test_scripts/svante/run_tst_ifc.pbs

#!/bin/bash
#
#PBS -q short
#PBS -N run_tst_ifc
#PBS -l nodes=1:ppn=6:sandy
#PBS -e /home/jm_c/test_svante/output/run_tst_ifc.stderr
#PBS -o /home/jm_c/test_svante/output/run_tst_ifc.stdout
##PBS  -j oe

# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/run_tst_ifc.pbs,v 1.6 2017/01/13 22:41:26 jmc Exp $

if test -f /etc/profile.d/modules.sh ; then
    . /etc/profile.d/modules.sh
fi
# Note: added "limit stacksize unlimited" in file "~/.tcshrc"
# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI

umask 0022
#- to get case insensitive "ls" (and order of tested experiments)
export LC_ALL="en_US.UTF-8"
echo " running on: "`hostname`
headNode='svante'

dNam='svante'
HERE="$HOME/test_${dNam}"
OUTP="$HERE/output"; SavD="$HERE/send"
SEND="ssh $headNode $SavD/mpack"
TST_DISK="/net/fs09/d0/jm_c"
TST_DIR="$TST_DISK/test_${dNam}"

cd $TST_DISK ; pwd
if test -d $TST_DIR ; then
  echo "start from TST_DIR='$TST_DIR' at: "`date`
else
  echo "ERROR: missing directory \"$TST_DIR\""
  exit 1
fi

sfx='ifc'

module add intel
module add mvapich2
OPTFILE="../tools/build_options/linux_amd64_ifort11"
options="-MPI 6"
#options="$options -t hs94.cs-32x32x5"
#EXE="mpirun -v -all-local -np TR_NPROC ./mitgcmuv"

#dInWeek=`date +%a`
#if test "x$dInWeek" = xSun ; then options="$options -fast"
#                            #else options="$options -devel" ; fi
#fi

#- need this to get "staf":
#export PATH="$PATH:$HOME/bin"

gcmDIR="MITgcm_$sfx"
cd $TST_DIR

#- change dir to $gcmDIR/verification dir:
if test -e $gcmDIR/verification ; then
  echo " dir $gcmDIR/verification exist"
  cd $gcmDIR/verification
else
  echo "no dir: $gcmDIR/verification => exit"
  exit
fi

#- get option -devel/-fast from head-node testreport output:
options="$options -ro"
prevName=`grep '^on :' tr_out.txt | awk '{print $4}'`
if test "x$prevName" = "x$headNode" ; then
  dev_Opt=`grep '^run:' tr_out.txt | grep -c ' -devel'`
  fastOpt=`grep '^run:' tr_out.txt | grep -c ' -fast'`
  if test $dev_Opt = 1 -a $fastOpt = 0 ; then
    options="$options -devel"
  fi
  if test $dev_Opt = 0 -a $fastOpt = 1 ; then
    options="$options -fast"
  fi
else
  echo " missing previous testreport output "tr_out.txt" from $headNode"
  echo ' skip addition of -devel/-fast to $options'
fi

 echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -send \"$SEND\" -sd $SavD -a jmc@mitgcm.org
 ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -send "$SEND" -sd $SavD -a jmc@mitgcm.org


 echo ''
#echo ../tools/do_tst_2+2 -mpi -exe \"$EXE\" -o ${dNam}-$sfx \
#../tools/do_tst_2+2 -mpi -exe "$EXE" -o ${dNam}-$sfx \
 echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -send \"$SEND\" -sd $SavD -a jmc@mitgcm.org
 ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -send "$SEND" -sd $SavD -a jmc@mitgcm.org

exit
1	jmc	1.1	#!/bin/bash
2			#
3			#PBS -q short
4			#PBS -N run_tst_ifc
5	jmc	1.3	#PBS -l nodes=1:ppn=6:sandy
6	jmc	1.1	#PBS -e /home/jm_c/test_svante/output/run_tst_ifc.stderr
7			#PBS -o /home/jm_c/test_svante/output/run_tst_ifc.stdout
8			##PBS -j oe
9
10	jmc	1.7	# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/svante/run_tst_ifc.pbs,v 1.6 2017/01/13 22:41:26 jmc Exp $
11	jmc	1.1
12			if test -f /etc/profile.d/modules.sh ; then
13			. /etc/profile.d/modules.sh
14			fi
15			# Note: added "limit stacksize unlimited" in file "~/.tcshrc"
16			# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI
17
18			umask 0022
19			#- to get case insensitive "ls" (and order of tested experiments)
20			export LC_ALL="en_US.UTF-8"
21			echo " running on: "`hostname`
22	jmc	1.6	headNode='svante'
23	jmc	1.1
24			dNam='svante'
25	jmc	1.5	HERE="$HOME/test_${dNam}"
26	jmc	1.1	OUTP="$HERE/output"; SavD="$HERE/send"
27	jmc	1.6	SEND="ssh $headNode $SavD/mpack"
28	jmc	1.5	TST_DISK="/net/fs09/d0/jm_c"
29			TST_DIR="$TST_DISK/test_${dNam}"
30	jmc	1.1
31	jmc	1.5	cd $TST_DISK ; pwd
32	jmc	1.1	if test -d $TST_DIR ; then
33			echo "start from TST_DIR='$TST_DIR' at: "`date`
34			else
35			echo "ERROR: missing directory \"$TST_DIR\""
36			exit 1
37			fi
38
39			sfx='ifc'
40
41			module add intel
42			module add mvapich2
43			OPTFILE="../tools/build_options/linux_amd64_ifort11"
44	jmc	1.6	options="-MPI 6"
45	jmc	1.1	#options="$options -t hs94.cs-32x32x5"
46			#EXE="mpirun -v -all-local -np TR_NPROC ./mitgcmuv"
47
48	jmc	1.6	#dInWeek=`date +%a`
49			#if test "x$dInWeek" = xSun ; then options="$options -fast"
50			# #else options="$options -devel" ; fi
51			#fi
52	jmc	1.1
53			#- need this to get "staf":
54			#export PATH="$PATH:$HOME/bin"
55
56			gcmDIR="MITgcm_$sfx"
57			cd $TST_DIR
58
59			#- change dir to $gcmDIR/verification dir:
60			if test -e $gcmDIR/verification ; then
61	jmc	1.4	echo " dir $gcmDIR/verification exist"
62	jmc	1.1	cd $gcmDIR/verification
63			else
64			echo "no dir: $gcmDIR/verification => exit"
65			exit
66			fi
67
68	jmc	1.6	#- get option -devel/-fast from head-node testreport output:
69			options="$options -ro"
70			prevName=`grep '^on :' tr_out.txt \| awk '{print $4}'`
71			if test "x$prevName" = "x$headNode" ; then
72			dev_Opt=`grep '^run:' tr_out.txt \| grep -c ' -devel'`
73			fastOpt=`grep '^run:' tr_out.txt \| grep -c ' -fast'`
74			if test $dev_Opt = 1 -a $fastOpt = 0 ; then
75			options="$options -devel"
76			fi
77			if test $dev_Opt = 0 -a $fastOpt = 1 ; then
78			options="$options -fast"
79			fi
80			else
81			echo " missing previous testreport output "tr_out.txt" from $headNode"
82			echo ' skip addition of -devel/-fast to $options'
83			fi
84
85	jmc	1.1	echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
86			-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org
87			./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
88			-send "$SEND" -sd $SavD -a jmc@mitgcm.org
89
90
91			echo ''
92			#echo ../tools/do_tst_2+2 -mpi -exe \"$EXE\" -o ${dNam}-$sfx \
93			#../tools/do_tst_2+2 -mpi -exe "$EXE" -o ${dNam}-$sfx \
94			echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
95			-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org
96			../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
97			-send "$SEND" -sd $SavD -a jmc@mitgcm.org
98
99			exit