='ifcMpi ifcAdm pgiMpi pgiAdm pgiMth'
12  else  else
13    TEST_LIST=$*    TEST_LIST=$*
14  fi  fi
15    
16  headNode=`hostname -s`  headNode=`hostname -s`
17  #QSUB="qsub"  #QSUB="qsub"
18  #QSTAT="qstat -u $USER"  #QLIST="qstat -u $USER"
19  #dNam=$headNode  #dNam=$headNode
20  QSUB="/usr/bin/sbatch"  QSUB="/usr/bin/sbatch"
21  QLIST="/usr/bin/squeue -u $USER"  QLIST="/usr/bin/squeue -u $USER"
# Line 50  if test $n -gt 0 ; then Line 50  if test $n -gt 0 ; then
50      ls -t  $logPfix.*.log | tail -"$n" | xargs rm -f      ls -t  $logPfix.*.log | tail -"$n" | xargs rm -f
51  fi  fi
52    
53    if test -d backup ; then
54      echo ' from "backup/", remove *.tar.gz files & gzip previous *.tar files'
55      n1=`ls backup/*.tar.gz | wc -l` ; n2=`ls backup/*.tar | wc -l`
56      echo " from 'backup/', remove $n1 *.tar.gz files:"    >> $LOG_FIL 2>&1
57      ( cd backup ; rm -f ??_${dNam}*.tar.gz )              >> $LOG_FIL 2>&1
58      echo "         and gzip previous $n2 *.tar files:"    >> $LOG_FIL 2>&1
59      ( cd backup ; gzip -9 ??_${dNam}*.tar ; ls -l *.tar.gz ) >> $LOG_FIL 2>&1
60    else
61      echo ' create dir "backup/" for backup tar files:'    | tee -a $LOG_FIL
62      mkdir backup
63    fi
64  #-------------------------------------------------------------  #-------------------------------------------------------------
65  # defaults  # defaults
66  #export PATH="$PATH:/usr/local/bin"  #export PATH="$PATH:/usr/local/bin"
# Line 66  if test -f /etc/profile.d/zz_modules.sh Line 77  if test -f /etc/profile.d/zz_modules.sh
77  module add slurm  module add slurm
78  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
79    
80  #- method to acces CVS:  #- method to access CVS:
81    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
82  #- and which GitHub repository to use:  #- which GitHub repository to use and how to access it:
83    git_repo='MITgcm';  git_code='MITgcm'    git_repo='MITgcm';  git_code='MITgcm' ; git_other='verification_other'
84   #git_repo='altMITgcm'; #git_code='MITgcm66h'   #git_repo='altMITgcm'; #git_code='MITgcm66h'
85    #--
86      git_repo="https://github.com/$git_repo"
87     #git_repo="git://github.com/$git_repo"
88     #git_repo="git@github.com:$git_repo"
89    
90  checkOut=1  checkOut=1
91  addExp=''  addExp=''
# Line 103  if [ $checkOut -ge 1 ] ; then Line 118  if [ $checkOut -ge 1 ] ; then
118    test -e $srcCode && rm -rf $srcCode    test -e $srcCode && rm -rf $srcCode
119    
120    if [ $checkOut -eq 1 ] ; then    if [ $checkOut -eq 1 ] ; then
121      if test -e $git_code/.git/config ; then      if test ! -e $git_code/.git/config ; then
122        ( cd $git_code ; git checkout master )                    | tee -a $LOG_FIL        echo "no file: $git_code/.git/config => try a new clone"  | tee -a $LOG_FIL
123        echo -n "Updating current clone ( $git_code ) ..."        | tee -a $LOG_FIL        checkOut=2
124        echo '' >> $LOG_FIL      fi
125        ( cd $git_code ; git pull )                               >> $LOG_FIL 2>&1      if test ! -e $git_other/.git/config ; then
126        retVal=$?        echo "no file: $git_other/.git/config => try a new clone" | tee -a $LOG_FIL
       if test "x$retVal" != x0 ; then echo ''  
          echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL  
          exit  
       else echo "  done"                                        | tee -a $LOG_FIL  
       fi  
     else  
       echo "missing file: $git_code/.git/config => try a new clone"     | tee -a $LOG_FIL  
127        checkOut=2        checkOut=2
128      fi      fi
129    fi    fi
130    if [ $checkOut -eq 2 ] ; then    if [ $checkOut -eq 2 ] ; then
131      if test -e $git_code ; then      if test -e $git_code ; then
132         echo -n " removing dir: $git_code ..."           | tee -a $LOG_FIL         echo -n " removing dir: $git_code ..."           | tee -a $LOG_FIL
133         rm -rf $git_code         rm -rf $git_code
134         echo "  done"                                    | tee -a $LOG_FIL         echo "  done"                                    | tee -a $LOG_FIL
135      fi      fi
136      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL
137      git clone https://github.com/$git_repo/${git_code}.git 2> $tmpFil      git clone $git_repo/${git_code}.git 2> $tmpFil
138        retVal=$?
139        if test $retVal = 0 ; then
140           echo ' --> done!'                                | tee -a $LOG_FIL
141           rm -f $tmpFil
142        else echo ''                                        | tee -a $LOG_FIL
143           echo " Error: 'git clone' returned: $retVal"     | tee -a $LOG_FIL
144           cat $tmpFil ; rm -f $tmpFil
145           exit 2
146        fi
147       #--
148        if test -e $git_other ; then
149           echo -n " removing dir: $git_other ..."          | tee -a $LOG_FIL
150           rm -rf $git_other
151           echo "  done"                                    | tee -a $LOG_FIL
152        fi
153        echo -n "Make a clone of $git_other from repo: $git_repo ..."       | tee -a $LOG_FIL
154        git clone $git_repo/${git_other}.git 2> $tmpFil
155      retVal=$?      retVal=$?
156      if test $retVal = 0 ; then      if test $retVal = 0 ; then
157         echo ' --> done!'                                | tee -a $LOG_FIL         echo ' --> done!'                                | tee -a $LOG_FIL
# Line 137  if [ $checkOut -ge 1 ] ; then Line 162  if [ $checkOut -ge 1 ] ; then
162         exit 2         exit 2
163      fi      fi
164    fi    fi
165      #--
166      if [ $checkOut -eq 1 ] ; then
167        echo -n "Updating current clone ( $git_code ) ..."  | tee -a $LOG_FIL
168        echo '' >> $LOG_FIL
169        ( cd $git_code ; git pull )                         >> $LOG_FIL 2>&1
170        retVal=$?
171        if test "x$retVal" != x0 ; then echo ''
172             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
173             exit
174        else echo "  done"                                  | tee -a $LOG_FIL
175        fi
176        echo "  and checkout master:"                       | tee -a $LOG_FIL
177        ( cd $git_code ; git checkout master -- . )         | tee -a $LOG_FIL
178       #---
179        echo -n "Updating current clone ( $git_other ) ..." | tee -a $LOG_FIL
180        echo '' >> $LOG_FIL
181        ( cd $git_other ; git pull )                        >> $LOG_FIL 2>&1
182        retVal=$?
183        if test "x$retVal" != x0 ; then echo ''
184             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
185             exit
186        else echo "  done"                                  | tee -a $LOG_FIL
187        fi
188        echo "  and checkout master:"                       | tee -a $LOG_FIL
189        ( cd $git_other ; git checkout master -- . )        | tee -a $LOG_FIL
190      fi
191    #---- making a new working copy: MITgcm_today    #---- making a new working copy: MITgcm_today
192    rsync -a $git_code/ $srcCode --exclude '.git'    rsync -a $git_code/ $srcCode --exclude '.git'
193    ls -ld $srcCode                                       | tee -a $LOG_FIL    ls -ld $srcCode                                       | tee -a $LOG_FIL
   if test -d $srcCode/verification ; then  
     for exp2add in $addExp ; do  
       echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL  
       ( cd $srcCode/verification ; $cmdCVS co -P -d $exp2add \  
                     MITgcm_contrib/verification_other/$exp2add > /dev/null )  
     done  
   fi  
194    /usr/bin/find $srcCode -type d | xargs chmod g+rxs    /usr/bin/find $srcCode -type d | xargs chmod g+rxs
195    /usr/bin/find $srcCode -type f | xargs chmod g+r    /usr/bin/find $srcCode -type f | xargs chmod g+r
196    #- update date/lock-file:    #- update date/lock-file:
# Line 168  cd $OUT_DIR Line 212  cd $OUT_DIR
212    NB_SUB_JOBS=0    NB_SUB_JOBS=0
213    for i in $JOB_LIST    for i in $JOB_LIST
214    do    do
215      case $i in      sfx=`echo ${i} | sed 's/^.../&_/' | tr '[:upper:]' '[:lower:]'`
       'pgiAdm') sfx='pgi_adm' ;;  
       'pgiMth') sfx='pgi_mth' ;;  
              *) sfx=`echo ${i} | sed 's/MPI$/_mpi/'`  ;;  
     esac  
216      BATCH_SCRIPT="test_${dNam}_$sfx"      BATCH_SCRIPT="test_${dNam}_$sfx"
217      if test -f $SUB_DIR/$BATCH_SCRIPT ; then      if test -f $SUB_DIR/$BATCH_SCRIPT ; then
218        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
219        #  definition within $BATCH_SCRIPT slurm script        #  definition within $BATCH_SCRIPT slurm script
220        JOB="${i}_tst"        JOB="${i}_tst"
221        sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c        sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
222        #job_exist=`$QSTAT | grep $JOB | wc -l`        #job_exist=`$QLIST | grep $JOB | wc -l`
223        job_exist=`$QLIST | grep $sJob | wc -l`        job_exist=`$QLIST | grep $sJob | wc -l`
224        if test "x_$job_exist" = x_0 ; then        if test "x_$job_exist" = x_0 ; then
225          #-- move previous output file          #-- move previous output file
# Line 200  cd $OUT_DIR Line 240  cd $OUT_DIR
240          else echo " no old output files from job '$JOB'" | tee -a $LOG_FIL          else echo " no old output files from job '$JOB'" | tee -a $LOG_FIL
241          fi          fi
242          #-- submit job          #-- submit job
243            echo -n "--> $JOB : "                         | tee -a $LOG_FIL            echo -n "--> $JOB : $BATCH_SCRIPT , "         | tee -a $LOG_FIL
244            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL
245            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
246            sleep 1            sleep 1
247        else        else
248            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
           #$QSTAT | grep $JOB                           | tee -a $LOG_FIL  
249            $QLIST | grep $sJob                           | tee -a $LOG_FIL            $QLIST | grep $sJob                           | tee -a $LOG_FIL
250            echo ' job already exist => skip this test'   | tee -a $LOG_FIL            echo ' job already exist => skip this test'   | tee -a $LOG_FIL
251        fi        fi
# Line 214  cd $OUT_DIR Line 253  cd $OUT_DIR
253         echo 'no file:' $BATCH_SCRIPT 'to submit'        | tee -a $LOG_FIL         echo 'no file:' $BATCH_SCRIPT 'to submit'        | tee -a $LOG_FIL
254      fi      fi
255    done    done
256    echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'"      >> $LOG_FIL    #echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'"     >> $LOG_FIL
257      echo "Submitted $NB_SUB_JOBS jobs from dir: $SUB_DIR" | tee -a $LOG_FIL
258    echo -n '-- Finished at: '                            | tee -a $LOG_FIL    echo -n '-- Finished at: '                            | tee -a $LOG_FIL
259    date                                                  | tee -a $LOG_FIL    date                                                  | tee -a $LOG_FIL
260    
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