/[MITgcm]/MITgcm_contrib/test_scripts/svante/test_submit_svante
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revision 1.20 by jmc, Fri Feb 9 22:43:36 2018 UTC revision 1.26 by jmc, Sun Feb 19 14:56:32 2023 UTC
# Line 8  dInWeek=`date +%a` Line 8  dInWeek=`date +%a`
8    
9  if test $# = 0  if test $# = 0
10  then  then
11    TEST_LIST='ifcMPI pgiMPI pgiAdm pgiMth'    TEST_LIST='ifcMpi ifcAdm pgiMpi pgiAdm pgiMth'
12  else  else
13    TEST_LIST=$*    TEST_LIST=$*
14  fi  fi
15    
16  headNode=`hostname -s`  headNode=`hostname -s`
17  #QSUB="qsub"  #QSUB="qsub"
18  #QSTAT="qstat -u $USER"  #QLIST="qstat -u $USER"
19  #dNam=$headNode  #dNam=$headNode
20  QSUB="/usr/bin/sbatch"  QSUB="/usr/bin/sbatch"
21  QLIST="/usr/bin/squeue -u $USER"  QLIST="/usr/bin/squeue -u $USER"
# Line 66  if test -f /etc/profile.d/zz_modules.sh Line 66  if test -f /etc/profile.d/zz_modules.sh
66  module add slurm  module add slurm
67  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
68    
69  #- method to acces CVS:  #- method to access CVS:
70    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
71  #- and which GitHub repository to use:  #- which GitHub repository to use and how to access it:
72    git_repo='MITgcm';  git_code='MITgcm'    git_repo='MITgcm';  git_code='MITgcm' ; git_other='verification_other'
73   #git_repo='altMITgcm'; #git_code='MITgcm66h'   #git_repo='altMITgcm'; #git_code='MITgcm66h'
74    #--
75      git_repo="https://github.com/$git_repo"
76     #git_repo="git://github.com/$git_repo"
77     #git_repo="git@github.com:$git_repo"
78    
79  checkOut=1  checkOut=1
80  addExp=''  addExp=''
# Line 103  if [ $checkOut -ge 1 ] ; then Line 107  if [ $checkOut -ge 1 ] ; then
107    test -e $srcCode && rm -rf $srcCode    test -e $srcCode && rm -rf $srcCode
108    
109    if [ $checkOut -eq 1 ] ; then    if [ $checkOut -eq 1 ] ; then
110      if test -e $git_code/.git/config ; then      if test ! -e $git_code/.git/config ; then
111        ( cd $git_code ; git checkout master )                    | tee -a $LOG_FIL        echo "no file: $git_code/.git/config => try a new clone"  | tee -a $LOG_FIL
112        echo -n "Updating current clone ( $git_code ) ..."        | tee -a $LOG_FIL        checkOut=2
113        echo '' >> $LOG_FIL      fi
114        ( cd $git_code ; git pull )                               >> $LOG_FIL 2>&1      if test ! -e $git_other/.git/config ; then
115        retVal=$?        echo "no file: $git_other/.git/config => try a new clone" | tee -a $LOG_FIL
       if test "x$retVal" != x0 ; then echo ''  
          echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL  
          exit  
       else echo "  done"                                        | tee -a $LOG_FIL  
       fi  
     else  
       echo "missing file: $git_code/.git/config => try a new clone"     | tee -a $LOG_FIL  
116        checkOut=2        checkOut=2
117      fi      fi
118    fi    fi
119    if [ $checkOut -eq 2 ] ; then    if [ $checkOut -eq 2 ] ; then
120      if test -e $git_code ; then      if test -e $git_code ; then
121         echo -n " removing dir: $git_code ..."           | tee -a $LOG_FIL         echo -n " removing dir: $git_code ..."           | tee -a $LOG_FIL
122         rm -rf $git_code         rm -rf $git_code
123         echo "  done"                                    | tee -a $LOG_FIL         echo "  done"                                    | tee -a $LOG_FIL
124      fi      fi
125      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL
126      git clone https://github.com/$git_repo/${git_code}.git 2> $tmpFil      git clone $git_repo/${git_code}.git 2> $tmpFil
127        retVal=$?
128        if test $retVal = 0 ; then
129           echo ' --> done!'                                | tee -a $LOG_FIL
130           rm -f $tmpFil
131        else echo ''                                        | tee -a $LOG_FIL
132           echo " Error: 'git clone' returned: $retVal"     | tee -a $LOG_FIL
133           cat $tmpFil ; rm -f $tmpFil
134           exit 2
135        fi
136       #--
137        if test -e $git_other ; then
138           echo -n " removing dir: $git_other ..."          | tee -a $LOG_FIL
139           rm -rf $git_other
140           echo "  done"                                    | tee -a $LOG_FIL
141        fi
142        echo -n "Make a clone of $git_other from repo: $git_repo ..."       | tee -a $LOG_FIL
143        git clone $git_repo/${git_other}.git 2> $tmpFil
144      retVal=$?      retVal=$?
145      if test $retVal = 0 ; then      if test $retVal = 0 ; then
146         echo ' --> done!'                                | tee -a $LOG_FIL         echo ' --> done!'                                | tee -a $LOG_FIL
# Line 137  if [ $checkOut -ge 1 ] ; then Line 151  if [ $checkOut -ge 1 ] ; then
151         exit 2         exit 2
152      fi      fi
153    fi    fi
154      #--
155      if [ $checkOut -eq 1 ] ; then
156        echo -n "Updating current clone ( $git_code ) ..."  | tee -a $LOG_FIL
157        echo '' >> $LOG_FIL
158        ( cd $git_code ; git pull )                         >> $LOG_FIL 2>&1
159        retVal=$?
160        if test "x$retVal" != x0 ; then echo ''
161             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
162             exit
163        else echo "  done"                                  | tee -a $LOG_FIL
164        fi
165        echo "  and checkout master:"                       | tee -a $LOG_FIL
166        ( cd $git_code ; git checkout master -- . )         | tee -a $LOG_FIL
167       #---
168        echo -n "Updating current clone ( $git_other ) ..." | tee -a $LOG_FIL
169        echo '' >> $LOG_FIL
170        ( cd $git_other ; git pull )                        >> $LOG_FIL 2>&1
171        retVal=$?
172        if test "x$retVal" != x0 ; then echo ''
173             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
174             exit
175        else echo "  done"                                  | tee -a $LOG_FIL
176        fi
177        echo "  and checkout master:"                       | tee -a $LOG_FIL
178        ( cd $git_other ; git checkout master -- . )        | tee -a $LOG_FIL
179      fi
180    #---- making a new working copy: MITgcm_today    #---- making a new working copy: MITgcm_today
181    rsync -a $git_code/ $srcCode --exclude '.git'    rsync -a $git_code/ $srcCode --exclude '.git'
182    ls -ld $srcCode                                       | tee -a $LOG_FIL    ls -ld $srcCode                                       | tee -a $LOG_FIL
   if test -d $srcCode/verification ; then  
     for exp2add in $addExp ; do  
       echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL  
       ( cd $srcCode/verification ; $cmdCVS co -P -d $exp2add \  
                     MITgcm_contrib/verification_other/$exp2add > /dev/null )  
     done  
   fi  
183    /usr/bin/find $srcCode -type d | xargs chmod g+rxs    /usr/bin/find $srcCode -type d | xargs chmod g+rxs
184    /usr/bin/find $srcCode -type f | xargs chmod g+r    /usr/bin/find $srcCode -type f | xargs chmod g+r
185    #- update date/lock-file:    #- update date/lock-file:
# Line 168  cd $OUT_DIR Line 201  cd $OUT_DIR
201    NB_SUB_JOBS=0    NB_SUB_JOBS=0
202    for i in $JOB_LIST    for i in $JOB_LIST
203    do    do
204      case $i in      sfx=`echo ${i} | sed 's/^.../&_/' | tr '[:upper:]' '[:lower:]'`
       'pgiAdm') sfx='pgi_adm' ;;  
       'pgiMth') sfx='pgi_mth' ;;  
              *) sfx=`echo ${i} | sed 's/MPI$/_mpi/'`  ;;  
     esac  
205      BATCH_SCRIPT="test_${dNam}_$sfx"      BATCH_SCRIPT="test_${dNam}_$sfx"
206      if test -f $SUB_DIR/$BATCH_SCRIPT ; then      if test -f $SUB_DIR/$BATCH_SCRIPT ; then
207        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match        #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
208        #  definition within $BATCH_SCRIPT slurm script        #  definition within $BATCH_SCRIPT slurm script
209        JOB="${i}_tst"        JOB="${i}_tst"
210        sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c        sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
211        #job_exist=`$QSTAT | grep $JOB | wc -l`        #job_exist=`$QLIST | grep $JOB | wc -l`
212        job_exist=`$QLIST | grep $sJob | wc -l`        job_exist=`$QLIST | grep $sJob | wc -l`
213        if test "x_$job_exist" = x_0 ; then        if test "x_$job_exist" = x_0 ; then
214          #-- move previous output file          #-- move previous output file
# Line 200  cd $OUT_DIR Line 229  cd $OUT_DIR
229          else echo " no old output files from job '$JOB'" | tee -a $LOG_FIL          else echo " no old output files from job '$JOB'" | tee -a $LOG_FIL
230          fi          fi
231          #-- submit job          #-- submit job
232            echo -n "--> $JOB : "                         | tee -a $LOG_FIL            echo -n "--> $JOB : $BATCH_SCRIPT , "         | tee -a $LOG_FIL
233            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL
234            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
235            sleep 1            sleep 1
236        else        else
237            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
           #$QSTAT | grep $JOB                           | tee -a $LOG_FIL  
238            $QLIST | grep $sJob                           | tee -a $LOG_FIL            $QLIST | grep $sJob                           | tee -a $LOG_FIL
239            echo ' job already exist => skip this test'   | tee -a $LOG_FIL            echo ' job already exist => skip this test'   | tee -a $LOG_FIL
240        fi        fi
# Line 214  cd $OUT_DIR Line 242  cd $OUT_DIR
242         echo 'no file:' $BATCH_SCRIPT 'to submit'        | tee -a $LOG_FIL         echo 'no file:' $BATCH_SCRIPT 'to submit'        | tee -a $LOG_FIL
243      fi      fi
244    done    done
245    echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'"      >> $LOG_FIL    #echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'"     >> $LOG_FIL
246      echo "Submitted $NB_SUB_JOBS jobs from dir: $SUB_DIR" | tee -a $LOG_FIL
247    echo -n '-- Finished at: '                            | tee -a $LOG_FIL    echo -n '-- Finished at: '                            | tee -a $LOG_FIL
248    date                                                  | tee -a $LOG_FIL    date                                                  | tee -a $LOG_FIL
249    
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