/[MITgcm]/MITgcm_contrib/test_scripts/ref_machine/test_villon
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Revision 1.17 - (hide annotations) (download)
Sun Dec 6 15:43:14 2020 UTC (4 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: HEAD
Changes since 1.16: +11 -18 lines
Use default testreport run command (which has the the same as used here
since testreport update on Sep 2013).

1 jmc 1.1 #! /usr/bin/env bash
2    
3 jmc 1.17 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_villon,v 1.16 2019/12/23 18:57:47 jmc Exp $
4 jmc 1.1
5     # Test script for MITgcm that should work on most of the x86_64 Linux machines.
6    
7     tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi
8     if test $tst_grp != 'a' -a $tst_grp != 'b' ; then
9     echo "missing or invalid argument (expect: 'a' or 'b') ==> exit"
10     exit 1
11     fi
12    
13     #- defaults
14     #export PATH="$PATH:/usr/local/bin"
15     if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
16     #- to get case insensitive "ls" (and order of tested experiments)
17     export LC_ALL="en_US.UTF-8"
18     # Turn off stack limit for FIZHI & AD-tests
19     ulimit -s unlimited
20     # MPI test (for now, only with gfortran)
21 jmc 1.9 # source $HOME/bin/openmpi.sh
22 jmc 1.1
23 jmc 1.3 #- method to access CVS:
24 jmc 1.7 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
25 jmc 1.1 # cmdCVS='cvs -d /u/gcmpack'
26 jmc 1.7 # export CVS_RSH=ssh
27     # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
28 jmc 1.1
29 jmc 1.3 #- which GitHub repository to use and how to access it:
30 jmc 1.5 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
31 jmc 1.1 #git_repo='altMITgcm'; #git_code='MITgcm66h'
32 jmc 1.3 #--
33     git_repo="https://github.com/$git_repo"
34     #git_repo="git://github.com/$git_repo"
35     #git_repo="git@github.com:$git_repo"
36    
37 jmc 1.7 #-------------------------------------------------------------------
38 jmc 1.1 # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
39 jmc 1.7 # =2 : update (git pull) repo and make a new copy code (switch to 3 if no repo)
40 jmc 1.1 # =1 : skip update but use a new copy (if sepDir)
41     # =0 : use existing test code ( switch to 1 if missing test code )
42     dInWeek=`date +%a`
43    
44     dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
45     TESTDIR="$HOME/test_${dNam}"
46     #TESTDIR="/scratch/jmc/test_${dNam}"
47 jmc 1.9 MC=13 ; outDir="${dNam}-${tst_grp}"
48 jmc 1.12 #MC=11 ;#outDir=$dNam
49 jmc 1.1 sepDir=1
50     option=
51    
52     if test $tst_grp = 'a' ; then
53     checkOut=2
54 jmc 1.8 tst_list='mpa mpi mp2+rs mth'
55 jmc 1.1 else
56     checkOut=1
57 jmc 1.11 tst_list='adm tlm gfo+rs'
58 jmc 1.8 #tst_list="$tst_list oad"
59 jmc 1.11 #if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
60 jmc 1.1 fi
61     echo " test: $outDir ; list='$tst_list'"
62    
63     #option="-nc" ; checkOut=0
64     #option="-q" ; checkOut=0
65    
66     TODAY=`date +%d`
67     tmpFil="/tmp/"`basename $0`".$$"
68     tdir=$TESTDIR
69     updFile='updated_code' ; today=`date +%Y%m%d`
70    
71     if [ $checkOut -le 1 ] ; then
72     if test -e $tdir/MITgcm_today/doc ; then
73     echo $tdir/MITgcm_today/doc 'exist'
74     else
75     echo -n $tdir/MITgcm_today 'missing ; '
76     checkOut=2
77     echo "will make a new copy ( checkOut=$checkOut )"
78     fi
79     fi
80    
81     if [ $checkOut -ge 2 ] ; then
82     #---- cleaning:
83     if test -e $tdir ; then
84     #- remove date/lock-file:
85     if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi
86     echo -n "Removing working copy: $tdir/MITgcm_today ..."
87     test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today
88     else
89     echo -n "Creating a working dir: $tdir ..."
90     mkdir $tdir
91     fi
92     echo " done"
93     cd $tdir
94    
95     #---- Making a new clone or updating existing one:
96 jmc 1.2 if [ $checkOut -eq 2 ] ; then
97 jmc 1.5 if test -e $git_code/.git/config ; then
98     echo $git_code/.git/config 'exist'
99 jmc 1.2 else
100 jmc 1.5 echo -n $git_code/.git/config 'missing ; '
101     checkOut=3
102     echo "will get new clone ( checkOut=$checkOut )"
103     fi
104     if test -e $git_other/.git/config ; then
105     echo $git_other/.git/config 'exist'
106     else
107     echo -n $git_other/.git/config 'missing ; '
108 jmc 1.2 checkOut=3
109     echo "will get new clone ( checkOut=$checkOut )"
110     fi
111 jmc 1.1 fi
112     if [ $checkOut -eq 3 ] ; then
113 jmc 1.2 test -e $git_code && rm -rf $git_code
114 jmc 1.5 echo "Make a clone of $git_code from repo: $git_repo ..."
115 jmc 1.3 git clone $git_repo/${git_code}.git 2> $tmpFil
116 jmc 1.1 retVal=$?
117     if test $retVal = 0 ; then
118     echo ' --> done!'
119     rm -f $tmpFil
120     else
121     echo " Error: 'git clone' returned: $retVal"
122     cat $tmpFil
123     rm -f $tmpFil
124     exit 2
125     fi
126 jmc 1.5 test -e $git_other && rm -rf $git_other
127     echo "Make a clone of $git_other from repo: $git_repo ..."
128     git clone $git_repo/${git_other}.git 2> $tmpFil
129     retVal=$?
130     if test $retVal = 0 ; then
131     echo ' --> done!'
132     rm -f $tmpFil
133     else
134     echo " Error: 'git clone' returned: $retVal"
135     cat $tmpFil
136     rm -f $tmpFil
137     exit 2
138     fi
139 jmc 1.1 else
140     echo "Updating current clone ( $git_code ) ..."
141     ( cd $git_code ; git pull )
142 jmc 1.2 retVal=$?
143     if test $retVal = 0 ; then
144     echo ' --> done!'
145     else
146     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
147     exit 3
148     fi
149 jmc 1.6 ( cd $git_code ; git checkout master -- . )
150 jmc 1.5 echo "Updating current clone ( $git_other ) ..."
151     ( cd $git_other ; git pull )
152     retVal=$?
153     if test $retVal = 0 ; then
154     echo ' --> done!'
155     else
156     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
157     exit 3
158     fi
159 jmc 1.6 ( cd $git_other ; git checkout master -- . )
160 jmc 1.1 fi
161     #---- making a new working copy: MITgcm_today
162     rsync -a $git_code/ MITgcm_today --exclude '.git'
163 jmc 1.5 if test $sepDir = 0 ; then
164     echo -n " make a local copy of $git_other in MITgcm_today ..." | tee -a $tdir/output_$tt
165     ( cd MITgcm_today
166     rsync -a ../$git_other/ $git_other --exclude '.git' )
167     echo " done" | tee -a $tdir/output_$tt
168     fi
169 jmc 1.1 #---- updating "other_input" dir
170     if test -d other_input ; then
171     list_dirs=`(cd other_input ; ls 2> /dev/null )`
172     echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:"
173     for exd in $list_dirs ; do
174     if test -d other_input/$exd/CVS ; then echo " $exd"
175     ( cd other_input/$exd ; $cmdCVS update -P -d )
176     fi
177     done
178     echo " <-- update of 'other_input' dirs done"
179     fi
180     #---- update date/lock-file:
181     echo $today > $updFile ; sleep 2 ; ls -l $updFile
182     else
183     cd $tdir
184     fi
185    
186     #------------------------------------------------------------------------
187    
188     firstTst=`echo $tst_list | awk '{print $1}'`
189     last_Tst=`echo $tst_list | awk '{print $NF}'`
190     for tt in $tst_list
191     do
192    
193     echo "================================================================"
194     typ=`echo $tt | sed 's/+rs//'`
195     #- define list of additional experiences to test:
196     addExp=''
197     if test $typ = 'mpi' ; then
198 jmc 1.7 addExp="offline_cheapaml atm_gray atm_strato"
199 jmc 1.13 addExp="$addExp global_oce_cs32"
200     addExp="$addExp global_oce_llc90"
201 jmc 1.7 fi
202 jmc 1.17 if test $typ = 'mpa' ; then
203     addExp="$addExp global_oce_cs32"
204     fi
205 jmc 1.1 if test $typ = 'gfo' -o $typ = 'ifc' ; then
206     addExp="$addExp shelfice_remeshing"
207     fi
208 jmc 1.13 if test $typ = 'gfo' ; then
209 jmc 1.1 addExp="$addExp global_ocean.gm_k3d"
210 jmc 1.12 addExp="$addExp global_ocean.gm_res"
211 jmc 1.1 fi
212     #- check day and time:
213     curDay=`date +%d` ; curHour=`date +%H`
214     if [ $curDay -ne $TODAY ] ; then
215     date ; echo "day is over => skip test $typ"
216     continue
217     fi
218     if [ $curHour -ge 18 ] ; then
219     date ; echo "too late to run test $typ"
220     continue
221     fi
222     if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then
223     echo "using option='$option' prevent multi-tests => skip test $typ"
224     continue
225     fi
226     #- clean-up old output files
227     if test -d $tdir/prev ; then
228     mv -f $tdir/output_${typ}* $tdir/prev
229     else
230     rm -f $tdir/output_${typ}*
231     fi
232     touch $tdir/output_$tt
233     echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt
234     date >> $tdir/output_$tt
235     echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt
236     if test $sepDir = 1 ; then
237     new_dir="MITgcm_$typ"
238     reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
239 jmc 1.7 if test -d $new_dir/doc -a $reUse = 1 ; then
240 jmc 1.1 cd $tdir/$new_dir
241     if test $tt != $typ ; then
242     ( cd verification ; ../tools/do_tst_2+2 -clean )
243     fi
244     else
245     if test -d prev ; then
246     #-- save previous summary:
247     oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1`
248     if test "x$oldS" != x ; then
249     cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ
250     touch -r $oldS prev/tr_out.$typ
251     fi
252     if test $tt != $typ ; then
253     oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1`
254     if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi
255     fi
256     fi
257     echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt
258     test -e $new_dir && rm -rf $new_dir
259     mkdir $new_dir
260     #- before making a copy, check that code has been updated
261     nCount=0; today=`date +%Y%m%d`
262     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
263     while [ $today -gt $updDate ] ; do
264     nCount=`expr $nCount + 1`
265     if [ $nCount -gt 40 ] ; then
266     echo " waiting too long (nCount=$nCount) for updated code"
267     echo " today=$today , updDate=$updDate "
268     ls -l $updFile
269     exit
270     fi
271     sleep 60
272     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
273     done
274     ls -l $updFile | tee -a $tdir/output_$tt
275     echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt
276     #-----------------------------
277     if test -d MITgcm_today -a -d $new_dir ; then
278     echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt
279     cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt
280     else
281     if test -d MITgcm_today ; then
282     echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt
283     else
284     echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt
285     fi
286     continue
287     fi
288     echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt
289     cd $tdir/$new_dir
290     retVal=$?
291     ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt
292     if test -d verification ; then
293     echo " check: dir verification exist" | tee -a $tdir/output_$tt
294     else
295     echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt
296     continue
297     fi
298 jmc 1.5 if test "x$addExp" != x ; then
299     echo -n " make a local copy of $git_other ..." | tee -a $tdir/output_$tt
300     rsync -a $tdir/$git_other/ $git_other --exclude '.git'
301     echo " done" | tee -a $tdir/output_$tt
302     fi
303     #-- add additional experience from $git_other
304 jmc 1.1 for exp2add in $addExp ; do
305 jmc 1.5 echo " add link: $exp2add (from $git_other )" | tee -a $tdir/output_$tt
306     ( cd verification ; ln -s ../$git_other/$exp2add . )
307 jmc 1.1 if test $exp2add = 'global_oce_cs32' ; then
308 jmc 1.5 echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt
309 jmc 1.10 ( cd ${git_other}/${exp2add}
310 jmc 1.1 ln -s ../../../other_input/core2_cnyf . )
311     fi
312 jmc 1.10 if test $exp2add = 'global_oce_llc90' ; then
313     echo " link dir 'other_input/gael_oce_llc90_input' to 'input_fields'" \
314     | tee -a $tdir/output_$tt
315     ( cd ${git_other}/${exp2add}
316     test -L input_fields && /bin/rm -f input_fields
317     ln -s ../../../other_input/gael_oce_llc90_input input_fields
318     echo " link dirs: 'core2_cnyf' & 'global_oce_input_fields/*' in input_verifs" \
319     | tee -a $tdir/output_$tt
320     test ! -e input_verifs && mkdir input_verifs
321     ( cd input_verifs ; /bin/rm -f *
322     ln -s ../../../../other_input/core2_cnyf .
323     ln -s ../../../../other_input/global_oce_input_fields/* . )
324     )
325     fi
326 jmc 1.4 #if test $exp2add = 'shelfice_remeshing' ; then
327     # echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
328 jmc 1.10 # ( cd ${git_other}/${exp2add}
329 jmc 1.4 # ln -s ../../../other_input/remeshing_code extra_code )
330     #fi
331 jmc 1.1 done
332     fi
333     else
334     cd $tdir/MITgcm_today
335     fi
336     cd verification
337    
338     #-- set the testreport command:
339     comm="./testreport"
340     if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then
341     comm="$comm -adm"
342     elif test $typ = 'oad' ; then
343     comm="$comm -oad"
344     elif test $typ = 'tlm' ; then
345     comm="$comm -tlm"
346     elif test $typ = 'mth' -o $typ = 'mp2' ; then
347     export GOMP_STACKSIZE=400m
348     export OMP_NUM_THREADS=2
349     comm="$comm -mth"
350     else
351     comm="$comm -md cyrus-makedepend"
352     fi
353     comm="$comm -odir $outDir -a jm_c@mitgcm.org"
354     #-- set the optfile (+ mpi & match-precision)
355     MPI=0
356     case $typ in
357     'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;;
358 jmc 1.15 'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -devel"
359     comm="$comm -match $MC"
360 jmc 1.1 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
361     'ifc') comm="$comm -devel"
362     OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
363     'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
364 jmc 1.17 'mpa'|'mpi'|'mp2') comm="$comm -devel"
365     if test $typ = 'mp2' ; then MPI=3 ; else MPI=8 ; fi
366 jmc 1.16 comm="$comm -match $MC"
367 jmc 1.1 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
368     *) OPTFILE= ;;
369     esac
370 jmc 1.17 #-- set MPI command: Use default (Dec 2020) which is the same since testreport update on Sep 2013
371 jmc 1.1 #-- set specific Env Vars:
372     if test $typ = 'oad' ; then
373     #- for some reasons, "source ScriptFile | tee -a LogFile"
374     # does run the script but does not keep the env-var settings
375     source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt
376     fi
377     if test $typ = 'ifc' ; then
378     source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64
379     fi
380     if test $typ = 'pgi' ; then
381     #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20'
382     export PGI=/srv/software/pgi/pgi-10.9
383     export PATH="$PATH:$PGI/linux86-64/10.9/bin"
384     export LM_LICENSE_FILE=$PGI/license.dat
385     fi
386    
387     if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then
388     #-- cleaning:
389     echo "======================"
390     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
391     cmdCLN="./testreport -clean"
392     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
393     $cmdCLN >> $tdir/output_$tt 2>&1
394     echo "======================"
395     echo "" | tee -a $tdir/output_$tt
396     fi
397    
398     #-- run the testreport command:
399     echo -n "Running testreport using:" | tee -a $tdir/output_$tt
400     if test "x$OPTFILE" != x ; then
401     comm="$comm -of=$OPTFILE"
402     fi
403 jmc 1.17 echo '' | tee -a $tdir/output_$tt
404     if test $MPI != 0 ; then comm="$comm -MPI $MPI" ; fi
405 jmc 1.1 if test "x$option" != x ; then comm="$comm $option" ; fi
406     #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
407     echo " \"eval $comm\"" | tee -a $tdir/output_$tt
408     echo "======================"
409     eval $comm >> $tdir/output_$tt 2>&1
410     sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt
411     echo "" | tee -a $tdir/output_$tt
412    
413     #-- also test restart (test 2+2=4)
414     if test $tt != $typ
415     then
416     echo "testing restart using:" | tee -a $tdir/output_$tt
417     comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org"
418     if test $MPI = 0 ; then
419     echo " \"$comm\"" | tee -a $tdir/output_$tt
420     echo "======================"
421     $comm >> $tdir/output_$tt 2>&1
422     else
423 jmc 1.17 echo " \"$comm -mpi\"" | tee -a $tdir/output_$tt
424 jmc 1.1 echo "======================"
425 jmc 1.17 $comm -mpi >> $tdir/output_$tt 2>&1
426 jmc 1.1 fi
427     echo ; cat tst_2+2_out.txt
428     echo
429     fi
430     export OMP_NUM_THREADS=1
431    
432     if test $sepDir = 0 ; then
433     #-- cleaning:
434     echo "======================"
435     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
436     if test $tt != $typ ; then
437     cmdCLN="../tools/do_tst_2+2 -clean"
438     echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt
439     $cmdCLN >> $tdir/output_$tt 2>&1
440     fi
441     if test $tt != $last_Tst ; then
442     cmdCLN="./testreport -clean"
443     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
444     $cmdCLN >> $tdir/output_$tt 2>&1
445     fi
446     echo "======================"
447     echo
448     fi
449     cd $tdir
450    
451     done

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