/[MITgcm]/MITgcm_contrib/test_scripts/svante/test_submit_svante
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revision 1.1 by jmc, Sun Nov 8 17:33:13 2015 UTC revision 1.9 by jmc, Sun Jan 15 17:32:16 2017 UTC
# Line 14  else Line 14  else
14    TEST_LIST=$*    TEST_LIST=$*
15  fi  fi
16    
17  QSUB="qsub"  headNode=`hostname -s`
18  QSTAT="qstat"  #QSUB="qsub"
19  dNam=`hostname -s`  #QSTAT="qstat -u $USER"
20  HERE="$HOME/test_$dNam"  #dNam=$headNode
21  TST_DIR="/net/fs09/d0/jm_c/test_${dNam}"  QSUB="/usr/bin/sbatch"
22    #QSTAT="/usr/bin/qstat -u $USER"
23    SLIST="/usr/bin/squeue -u $USER"
24    dNam='svante'
25    HERE="$HOME/test_${dNam}"
26    TST_DISK="/net/fs09/d0/jm_c"
27    TST_DIR="$TST_DISK/test_${dNam}"
28  logPfix='test_submit'  logPfix='test_submit'
29    
30  SUB_DIR="$HERE/$dNam"  SUB_DIR="$HERE/$dNam"
# Line 50  export LC_ALL="en_US.UTF-8" Line 56  export LC_ALL="en_US.UTF-8"
56  #  Turn off stack limit for FIZHI & AD-tests  #  Turn off stack limit for FIZHI & AD-tests
57  ulimit -s unlimited  ulimit -s unlimited
58    
59  if test -f /etc/profile.d/modules.sh ; then  if test -f /etc/profile.d/modules.sh    ; then . /etc/profile.d/modules.sh    ; fi
60      . /etc/profile.d/modules.sh  if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi
 fi  
61  #- load standard modules:  #- load standard modules:
62  module add fedora torque maui svante  #module add fedora slurm maui svante
63    module add slurm
64  module list                                             >> $LOG_FIL 2>&1  module list                                             >> $LOG_FIL 2>&1
65    
66  #- method to acces CVS:  #- method to acces CVS:
# Line 67  gcmDIR='MITgcm' Line 73  gcmDIR='MITgcm'
73  exp2add=''  exp2add=''
74  updFile='updated_code'  updFile='updated_code'
75    
76    echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL
77    cd $TST_DISK    | tee -a $LOG_FIL 2>&1
78    pwd             | tee -a $LOG_FIL
79  if test ! -d $TST_DIR ; then  if test ! -d $TST_DIR ; then
80     echo -n "Creating a working dir: $TST_DIR ..."       | tee -a $LOG_FIL     echo -n "Creating a working dir: $TST_DIR ..."       | tee -a $LOG_FIL
81     /bin/rm -rf $TST_DIR    #/bin/rm -rf $TST_DIR
82     mkdir $TST_DIR     mkdir $TST_DIR
83     retVal=$?     retVal=$?
84     if test "x$retVal" != x0 ; then     if test "x$retVal" != x0 ; then
# Line 78  if test ! -d $TST_DIR ; then Line 87  if test ! -d $TST_DIR ; then
87     fi     fi
88  fi  fi
89  cd $TST_DIR  cd $TST_DIR
90    pwd             | tee -a $LOG_FIL
91    
92  #- remove date/lock-file:  #- remove date/lock-file:
93  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi  if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi
# Line 141  cd $OUT_DIR Line 151  cd $OUT_DIR
151      esac      esac
152      BATCH_SCRIPT="test_svante_$sfx"      BATCH_SCRIPT="test_svante_$sfx"
153      if test -f $SUB_DIR/$BATCH_SCRIPT ; then      if test -f $SUB_DIR/$BATCH_SCRIPT ; then
154          #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
155          #  definition within $BATCH_SCRIPT slurm script
156        JOB="tst_"$i        JOB="tst_"$i
157        job_exist=`$QSTAT -a | grep $USER | grep $JOB | wc -l`        sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
158          #job_exist=`$QSTAT | grep $JOB | wc -l`
159          job_exist=`$QLIST | grep $sJob | wc -l`
160        if test "x_$job_exist" = x_0 ; then        if test "x_$job_exist" = x_0 ; then
161          #-- move previous output file          #-- move previous output file
162          outList=`ls $JOB.std??? 2> /dev/null`          outList=`ls $JOB.std??? 2> /dev/null`
# Line 167  cd $OUT_DIR Line 181  cd $OUT_DIR
181            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`            NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
182        else        else
183            echo "--> $JOB :"                             | tee -a $LOG_FIL            echo "--> $JOB :"                             | tee -a $LOG_FIL
184            $QSTAT -a | grep $USER | grep $JOB            | tee -a $LOG_FIL            #$QSTAT | grep $JOB                           | tee -a $LOG_FIL
185              $QLIST | grep $sJob                           | tee -a $LOG_FIL
186            echo ' job already exist => skip this test'   | tee -a $LOG_FIL            echo ' job already exist => skip this test'   | tee -a $LOG_FIL
187        fi        fi
188      else      else
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