/[MITgcm]/MITgcm_contrib/test_scripts/svante/test_submit_svante
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revision 1.14 by jmc, Fri Apr 21 19:44:26 2017 UTC revision 1.18 by jmc, Wed Feb 7 21:13:57 2018 UTC
# Line 21  QSUB="/usr/bin/sbatch" Line 21  QSUB="/usr/bin/sbatch"
21  QLIST="/usr/bin/squeue -u $USER"  QLIST="/usr/bin/squeue -u $USER"
22  dNam='svante'  dNam='svante'
23  HERE="$HOME/test_${dNam}"  HERE="$HOME/test_${dNam}"
24  TST_DISK="/net/fs09/d0/jm_c"  TST_DISK="/net/fs09/d1/jm_c"
25  TST_DIR="$TST_DISK/test_${dNam}"  TST_DIR="$TST_DISK/test_${dNam}"
26  logPfix='test_submit'  tmpFil="/tmp/"`basename $0`".$$"
27    #- where local copy of code is (need to be consistent with run-job scripts):
28    #srcDIR=$TST_DIR
29    srcDIR=$HERE
30    srcCode="MITgcm_today"
31    
32    logPfix='test_submit'
33  SUB_DIR="$HERE/$dNam"  SUB_DIR="$HERE/$dNam"
34  OUT_DIR="$HERE/output"  OUT_DIR="$HERE/output"
35  LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"  LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"
# Line 62  module add slurm Line 67  module add slurm
67  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
68    
69  #- method to acces CVS:  #- method to acces CVS:
70  cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
71    #- and which GitHub repository to use:
72      git_repo='MITgcm';  git_code='MITgcm'
73     #git_repo='altMITgcm'; #git_code='MITgcm66h'
74    
 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|  
 #-- Download/Update reference version of MITgcm code:  
75  checkOut=1  checkOut=1
76  gcmDIR='MITgcm'  addExp=''
 exp2add=''  
77  updFile='updated_code'  updFile='updated_code'
78    
79  echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL  #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
80  cd $TST_DISK    | tee -a $LOG_FIL 2>&1  #-- Download/Update reference version of MITgcm code:
81  pwd             | tee -a $LOG_FIL  if [ $checkOut -ge 1 ] ; then
 if test ! -d $TST_DIR ; then  
    echo -n "Creating a working dir: $TST_DIR ..."       | tee -a $LOG_FIL  
   #/bin/rm -rf $TST_DIR  
    mkdir $TST_DIR  
    retVal=$?  
    if test "x$retVal" != x0 ; then  
       echo "Error: unable to make dir: $TST_DIR (err=$retVal ) --> Exit" | tee -a $LOG_FIL  
       exit 1  
    fi  
 fi  
 cd $TST_DIR  
 pwd             | tee -a $LOG_FIL  
82    
83  #- remove date/lock-file:    if test $srcDIR = $TST_DIR ; then
84  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi      echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL
85        cd $TST_DISK        | tee -a $LOG_FIL 2>&1
86        pwd                 | tee -a $LOG_FIL
87      fi
88      if test ! -d $srcDIR ; then
89         echo -n "Creating a working dir: $srcDIR ..."      | tee -a $LOG_FIL
90        #/bin/rm -rf $srcDIR
91         mkdir $srcDIR
92         retVal=$?
93         if test "x$retVal" != x0 ; then
94           echo "Error: unable to make dir: $srcDIR (err=$retVal ) --> Exit" | tee -a $LOG_FIL
95           exit 1
96         fi
97      fi
98      cd $srcDIR
99      pwd           | tee -a $LOG_FIL
100    
101  if [ $checkOut -eq 1 ] ; then    #- remove date/lock-file and old copy:
102    if test -d $gcmDIR/CVS ; then    if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi
103      echo -n "Update dir $gcmDIR using '$cmdCVS update -P -d' ..." | tee -a $LOG_FIL    test -e $srcCode && rm -rf $srcCode
104      echo '' >> $LOG_FIL  
105      ( cd $gcmDIR ; $cmdCVS update -P -d )               >> $LOG_FIL 2>&1    if [ $checkOut -eq 1 ] ; then
106      RETVAL=$?      if test -e $git_code/.git/config ; then
107      if test "x$RETVAL" != x0 ; then echo ''        echo -n "Updating current clone ( $git_code ) ..."        | tee -a $LOG_FIL
108         echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" | tee -a $LOG_FIL        echo '' >> $LOG_FIL
109         exit        ( cd $git_code ; git pull )                               >> $LOG_FIL 2>&1
110      else echo "  done"                                  | tee -a $LOG_FIL        retVal=$?
111          if test "x$retVal" != x0 ; then echo ''
112             echo "'git pull' on '"`hostname`"' fail (return val=$retVal) => exit" | tee -a $LOG_FIL
113             exit
114          else echo "  done"                                        | tee -a $LOG_FIL
115          fi
116        else
117          echo "missing file: $git_code/.git/config => try a new clone"     | tee -a $LOG_FIL
118          checkOut=2
119      fi      fi
  else  
     echo "no dir: $gcmDIR/CVS => try a fresh check-out" | tee -a $LOG_FIL  
     checkOut=2  
120    fi    fi
121  fi    if [ $checkOut -eq 2 ] ; then
122  if [ $checkOut -eq 2 ] ; then      echo -n "Make a clone of $git_code from repo: $git_repo ..."        | tee -a $LOG_FIL
123      test -e $gcmDIR && rm -rf $gcmDIR      git clone https://github.com/$git_repo/${git_code}.git 2> $tmpFil
124      echo -n "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..."   | tee -a $LOG_FIL      retVal=$?
125      $cmdCVS co -P -d $gcmDIR MITgcm > /dev/null      if test $retVal = 0 ; then
126      RETVAL=$?         echo ' --> done!'                                | tee -a $LOG_FIL
127      if test "x$RETVAL" != x0 ; then echo ''             | tee -a $LOG_FIL         rm -f $tmpFil
128        echo "cvs co on '"`hostname`"' fail (return val=$RETVAL) => exit" | tee -a $LOG_FIL      else echo ''                                        | tee -a $LOG_FIL
129        exit         echo " Error: 'git clone' returned: $retVal"     | tee -a $LOG_FIL
130      else echo "  done"                                  | tee -a $LOG_FIL         cat $tmpFil ; rm -f $tmpFil
131      fi         exit 2
     if test -d $gcmDIR/verification ; then  
       for exp2add in $addExp ; do  
         echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL  
         ( cd $gcmDIR/verification ; $cmdCVS co -P -d $exp2add \  
                        MITgcm_contrib/verification_other/$exp2add > /dev/null )  
       done  
132      fi      fi
133      /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs    fi
134      /usr/bin/find $gcmDIR -type f | xargs chmod g+r    #---- making a new working copy: MITgcm_today
135  fi    ( cd $git_code ; git checkout master )
136      rsync -a $git_code/ $srcCode --exclude '.git'
137      if test -d $srcCode/verification ; then
138        for exp2add in $addExp ; do
139          echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $LOG_FIL
140          ( cd $srcCode/verification ; $cmdCVS co -P -d $exp2add \
141                        MITgcm_contrib/verification_other/$exp2add > /dev/null )
142        done
143      fi
144      /usr/bin/find $srcCode -type d | xargs chmod g+rxs
145      /usr/bin/find $srcCode -type f | xargs chmod g+r
146      #- update date/lock-file:
147      if test -d $srcCode/verification ; then
148        echo $today > $updFile ; sleep 2
149        ls -l $updFile                                      | tee -a $LOG_FIL
150      fi
151    
152  #- update date/lock-file:  #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
153  if test -d $gcmDIR/verification ; then  #-- Done with Download/Update of MITgcm code
   echo $today > $updFile ; sleep 2  
   ls -l $updFile                                        | tee -a $LOG_FIL  
154  fi  fi
155    
156  #-- leave TST Dir and go back to output dir  #-- leave srcDIR and go back to output dir
157  cd $OUT_DIR  cd $OUT_DIR
 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|  
158  #-- now really do something:  #-- now really do something:
159    
160    JOB_LIST=$TEST_LIST    JOB_LIST=$TEST_LIST
# Line 177  cd $OUT_DIR Line 196  cd $OUT_DIR
196            echo -n "--> $JOB : "                         | tee -a $LOG_FIL            echo -n "--> $JOB : "                         | tee -a $LOG_FIL
197            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL            $QSUB $SUB_DIR/$BATCH_SCRIPT                  | tee -a $LOG_FIL
198            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
199              sleep 1
200        else        else
201            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
202            #$QSTAT | grep $JOB                           | tee -a $LOG_FIL            #$QSTAT | grep $JOB                           | tee -a $LOG_FIL
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