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Revision 1.9 - (hide annotations) (download)
Wed Sep 18 16:01:22 2019 UTC (5 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.8: +4 -6 lines
no need for specific MPI env setting for openmpi with gfortran
 since std optfile is taking care of MPI_INC_DIR setting

1 jmc 1.1 #! /usr/bin/env bash
2    
3 jmc 1.9 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_villon,v 1.8 2019/09/17 22:43:23 jmc Exp $
4 jmc 1.1
5     # Test script for MITgcm that should work on most of the x86_64 Linux machines.
6    
7     tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi
8     if test $tst_grp != 'a' -a $tst_grp != 'b' ; then
9     echo "missing or invalid argument (expect: 'a' or 'b') ==> exit"
10     exit 1
11     fi
12    
13     #- defaults
14     #export PATH="$PATH:/usr/local/bin"
15     if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
16     #- to get case insensitive "ls" (and order of tested experiments)
17     export LC_ALL="en_US.UTF-8"
18     # Turn off stack limit for FIZHI & AD-tests
19     ulimit -s unlimited
20     # MPI test (for now, only with gfortran)
21 jmc 1.9 # source $HOME/bin/openmpi.sh
22 jmc 1.1
23 jmc 1.3 #- method to access CVS:
24 jmc 1.7 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
25 jmc 1.1 # cmdCVS='cvs -d /u/gcmpack'
26 jmc 1.7 # export CVS_RSH=ssh
27     # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
28 jmc 1.1
29 jmc 1.3 #- which GitHub repository to use and how to access it:
30 jmc 1.5 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
31 jmc 1.1 #git_repo='altMITgcm'; #git_code='MITgcm66h'
32 jmc 1.3 #--
33     git_repo="https://github.com/$git_repo"
34     #git_repo="git://github.com/$git_repo"
35     #git_repo="git@github.com:$git_repo"
36    
37 jmc 1.7 #-------------------------------------------------------------------
38 jmc 1.1 # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
39 jmc 1.7 # =2 : update (git pull) repo and make a new copy code (switch to 3 if no repo)
40 jmc 1.1 # =1 : skip update but use a new copy (if sepDir)
41     # =0 : use existing test code ( switch to 1 if missing test code )
42     dInWeek=`date +%a`
43    
44     dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
45     TESTDIR="$HOME/test_${dNam}"
46     #TESTDIR="/scratch/jmc/test_${dNam}"
47 jmc 1.9 MC=13 ; outDir="${dNam}-${tst_grp}"
48     MC=11 ;#outDir=$dNam
49 jmc 1.1 sepDir=1
50     option=
51    
52     if test $tst_grp = 'a' ; then
53     checkOut=2
54 jmc 1.8 tst_list='mpa mpi mp2+rs mth'
55 jmc 1.1 else
56     checkOut=1
57 jmc 1.8 tst_list='adm gfo+rs'
58     #tst_list="$tst_list oad"
59 jmc 1.1 if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
60     fi
61     echo " test: $outDir ; list='$tst_list'"
62    
63     #option="-nc" ; checkOut=0
64     #option="-q" ; checkOut=0
65    
66     TODAY=`date +%d`
67     tmpFil="/tmp/"`basename $0`".$$"
68     tdir=$TESTDIR
69     updFile='updated_code' ; today=`date +%Y%m%d`
70    
71     if [ $checkOut -le 1 ] ; then
72     if test -e $tdir/MITgcm_today/doc ; then
73     echo $tdir/MITgcm_today/doc 'exist'
74     else
75     echo -n $tdir/MITgcm_today 'missing ; '
76     checkOut=2
77     echo "will make a new copy ( checkOut=$checkOut )"
78     fi
79     fi
80    
81     if [ $checkOut -ge 2 ] ; then
82     #---- cleaning:
83     if test -e $tdir ; then
84     #- remove date/lock-file:
85     if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi
86     echo -n "Removing working copy: $tdir/MITgcm_today ..."
87     test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today
88     else
89     echo -n "Creating a working dir: $tdir ..."
90     mkdir $tdir
91     fi
92     echo " done"
93     cd $tdir
94    
95     #---- Making a new clone or updating existing one:
96 jmc 1.2 if [ $checkOut -eq 2 ] ; then
97 jmc 1.5 if test -e $git_code/.git/config ; then
98     echo $git_code/.git/config 'exist'
99 jmc 1.2 else
100 jmc 1.5 echo -n $git_code/.git/config 'missing ; '
101     checkOut=3
102     echo "will get new clone ( checkOut=$checkOut )"
103     fi
104     if test -e $git_other/.git/config ; then
105     echo $git_other/.git/config 'exist'
106     else
107     echo -n $git_other/.git/config 'missing ; '
108 jmc 1.2 checkOut=3
109     echo "will get new clone ( checkOut=$checkOut )"
110     fi
111 jmc 1.1 fi
112     if [ $checkOut -eq 3 ] ; then
113 jmc 1.2 test -e $git_code && rm -rf $git_code
114 jmc 1.5 echo "Make a clone of $git_code from repo: $git_repo ..."
115 jmc 1.3 git clone $git_repo/${git_code}.git 2> $tmpFil
116 jmc 1.1 retVal=$?
117     if test $retVal = 0 ; then
118     echo ' --> done!'
119     rm -f $tmpFil
120     else
121     echo " Error: 'git clone' returned: $retVal"
122     cat $tmpFil
123     rm -f $tmpFil
124     exit 2
125     fi
126 jmc 1.5 test -e $git_other && rm -rf $git_other
127     echo "Make a clone of $git_other from repo: $git_repo ..."
128     git clone $git_repo/${git_other}.git 2> $tmpFil
129     retVal=$?
130     if test $retVal = 0 ; then
131     echo ' --> done!'
132     rm -f $tmpFil
133     else
134     echo " Error: 'git clone' returned: $retVal"
135     cat $tmpFil
136     rm -f $tmpFil
137     exit 2
138     fi
139 jmc 1.1 else
140     echo "Updating current clone ( $git_code ) ..."
141     ( cd $git_code ; git pull )
142 jmc 1.2 retVal=$?
143     if test $retVal = 0 ; then
144     echo ' --> done!'
145     else
146     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
147     exit 3
148     fi
149 jmc 1.6 ( cd $git_code ; git checkout master -- . )
150 jmc 1.5 echo "Updating current clone ( $git_other ) ..."
151     ( cd $git_other ; git pull )
152     retVal=$?
153     if test $retVal = 0 ; then
154     echo ' --> done!'
155     else
156     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
157     exit 3
158     fi
159 jmc 1.6 ( cd $git_other ; git checkout master -- . )
160 jmc 1.1 fi
161     #---- making a new working copy: MITgcm_today
162     rsync -a $git_code/ MITgcm_today --exclude '.git'
163 jmc 1.5 if test $sepDir = 0 ; then
164     echo -n " make a local copy of $git_other in MITgcm_today ..." | tee -a $tdir/output_$tt
165     ( cd MITgcm_today
166     rsync -a ../$git_other/ $git_other --exclude '.git' )
167     echo " done" | tee -a $tdir/output_$tt
168     fi
169 jmc 1.1 #---- updating "other_input" dir
170     if test -d other_input ; then
171     list_dirs=`(cd other_input ; ls 2> /dev/null )`
172     echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:"
173     for exd in $list_dirs ; do
174     if test -d other_input/$exd/CVS ; then echo " $exd"
175     ( cd other_input/$exd ; $cmdCVS update -P -d )
176     fi
177     done
178     echo " <-- update of 'other_input' dirs done"
179     fi
180     #---- update date/lock-file:
181     echo $today > $updFile ; sleep 2 ; ls -l $updFile
182     else
183     cd $tdir
184     fi
185    
186     #------------------------------------------------------------------------
187    
188     firstTst=`echo $tst_list | awk '{print $1}'`
189     last_Tst=`echo $tst_list | awk '{print $NF}'`
190     for tt in $tst_list
191     do
192    
193     echo "================================================================"
194     typ=`echo $tt | sed 's/+rs//'`
195     #- define list of additional experiences to test:
196     addExp=''
197     if test $typ = 'mpi' ; then
198 jmc 1.7 addExp="offline_cheapaml atm_gray atm_strato"
199     fi
200 jmc 1.8 if test $typ = 'gfo' -o $typ = 'ifc' -o $typ = 'adm' ; then
201 jmc 1.7 addExp="$addExp global_oce_biogeo_bling"
202 jmc 1.1 fi
203     if test $typ = 'gfo' -o $typ = 'ifc' ; then
204     addExp="$addExp shelfice_remeshing"
205     fi
206     if test $typ = 'mpi' ; then
207     addExp="$addExp global_ocean.gm_k3d"
208     addExp="$addExp global_oce_cs32"
209 jmc 1.8 addExp="$addExp global_oce_llc90"
210 jmc 1.1 fi
211     #- check day and time:
212     curDay=`date +%d` ; curHour=`date +%H`
213     if [ $curDay -ne $TODAY ] ; then
214     date ; echo "day is over => skip test $typ"
215     continue
216     fi
217     if [ $curHour -ge 18 ] ; then
218     date ; echo "too late to run test $typ"
219     continue
220     fi
221     if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then
222     echo "using option='$option' prevent multi-tests => skip test $typ"
223     continue
224     fi
225     #- clean-up old output files
226     if test -d $tdir/prev ; then
227     mv -f $tdir/output_${typ}* $tdir/prev
228     else
229     rm -f $tdir/output_${typ}*
230     fi
231     touch $tdir/output_$tt
232     echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt
233     date >> $tdir/output_$tt
234     echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt
235     if test $sepDir = 1 ; then
236     new_dir="MITgcm_$typ"
237     reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
238 jmc 1.7 if test -d $new_dir/doc -a $reUse = 1 ; then
239 jmc 1.1 cd $tdir/$new_dir
240     if test $tt != $typ ; then
241     ( cd verification ; ../tools/do_tst_2+2 -clean )
242     fi
243     else
244     if test -d prev ; then
245     #-- save previous summary:
246     oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1`
247     if test "x$oldS" != x ; then
248     cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ
249     touch -r $oldS prev/tr_out.$typ
250     fi
251     if test $tt != $typ ; then
252     oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1`
253     if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi
254     fi
255     fi
256     echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt
257     test -e $new_dir && rm -rf $new_dir
258     mkdir $new_dir
259     #- before making a copy, check that code has been updated
260     nCount=0; today=`date +%Y%m%d`
261     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
262     while [ $today -gt $updDate ] ; do
263     nCount=`expr $nCount + 1`
264     if [ $nCount -gt 40 ] ; then
265     echo " waiting too long (nCount=$nCount) for updated code"
266     echo " today=$today , updDate=$updDate "
267     ls -l $updFile
268     exit
269     fi
270     sleep 60
271     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
272     done
273     ls -l $updFile | tee -a $tdir/output_$tt
274     echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt
275     #-----------------------------
276     if test -d MITgcm_today -a -d $new_dir ; then
277     echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt
278     cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt
279     else
280     if test -d MITgcm_today ; then
281     echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt
282     else
283     echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt
284     fi
285     continue
286     fi
287     echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt
288     cd $tdir/$new_dir
289     retVal=$?
290     ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt
291     if test -d verification ; then
292     echo " check: dir verification exist" | tee -a $tdir/output_$tt
293     else
294     echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt
295     continue
296     fi
297 jmc 1.5 if test "x$addExp" != x ; then
298     echo -n " make a local copy of $git_other ..." | tee -a $tdir/output_$tt
299     rsync -a $tdir/$git_other/ $git_other --exclude '.git'
300     echo " done" | tee -a $tdir/output_$tt
301     fi
302     #-- add additional experience from $git_other
303 jmc 1.1 for exp2add in $addExp ; do
304 jmc 1.5 echo " add link: $exp2add (from $git_other )" | tee -a $tdir/output_$tt
305     ( cd verification ; ln -s ../$git_other/$exp2add . )
306 jmc 1.1 if test $exp2add = 'global_oce_cs32' ; then
307 jmc 1.5 echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt
308 jmc 1.1 ( cd verification/${exp2add}
309     ln -s ../../../other_input/core2_cnyf . )
310     fi
311 jmc 1.4 #if test $exp2add = 'shelfice_remeshing' ; then
312     # echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
313     # ( cd verification/${exp2add}
314     # ln -s ../../../other_input/remeshing_code extra_code )
315     #fi
316 jmc 1.1 done
317     fi
318     else
319     cd $tdir/MITgcm_today
320     fi
321     cd verification
322    
323     #-- set the testreport command:
324     comm="./testreport"
325     if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then
326     comm="$comm -adm"
327     elif test $typ = 'oad' ; then
328     comm="$comm -oad"
329     elif test $typ = 'tlm' ; then
330     comm="$comm -tlm"
331     elif test $typ = 'mth' -o $typ = 'mp2' ; then
332     export GOMP_STACKSIZE=400m
333     export OMP_NUM_THREADS=2
334     comm="$comm -mth"
335     else
336     comm="$comm -md cyrus-makedepend"
337     fi
338     comm="$comm -odir $outDir -a jm_c@mitgcm.org"
339     #-- set the optfile (+ mpi & match-precision)
340     MPI=0
341     case $typ in
342     'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;;
343     'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel"
344     OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
345     'ifc') comm="$comm -devel"
346     OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
347     'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
348     'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=8
349     OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
350     *) OPTFILE= ;;
351     esac
352     #-- set MPI command:
353     if test $MPI != 0 ; then
354     if test $typ = 'mp2' ; then MPI=3 ; fi
355     if test $typ = 'mpa' ; then
356     EXE="mpirun -np TR_NPROC ./mitgcmuv_ad"
357     else
358     EXE="mpirun -np TR_NPROC ./mitgcmuv"
359     fi
360     fi
361    
362     #-- set specific Env Vars:
363     if test $typ = 'oad' ; then
364     #- for some reasons, "source ScriptFile | tee -a LogFile"
365     # does run the script but does not keep the env-var settings
366     source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt
367     fi
368     if test $typ = 'ifc' ; then
369     source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64
370     fi
371     if test $typ = 'pgi' ; then
372     #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20'
373     export PGI=/srv/software/pgi/pgi-10.9
374     export PATH="$PATH:$PGI/linux86-64/10.9/bin"
375     export LM_LICENSE_FILE=$PGI/license.dat
376     fi
377    
378     if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then
379     #-- cleaning:
380     echo "======================"
381     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
382     cmdCLN="./testreport -clean"
383     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
384     $cmdCLN >> $tdir/output_$tt 2>&1
385     echo "======================"
386     echo "" | tee -a $tdir/output_$tt
387     fi
388    
389     #-- run the testreport command:
390     echo -n "Running testreport using:" | tee -a $tdir/output_$tt
391     if test "x$OPTFILE" != x ; then
392     comm="$comm -of=$OPTFILE"
393     fi
394     if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt
395     else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt
396     comm="$comm -MPI $MPI -command \"\$EXE\""
397     fi
398     if test "x$option" != x ; then comm="$comm $option" ; fi
399     #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
400     echo " \"eval $comm\"" | tee -a $tdir/output_$tt
401     echo "======================"
402     eval $comm >> $tdir/output_$tt 2>&1
403     sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt
404     echo "" | tee -a $tdir/output_$tt
405    
406     #-- also test restart (test 2+2=4)
407     if test $tt != $typ
408     then
409     echo "testing restart using:" | tee -a $tdir/output_$tt
410     comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org"
411     if test $MPI = 0 ; then
412     echo " \"$comm\"" | tee -a $tdir/output_$tt
413     echo "======================"
414     $comm >> $tdir/output_$tt 2>&1
415     else
416     echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt
417     echo "======================"
418     $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1
419     fi
420     echo ; cat tst_2+2_out.txt
421     echo
422     fi
423     export OMP_NUM_THREADS=1
424    
425     if test $sepDir = 0 ; then
426     #-- cleaning:
427     echo "======================"
428     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
429     if test $tt != $typ ; then
430     cmdCLN="../tools/do_tst_2+2 -clean"
431     echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt
432     $cmdCLN >> $tdir/output_$tt 2>&1
433     fi
434     if test $tt != $last_Tst ; then
435     cmdCLN="./testreport -clean"
436     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
437     $cmdCLN >> $tdir/output_$tt 2>&1
438     fi
439     echo "======================"
440     echo
441     fi
442     cd $tdir
443    
444     done

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