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jmc |
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#! /usr/bin/env bash |
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# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/test_svante.sh,v 1.3 2015/04/11 14:21:18 jmc Exp $ |
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# Test script for MITgcm to run on head-node of svante cluster |
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# defaults |
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#export PATH="$PATH:/usr/local/bin" |
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if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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# Turn off stack limit for FIZHI & AD-tests |
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ulimit -s unlimited |
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if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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#- load standard modules: |
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module add fedora torque maui svante |
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module list |
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#- method to acces CVS: |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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QSUB="qsub" |
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QSTAT="qstat" |
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dNam=`hostname -s` |
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HERE="$HOME/test_${dNam}" |
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SUB_DIR="$HERE/$dNam" |
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OUT_DIR="$HERE/output" |
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TST_DIR="/net/fs09/d0/jm_c/test_${dNam}" |
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#SUB_DIR="$HERE/temp" |
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# checkOut=2 : download new code ; |
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# =1 : update code (if no existing code -> swith to 2) |
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# =0 : use existing code (if no existing code -> swith to 2) |
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checkOut=1 |
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option= |
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dInWeek=`date +%a` |
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TODAY=`date +%d` |
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#tst_list='gads gadm gfo+rs gmpi gmth gmp2+rs ifc pgi' |
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#if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi |
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tst_list='ifc+rs' |
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#option="-nc" ; checkOut=1 |
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#option="-q" ; checkOut=0 |
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tdir=$TST_DIR |
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if test ! -d $TST_DIR ; then |
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echo -n "Creating a working dir: $TST_DIR ..." |
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/bin/rm -rf $TST_DIR |
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mkdir $TST_DIR |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "Error: unable to make dir: $TST_DIR (err=$retVal ) --> Exit" |
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exit 1 |
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fi |
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fi |
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cd $TST_DIR |
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#------------------------------------------------------------------------ |
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#firstTst=`echo $tst_list | awk '{print $1}'` |
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#last_Tst=`echo $tst_list | awk '{print $NF}'` |
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for tt in $tst_list |
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do |
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echo "================================================================" |
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newCode=$checkOut |
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typ=`echo $tt | sed 's/+rs//'` |
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gcmDIR="MITgcm_$typ" |
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tst2submit="run_tst_$typ" |
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addExp='' |
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LOG_FIL=$OUT_DIR/output_${typ} |
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#- check day and time: |
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curDay=`date +%d` ; curHour=`date +%H` |
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if [ $curDay -ne $TODAY ] ; then |
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date ; echo "day is over => skip test $typ" |
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continue |
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fi |
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if [ $curHour -ge 18 ] ; then |
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date ; echo "too late to run test $typ" |
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continue |
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fi |
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#- check for unfinished jobs |
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job_exist=`$QSTAT -a | grep $USER | grep $tst2submit | wc -l` |
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if test "x$job_exist" != x0 ; then |
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echo $tst2submit |
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echo "job '$tst2submit' still in queue:" |
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$QSTAT -a | grep $USER | grep $tst2submit |
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echo " => skip this test" |
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continue |
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fi |
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#- clean-up old output files |
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rm -f ${LOG_FIL}*.old $OUT_DIR/$tst2submit.std???.old |
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oldS=`ls $LOG_FIL $OUT_DIR/$tst2submit.std??? 2> /dev/null` |
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for xx in $oldS ; do mv $xx $xx.old ; done |
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#for xx in $oldS ; do |
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# if test -f $xx.sav ; then mv $xx.sav $xx.old ; fi |
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# mv $xx $xx.sav |
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#done |
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if test -d prev ; then |
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#-- save previous summary: tr_out.txt* tst_2+2_out.txt |
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oldS=`( cd ${gcmDIR}/verification ; ls t*_out.txt* ) 2> /dev/null` |
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for xx in $oldS ; do |
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#ss=`/bin/ls -l ${gcmDIR}/verification/$xx | awk '{print $6 $7}'` |
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ss=`/bin/ls -l --time-style=iso ${gcmDIR}/verification/$xx | awk '{print $6}'` |
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yy=`echo $xx | sed -e "s/\.txt.old/.$typ.c/" \ |
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-e "s/2_out.txt/2.$typ./" -e "s/\.txt/.$typ.r/"` |
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cp -p ${gcmDIR}/verification/$xx prev/${yy}$ss |
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done |
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fi |
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touch $LOG_FIL |
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#- clean and update code |
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if [ $newCode -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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echo "cleaning output from $gcmDIR/verification :" | tee -a $LOG_FIL |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}*_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d tr_${dNam}_????????_? ??_${dNam}-${typ}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$retVal) but continue" |
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fi |
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fi |
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done ) |
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if test $tt != $typ ; then |
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( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) >> $LOG_FIL 2>&1 |
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fi |
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( cd $gcmDIR/verification ; ./testreport -clean ) >> $LOG_FIL 2>&1 |
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echo "cvs update of dir $gcmDIR :" | tee -a $LOG_FIL |
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( cd $gcmDIR ; $cmdCVS update -P -d ) >> $LOG_FIL 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "cvs update on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" | tee -a $LOG_FIL |
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newCode=2 |
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fi |
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fi |
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#- download new code |
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if [ $newCode -eq 2 ] ; then |
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test -e $gcmDIR && rm -rf $gcmDIR |
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echo -n "Downloading the MITgcm code using: $cmdCVS ..." | tee -a $LOG_FIL |
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$cmdCVS co -P -d $gcmDIR MITgcm > /dev/null |
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echo " done" | tee -a $LOG_FIL |
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for exp2add in $addExp ; do |
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echo " add dir: $exp2add (from Contrib:verification_other)"| tee -a $LOG_FIL |
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( cd $gcmDIR/verification ; $cmdCVS co -P -d $exp2add \ |
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MITgcm_contrib/verification_other/$exp2add > /dev/null 2>&1 ) |
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done |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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fi |
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#--------------------------------------------------- |
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#-- set the testreport command: |
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comm="./testreport" |
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# if test $typ = $typ = 'gads' -o $typ = 'gadm' ; then |
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# comm="$comm -adm" |
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# elif test $typ = 'oad' ; then |
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# comm="$comm -oad" |
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# elif test $typ = 'tlm' ; then |
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# comm="$comm -tlm" |
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# elif test $typ = 'gmth' -o $typ = 'gmp2' ; then |
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# export GOMP_STACKSIZE=400m |
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# export OMP_NUM_THREADS=2 |
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# comm="$comm -mth" |
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# else |
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# comm="$comm -md cyrus-makedepend" |
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# comm="$comm -t hs94.cs-32x32x5" |
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# fi |
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if test "x$dInWeek" = xSun ; then |
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comm="$comm -fast" |
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#else |
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# comm="$comm -devel" |
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fi |
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#-- set the optfile (+ mpi & match-precision) |
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MPI=0 ; MC=13 |
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case $typ in |
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'gfo'|'gads'|'oad'|'tlm'|'gmth') comm="$comm -match $MC -devel" |
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
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'ifc') MPI=6; #comm="$comm -devel" |
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OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; |
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'pgi') MPI=6; #comm="$comm -devel" |
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OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; |
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'gadm'|'gmpi'|'gmp2') MPI=6; comm="$comm -match $MC -devel" |
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if test $typ = 'gmp2' ; then MPI=3 ; fi |
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
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*) OPTFILE= ;; |
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esac |
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#-- set MPI command: |
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# if test $MPI != 0 ; then |
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# fi |
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#-- set specific Env Vars: |
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#if test $typ = 'oad' ; then |
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# source ~jmc/mitgcm/bin/setenv_OpenAD.sh |
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#fi |
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if test $typ = 'ifc' ; then |
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module add intel |
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module add mvapich2 |
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fi |
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#if test $typ = 'pgi' ; then |
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#fi |
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#-- run the testreport command: |
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echo -n "Running testreport using" | tee -a $LOG_FIL |
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if test "x$OPTFILE" != x ; then |
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comm="$comm -of=$OPTFILE" |
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fi |
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if test $MPI != 0 ; then comm="$comm -MPI $MPI" ; fi |
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echo " -norun option ('-nr'):" | tee -a $LOG_FIL |
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comm="$comm -nr" |
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if test "x$option" != x ; then comm="$comm $option" ; fi |
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echo " \"eval $comm\"" | tee -a $LOG_FIL |
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echo "======================" |
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( cd $gcmDIR/verification |
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eval $comm >> $LOG_FIL 2>&1 |
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) |
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#sed -n "/^An email /,/^======== End of testreport / p" $LOG_FIL |
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sed -n "/^No results email was sent/,/^======== End of testreport / p" $LOG_FIL |
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echo "" | tee -a $LOG_FIL |
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#-- submit PBS script to run |
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if test -e $SUB_DIR/${tst2submit}.pbs ; then |
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echo " submit PBS bach script '$SUB_DIR/${tst2submit}.pbs'" | tee -a $LOG_FIL |
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$QSUB $SUB_DIR/${tst2submit}.pbs | tee -a $LOG_FIL |
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echo " job '$tst2submit' in queue:" | tee -a $LOG_FIL |
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$QSTAT -a | grep $USER | grep $tst2submit | tee -a $LOG_FIL |
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else |
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echo " no PBS script '$SUB_DIR/${tst2submit}.pbs' to submit"| tee -a $LOG_FIL |
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continue |
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fi |
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#-- also test restart (test 2+2=4) |
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# if test $tt != $typ ; then |
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# echo "testing restart using:" | tee -a $LOG_FIL |
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# comm="../tools/do_tst_2+2 -o $dNam -a jmc@mitgcm.org" |
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# if test $MPI = 0 ; then |
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# echo " \"$comm\"" | tee -a $LOG_FIL |
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# echo "======================" |
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# $comm >> $LOG_FIL 2>&1 |
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# else |
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# echo " \"$comm -mpi\"" | tee -a $LOG_FIL |
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# echo "======================" |
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# $comm -mpi >> $LOG_FIL 2>&1 |
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# fi |
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# echo ; cat tst_2+2_out.txt |
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# echo |
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# fi |
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#--reset special setting: |
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export OMP_NUM_THREADS=1 |
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done |
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