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revision 1.2 by jmc, Sat Feb 24 17:34:43 2018 UTC revision 1.17 by jmc, Sun Dec 6 15:43:14 2020 UTC
# Line 18  export LC_ALL="en_US.UTF-8" Line 18  export LC_ALL="en_US.UTF-8"
18  #  Turn off stack limit for FIZHI & AD-tests  #  Turn off stack limit for FIZHI & AD-tests
19  ulimit -s unlimited  ulimit -s unlimited
20  #  MPI test (for now, only with gfortran)  #  MPI test (for now, only with gfortran)
21    source $HOME/bin/openmpi.sh  # source $HOME/bin/openmpi.sh
22    
23  #- method to acces CVS:  #- method to access CVS:
24  # cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'    cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
25  # cmdCVS='cvs -d /u/gcmpack'  # cmdCVS='cvs -d /u/gcmpack'
26    export CVS_RSH=ssh  # export CVS_RSH=ssh
27    cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'  # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
28    
29  #- and which GitHub repository to use:  #- which GitHub repository to use and how to access it:
30    git_repo='MITgcm';  git_code='MITgcm'    git_repo='MITgcm';  git_code='MITgcm' ; git_other='verification_other'
31   #git_repo='altMITgcm'; #git_code='MITgcm66h'   #git_repo='altMITgcm'; #git_code='MITgcm66h'
32    #--
33      git_repo="https://github.com/$git_repo"
34     #git_repo="git://github.com/$git_repo"
35     #git_repo="git@github.com:$git_repo"
36    
37    #-------------------------------------------------------------------
38  # checkOut=3 : clone from GitHub and make a new copy (if sepDir)  # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
39  #   =2 : update (git pull) repo  and make a new copy code  (switch to 2 if no repo)  #   =2 : update (git pull) repo  and make a new copy code  (switch to 3 if no repo)
40  #   =1 : skip update             but use a new copy  (if sepDir)  #   =1 : skip update             but use a new copy  (if sepDir)
41  #   =0 : use existing test code ( switch to 1 if missing test code )  #   =0 : use existing test code ( switch to 1 if missing test code )
42  dInWeek=`date +%a`  dInWeek=`date +%a`
43    
44  dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`  dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
45   TESTDIR="$HOME/test_${dNam}"   TESTDIR="$HOME/test_${dNam}"
  outDir=$dNam  
  MC=11  
46  #TESTDIR="/scratch/jmc/test_${dNam}"  #TESTDIR="/scratch/jmc/test_${dNam}"
47  #outDir="${dNam}-${tst_grp}"   MC=13 ; outDir="${dNam}-${tst_grp}"
48  #MC=13  #MC=11 ;#outDir=$dNam
49  sepDir=1  sepDir=1
50  option=  option=
51    
52  if test $tst_grp = 'a' ; then  if test $tst_grp = 'a' ; then
53   checkOut=2   checkOut=2
54  #tst_list='g7a mpa mth mp2+rs mpi oad'   tst_list='mpa mpi mp2+rs mth'
  tst_list='mpa adm mpi gfo+rs mth+rs'  
  tst_list="$tst_list oad"  
55  else  else
56   checkOut=1   checkOut=1
57   tst_list='adm g77 gfo+rs ifc'   tst_list='adm tlm gfo+rs'
58   if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi  #tst_list="$tst_list oad"
59    #if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
60  fi  fi
61  echo " test: $outDir ; list='$tst_list'"  echo " test: $outDir ; list='$tst_list'"
62    
# Line 92  if [ $checkOut -ge 2 ] ; then Line 94  if [ $checkOut -ge 2 ] ; then
94    
95    #---- Making a new clone or updating existing one:    #---- Making a new clone or updating existing one:
96    if [ $checkOut -eq 2 ] ; then    if [ $checkOut -eq 2 ] ; then
97      if test -e MITgcm/.git/config ; then      if test -e $git_code/.git/config ; then
98         echo MITgcm/.git/config 'exist'         echo $git_code/.git/config 'exist'
99      else      else
100         echo -n MITgcm/.git/config 'missing ; '         echo -n $git_code/.git/config 'missing ; '
101           checkOut=3
102           echo "will get new clone ( checkOut=$checkOut )"
103        fi
104        if test -e $git_other/.git/config ; then
105           echo $git_other/.git/config 'exist'
106        else
107           echo -n $git_other/.git/config 'missing ; '
108         checkOut=3         checkOut=3
109         echo "will get new clone ( checkOut=$checkOut )"         echo "will get new clone ( checkOut=$checkOut )"
110      fi      fi
111    fi    fi
112    if [ $checkOut -eq 3 ] ; then    if [ $checkOut -eq 3 ] ; then
113      test -e $git_code && rm -rf $git_code      test -e $git_code && rm -rf $git_code
114      echo -n "Make a clone of $git_code from repo: $git_repo ..."      echo "Make a clone of $git_code from repo: $git_repo ..."
115      git clone https://github.com/$git_repo/${git_code}.git 2> $tmpFil      git clone $git_repo/${git_code}.git 2> $tmpFil
116        retVal=$?
117        if test $retVal = 0 ; then
118           echo ' --> done!'
119           rm -f $tmpFil
120        else
121           echo " Error: 'git clone' returned: $retVal"
122           cat $tmpFil
123           rm -f $tmpFil
124           exit 2
125        fi
126        test -e $git_other && rm -rf $git_other
127        echo "Make a clone of $git_other from repo: $git_repo ..."
128        git clone $git_repo/${git_other}.git 2> $tmpFil
129      retVal=$?      retVal=$?
130      if test $retVal = 0 ; then      if test $retVal = 0 ; then
131         echo ' --> done!'         echo ' --> done!'
# Line 124  if [ $checkOut -ge 2 ] ; then Line 146  if [ $checkOut -ge 2 ] ; then
146         echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"         echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
147         exit 3         exit 3
148      fi      fi
149        ( cd $git_code ; git checkout master -- . )
150        echo "Updating current clone ( $git_other ) ..."
151        ( cd $git_other ; git pull )
152        retVal=$?
153        if test $retVal = 0 ; then
154           echo ' --> done!'
155        else
156           echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
157           exit 3
158        fi
159        ( cd $git_other ; git checkout master -- . )
160    fi    fi
   
161    #---- making a new working copy: MITgcm_today    #---- making a new working copy: MITgcm_today
   ( cd $git_code ; git checkout master )  
    # mkdir MITgcm_today  
    # cp -p -ra $git_code/* MITgcm_today  
162    rsync -a $git_code/ MITgcm_today --exclude '.git'    rsync -a $git_code/ MITgcm_today --exclude '.git'
163      if test $sepDir = 0 ; then
164        echo -n " make a local copy of $git_other in MITgcm_today ..."      | tee -a $tdir/output_$tt
165        ( cd MITgcm_today
166          rsync -a ../$git_other/ $git_other --exclude '.git' )
167        echo " done"                                | tee -a $tdir/output_$tt
168      fi
169    #---- updating "other_input" dir    #---- updating "other_input" dir
170    if test -d other_input ; then    if test -d other_input ; then
171      list_dirs=`(cd other_input ; ls 2> /dev/null )`      list_dirs=`(cd other_input ; ls 2> /dev/null )`
# Line 160  do Line 195  do
195    #- define list of additional experiences to test:    #- define list of additional experiences to test:
196    addExp=''    addExp=''
197    if test $typ = 'mpi' ; then    if test $typ = 'mpi' ; then
198      addExp="offline_cheapaml atm_gray"      addExp="offline_cheapaml atm_gray atm_strato"
199        addExp="$addExp global_oce_cs32"
200        addExp="$addExp global_oce_llc90"
201      fi
202      if test $typ = 'mpa' ; then
203        addExp="$addExp global_oce_cs32"
204    fi    fi
205    if test $typ = 'gfo' -o $typ = 'ifc' ; then    if test $typ = 'gfo' -o $typ = 'ifc' ; then
     addExp="$addExp global_oce_biogeo_bling"  
206      addExp="$addExp shelfice_remeshing"      addExp="$addExp shelfice_remeshing"
207    fi    fi
208    if test $typ = 'mpi' ; then    if test $typ = 'gfo' ; then
209      addExp="$addExp global_ocean.gm_k3d"      addExp="$addExp global_ocean.gm_k3d"
210      addExp="$addExp global_oce_cs32"      addExp="$addExp global_ocean.gm_res"
211    fi    fi
212    #- check day and time:    #- check day and time:
213    curDay=`date +%d` ; curHour=`date +%H`    curDay=`date +%d` ; curHour=`date +%H`
# Line 197  do Line 236  do
236    if test $sepDir = 1 ; then    if test $sepDir = 1 ; then
237      new_dir="MITgcm_$typ"      new_dir="MITgcm_$typ"
238      reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi      reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
239      if test -d $new_dir/CVS -a $reUse = 1 ; then      if test -d $new_dir/doc -a $reUse = 1 ; then
240        cd $tdir/$new_dir        cd $tdir/$new_dir
241        if test $tt != $typ ; then        if test $tt != $typ ; then
242          ( cd verification ; ../tools/do_tst_2+2 -clean )          ( cd verification ; ../tools/do_tst_2+2 -clean )
# Line 256  do Line 295  do
295          echo " missing dir verification --> end test $tt"       | tee -a $tdir/output_$tt          echo " missing dir verification --> end test $tt"       | tee -a $tdir/output_$tt
296          continue          continue
297        fi        fi
298        #-- download additional experience from Contrib:        if test "x$addExp" != x ; then
299            echo -n " make a local copy of $git_other ..."  | tee -a $tdir/output_$tt
300            rsync -a $tdir/$git_other/ $git_other --exclude '.git'
301            echo " done"                            | tee -a $tdir/output_$tt
302          fi
303          #-- add additional experience from $git_other
304        for exp2add in $addExp ; do        for exp2add in $addExp ; do
305          echo " add dir: $exp2add (from Contrib:verification_other)"     | tee -a $tdir/output_$tt          echo "  add link: $exp2add (from $git_other )"  | tee -a $tdir/output_$tt
306          ( cd verification ;  $cmdCVS co -P -d $exp2add \          ( cd verification ;  ln -s ../$git_other/$exp2add . )
              MITgcm_contrib/verification_other/$exp2add > /dev/null )  
307          if test $exp2add = 'global_oce_cs32' ; then          if test $exp2add = 'global_oce_cs32' ; then
308            echo " link dir 'other_input/core2_cnyf' in here"             | tee -a $tdir/output_$tt            echo "      link dir 'other_input/core2_cnyf' in here"        | tee -a $tdir/output_$tt
309            ( cd verification/${exp2add}            ( cd ${git_other}/${exp2add}
310              ln -s ../../../other_input/core2_cnyf . )              ln -s ../../../other_input/core2_cnyf . )
311          fi          fi
312          if test $exp2add = 'shelfice_remeshing' ; then          if test $exp2add = 'global_oce_llc90' ; then
313            echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt            echo "      link dir 'other_input/gael_oce_llc90_input' to 'input_fields'" \
314            ( cd verification/${exp2add}                                                                          | tee -a $tdir/output_$tt
315              ln -s ../../../other_input/remeshing_code extra_code )            ( cd ${git_other}/${exp2add}
316                test -L input_fields && /bin/rm -f input_fields
317                ln -s  ../../../other_input/gael_oce_llc90_input input_fields
318              echo "      link dirs: 'core2_cnyf' & 'global_oce_input_fields/*' in input_verifs" \
319                                                                            | tee -a $tdir/output_$tt
320                test ! -e input_verifs && mkdir input_verifs
321                ( cd input_verifs ; /bin/rm -f *
322                  ln -s ../../../../other_input/core2_cnyf .
323                  ln -s ../../../../other_input/global_oce_input_fields/* . )
324              )
325          fi          fi
326           #if test $exp2add = 'shelfice_remeshing' ; then
327           #  echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
328           #  ( cd ${git_other}/${exp2add}
329           #    ln -s ../../../other_input/remeshing_code extra_code )
330           #fi
331        done        done
332      fi      fi
333    else    else
# Line 298  do Line 355  do
355    MPI=0    MPI=0
356    case $typ in    case $typ in
357     'g77'|'g7a')         OPTFILE='../tools/build_options/linux_amd64_g77' ;;     'g77'|'g7a')         OPTFILE='../tools/build_options/linux_amd64_g77' ;;
358     'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel"     'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -devel"
359                            comm="$comm -match $MC"
360                          OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;                          OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
361     'ifc')               comm="$comm -devel"     'ifc')               comm="$comm -devel"
362                          OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;                          OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
363     'pgi')               OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;     'pgi')               OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
364     'mpa'|'mpi'|'mp2')   comm="$comm -match $MC -devel" ; MPI=8     'mpa'|'mpi'|'mp2')   comm="$comm -devel"
365                            if test $typ = 'mp2' ; then MPI=3 ; else MPI=8 ; fi
366                            comm="$comm -match $MC"
367                          OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;                          OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
368         *)               OPTFILE= ;;         *)               OPTFILE= ;;
369    esac    esac
370  #-- set MPI command:  #-- set MPI command: Use default (Dec 2020) which is the same since testreport update on Sep 2013
   if test $MPI != 0 ; then  
     if test $typ = 'mp2' ; then MPI=3 ; fi  
     if test $typ = 'mpa' ; then  
       EXE="mpirun -np TR_NPROC ./mitgcmuv_ad"  
     else  
       EXE="mpirun -np TR_NPROC ./mitgcmuv"  
     fi  
   fi  
   
371  #-- set specific Env Vars:  #-- set specific Env Vars:
372    if test $typ = 'oad' ; then    if test $typ = 'oad' ; then
373      #- for some reasons, "source ScriptFile | tee -a LogFile"      #- for some reasons, "source ScriptFile | tee -a LogFile"
# Line 349  do Line 400  do
400    if test "x$OPTFILE" != x ; then    if test "x$OPTFILE" != x ; then
401      comm="$comm -of=$OPTFILE"      comm="$comm -of=$OPTFILE"
402    fi    fi
403    if test $MPI = 0 ; then  echo ''      | tee -a $tdir/output_$tt    echo ''                               | tee -a $tdir/output_$tt
404    else echo " (EXE='$EXE')"             | tee -a $tdir/output_$tt    if test $MPI != 0 ; then comm="$comm -MPI $MPI" ; fi
     comm="$comm -MPI $MPI -command \"\$EXE\""  
   fi  
405    if test "x$option" != x ; then comm="$comm $option" ; fi    if test "x$option" != x ; then comm="$comm $option" ; fi
406   #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi   #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
407    echo "  \"eval $comm\""               | tee -a $tdir/output_$tt    echo "  \"eval $comm\""               | tee -a $tdir/output_$tt
# Line 371  do Line 420  do
420        echo "======================"        echo "======================"
421        $comm >> $tdir/output_$tt 2>&1        $comm >> $tdir/output_$tt 2>&1
422      else      else
423        echo "  \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt        echo "  \"$comm -mpi\""           | tee -a $tdir/output_$tt
424        echo "======================"        echo "======================"
425        $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1        $comm -mpi >> $tdir/output_$tt 2>&1
426      fi      fi
427      echo ; cat tst_2+2_out.txt      echo ; cat tst_2+2_out.txt
428      echo      echo
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