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#!/bin/bash |
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#SBATCH -J tst_pgiAdm |
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#SBATCH -p fdr |
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#SBATCH -t 6:00:00 |
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#SBATCH --mem-per-cpu 4000 |
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#SBATCH -N 1 |
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#SBATCH --tasks-per-node 6 |
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#SBATCH -e /home/jm_c/test_svante/output/tst_pgiAdm.stderr |
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#SBATCH -o /home/jm_c/test_svante/output/tst_pgiAdm.stdout |
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|
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# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/run_tst_pgiAdm.slurm,v 1.1 2017/01/13 22:40:45 jmc Exp $ |
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# $Name: $ |
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|
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if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi |
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if test -f /etc/profile.d/zz_modules.sh ; then . /etc/profile.d/zz_modules.sh ; fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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|
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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headNode='svante-login' |
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|
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dNam='svante' |
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HERE="$HOME/test_${dNam}" |
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OUTP="$HERE/output"; SavD="$HERE/send" |
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SEND="ssh $headNode $SavD/mpack" |
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TST_DISK="/net/fs09/d0/jm_c" |
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TST_DIR="$TST_DISK/test_${dNam}" |
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|
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cd $TST_DISK ; pwd |
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if test -d $TST_DIR ; then |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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else |
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echo "ERROR: missing directory \"$TST_DIR\"" |
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exit 1 |
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fi |
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|
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sfx='pgiAdm'; typ='-adm' |
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addExp='' |
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module add pgi/16.9 |
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module add openmpi |
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module add netcdf |
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OPTFILE="../tools/build_options/linux_amd64_pgf77" |
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#- needed for DIVA with MPI: |
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export MPI_INC_DIR="/home/software/pgi/16.9/linux86-64/2016/mpi/openmpi-1.10.2/include" |
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options="$typ -MPI 6" |
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#- need this to get "staf": |
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#export PATH="$PATH:$HOME/bin" |
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|
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#dAlt=`date +%d` ; dAlt=`expr $dAlt % 3` |
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#if [ $dAlt -eq 1 ] ; then options="$options -fast" |
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#else options="$options -devel" ; fi |
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|
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NSLOTS=$SLURM_NTASKS |
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THEDATE=`date` |
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echo '********************************************************************************' |
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echo 'Start job '$THEDATE |
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echo 'NSLOTS = '$NSLOTS |
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echo '======= NODELIST ===============================================================' |
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echo $SLURM_NODELIST |
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cat /etc/redhat-release |
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echo '======= env ====================================================================' |
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env | grep SLURM |
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echo '======= modules ================================================================' |
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module list 2>&1 |
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echo '================================================================================' |
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|
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gcmDIR="MITgcm_$sfx" |
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cd $TST_DIR |
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|
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#- check for disk space: relative space (99%) or absolute (10.G): |
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dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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if [ $dsp -gt 99 ] ; then |
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#dsp=`df -P . | tail -1 | awk '{print $4}'` |
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#if [ $dsp -le 100000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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|
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#- change dir to $gcmDIR/verification dir: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
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else |
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echo "no dir: $gcmDIR/verification => exit" |
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exit |
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fi |
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|
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#- get option -devel/-fast from head-node testreport output: |
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options="$options -q" |
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prevName=`grep '^on :' tr_out.txt | awk '{print $4}'` |
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if test "x$prevName" = "x$headNode" ; then |
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dev_Opt=`grep '^run:' tr_out.txt | grep -c ' -devel'` |
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fastOpt=`grep '^run:' tr_out.txt | grep -c ' -fast'` |
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if test $dev_Opt = 1 -a $fastOpt = 0 ; then |
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options="$options -devel" |
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fi |
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if test $dev_Opt = 0 -a $fastOpt = 1 ; then |
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options="$options -fast" |
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fi |
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else |
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echo " missing previous testreport output "tr_out.txt" from $headNode" |
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echo ' skip addition of -devel/-fast to $options' |
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fi |
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|
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echo '' |
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echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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|
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#echo '' |
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#echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \ |
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# -send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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#../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \ |
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# -send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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