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jmc |
1.1 |
#! /usr/bin/env bash |
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jmc |
1.5 |
# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_baudelaire,v 1.4 2018/02/24 17:33:55 jmc Exp $ |
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jmc |
1.1 |
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# Test script for MITgcm that should work on most of the x86_64 Linux machines. |
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tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi |
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if test $tst_grp != 'a' -a $tst_grp != 'b' ; then |
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echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" |
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exit 1 |
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fi |
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#- defaults |
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#export PATH="$PATH:/usr/local/bin" |
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if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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# Turn off stack limit for FIZHI & AD-tests |
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ulimit -s unlimited |
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# MPI test (for now, only with gfortran) |
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export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 |
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export MPI_INC_DIR=$MPI_GCC_DIR/include |
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export PATH="$PATH:$MPI_GCC_DIR/bin" |
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jmc |
1.5 |
#- method to access CVS: |
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jmc |
1.1 |
cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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cmdCVS='cvs -d /u/gcmpack' |
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# export CVS_RSH=ssh |
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# cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack' |
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jmc |
1.5 |
#- which GitHub repository to use and how to access it: |
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jmc |
1.3 |
git_repo='MITgcm'; git_code='MITgcm' |
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#git_repo='altMITgcm'; #git_code='MITgcm66h' |
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jmc |
1.5 |
#-- |
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#git_repo="https://github.com/$git_repo" |
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git_repo="git://github.com/$git_repo" |
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#git_repo="git@github.com:$git_repo" |
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jmc |
1.1 |
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# checkOut=3 : clone from GitHub and make a new copy (if sepDir) |
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# =2 : update (git pull) repo and make a new copy code (switch to 2 if no repo) |
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# =1 : skip update but use a new copy (if sepDir) |
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# =0 : use existing test code ( switch to 1 if missing test code ) |
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dInWeek=`date +%a` |
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dNam=`hostname -s | tr '[:upper:]' '[:lower:]'` |
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#TESTDIR="$HOME/test_${dNam}" |
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#outDir=$dNam |
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#MC=11 |
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TESTDIR="/scratch/jmc/test_${dNam}" |
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outDir="${dNam}-${tst_grp}" |
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MC=13 |
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sepDir=1 |
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option= |
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if test $tst_grp = 'a' ; then |
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checkOut=2 |
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tst_list='g7a mpa mth mp2+rs mpi oad' |
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#tst_list='mpa adm mpi gfo+rs mth+rs' |
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#tst_list="$tst_list oad" |
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else |
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checkOut=1 |
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tst_list='adm g77 gfo+rs ifc' |
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if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi |
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fi |
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echo " test: $outDir ; list='$tst_list'" |
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#option="-nc" ; checkOut=0 |
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#option="-q" ; checkOut=0 |
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TODAY=`date +%d` |
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tmpFil="/tmp/"`basename $0`".$$" |
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tdir=$TESTDIR |
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updFile='updated_code' ; today=`date +%Y%m%d` |
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if [ $checkOut -le 1 ] ; then |
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if test -e $tdir/MITgcm_today/doc ; then |
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echo $tdir/MITgcm_today/doc 'exist' |
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else |
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echo -n $tdir/MITgcm_today 'missing ; ' |
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checkOut=2 |
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echo "will make a new copy ( checkOut=$checkOut )" |
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fi |
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fi |
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if [ $checkOut -ge 2 ] ; then |
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#---- cleaning: |
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if test -e $tdir ; then |
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#- remove date/lock-file: |
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if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi |
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echo -n "Removing working copy: $tdir/MITgcm_today ..." |
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test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today |
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else |
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echo -n "Creating a working dir: $tdir ..." |
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mkdir $tdir |
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fi |
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echo " done" |
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cd $tdir |
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#---- Making a new clone or updating existing one: |
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jmc |
1.4 |
if [ $checkOut -eq 2 ] ; then |
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if test -e MITgcm/.git/config ; then |
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echo MITgcm/.git/config 'exist' |
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else |
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echo -n MITgcm/.git/config 'missing ; ' |
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checkOut=3 |
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echo "will get new clone ( checkOut=$checkOut )" |
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fi |
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jmc |
1.1 |
fi |
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if [ $checkOut -eq 3 ] ; then |
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jmc |
1.4 |
test -e $git_code && rm -rf $git_code |
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jmc |
1.1 |
echo -n "Make a clone of $git_code from repo: $git_repo ..." |
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jmc |
1.5 |
git clone $git_repo/${git_code}.git 2> $tmpFil |
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jmc |
1.1 |
retVal=$? |
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if test $retVal = 0 ; then |
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echo ' --> done!' |
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rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil |
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rm -f $tmpFil |
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exit 2 |
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fi |
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else |
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echo "Updating current clone ( $git_code ) ..." |
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( cd $git_code ; git pull ) |
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jmc |
1.4 |
retVal=$? |
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if test $retVal = 0 ; then |
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echo ' --> done!' |
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else |
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echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit 3 |
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fi |
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jmc |
1.1 |
fi |
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#---- making a new working copy: MITgcm_today |
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( cd $git_code ; git checkout master ) |
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# mkdir MITgcm_today |
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# cp -p -ra $git_code/* MITgcm_today |
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rsync -a $git_code/ MITgcm_today --exclude '.git' |
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#---- updating "other_input" dir |
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if test -d other_input ; then |
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list_dirs=`(cd other_input ; ls 2> /dev/null )` |
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echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:" |
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for exd in $list_dirs ; do |
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if test -d other_input/$exd/CVS ; then echo " $exd" |
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( cd other_input/$exd ; $cmdCVS update -P -d ) |
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fi |
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done |
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echo " <-- update of 'other_input' dirs done" |
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fi |
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#---- update date/lock-file: |
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echo $today > $updFile ; sleep 2 ; ls -l $updFile |
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else |
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cd $tdir |
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fi |
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#------------------------------------------------------------------------ |
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firstTst=`echo $tst_list | awk '{print $1}'` |
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last_Tst=`echo $tst_list | awk '{print $NF}'` |
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for tt in $tst_list |
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do |
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echo "================================================================" |
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typ=`echo $tt | sed 's/+rs//'` |
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#- define list of additional experiences to test: |
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addExp='' |
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if test $typ = 'mp2' -o $typ = 'ifc' ; then |
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addExp="offline_cheapaml atm_gray" |
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fi |
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if test $typ = 'gfo' -o $typ = 'ifc' ; then |
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addExp="$addExp global_oce_biogeo_bling" |
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addExp="$addExp shelfice_remeshing" |
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fi |
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if test $typ = 'mpi' ; then |
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#addExp="$addExp global_ocean.gm_k3d" |
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addExp="$addExp global_oce_cs32" |
| 178 |
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fi |
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#- check day and time: |
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curDay=`date +%d` ; curHour=`date +%H` |
| 181 |
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if [ $curDay -ne $TODAY ] ; then |
| 182 |
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date ; echo "day is over => skip test $typ" |
| 183 |
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continue |
| 184 |
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fi |
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if [ $curHour -ge 18 ] ; then |
| 186 |
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date ; echo "too late to run test $typ" |
| 187 |
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continue |
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fi |
| 189 |
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if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then |
| 190 |
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echo "using option='$option' prevent multi-tests => skip test $typ" |
| 191 |
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continue |
| 192 |
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fi |
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#- clean-up old output files |
| 194 |
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if test -d $tdir/prev ; then |
| 195 |
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mv -f $tdir/output_${typ}* $tdir/prev |
| 196 |
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else |
| 197 |
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rm -f $tdir/output_${typ}* |
| 198 |
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fi |
| 199 |
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touch $tdir/output_$tt |
| 200 |
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echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt |
| 201 |
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date >> $tdir/output_$tt |
| 202 |
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echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt |
| 203 |
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if test $sepDir = 1 ; then |
| 204 |
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new_dir="MITgcm_$typ" |
| 205 |
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reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi |
| 206 |
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if test -d $new_dir/CVS -a $reUse = 1 ; then |
| 207 |
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cd $tdir/$new_dir |
| 208 |
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if test $tt != $typ ; then |
| 209 |
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( cd verification ; ../tools/do_tst_2+2 -clean ) |
| 210 |
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fi |
| 211 |
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else |
| 212 |
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if test -d prev ; then |
| 213 |
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#-- save previous summary: |
| 214 |
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oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 215 |
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if test "x$oldS" != x ; then |
| 216 |
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cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ |
| 217 |
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touch -r $oldS prev/tr_out.$typ |
| 218 |
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fi |
| 219 |
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if test $tt != $typ ; then |
| 220 |
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oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 221 |
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if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi |
| 222 |
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fi |
| 223 |
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fi |
| 224 |
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echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt |
| 225 |
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test -e $new_dir && rm -rf $new_dir |
| 226 |
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mkdir $new_dir |
| 227 |
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#- before making a copy, check that code has been updated |
| 228 |
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nCount=0; today=`date +%Y%m%d` |
| 229 |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
| 230 |
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while [ $today -gt $updDate ] ; do |
| 231 |
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nCount=`expr $nCount + 1` |
| 232 |
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if [ $nCount -gt 40 ] ; then |
| 233 |
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echo " waiting too long (nCount=$nCount) for updated code" |
| 234 |
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echo " today=$today , updDate=$updDate " |
| 235 |
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ls -l $updFile |
| 236 |
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exit |
| 237 |
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fi |
| 238 |
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sleep 60 |
| 239 |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
| 240 |
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done |
| 241 |
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ls -l $updFile | tee -a $tdir/output_$tt |
| 242 |
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echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt |
| 243 |
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#----------------------------- |
| 244 |
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if test -d MITgcm_today -a -d $new_dir ; then |
| 245 |
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echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt |
| 246 |
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cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt |
| 247 |
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else |
| 248 |
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if test -d MITgcm_today ; then |
| 249 |
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echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt |
| 250 |
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else |
| 251 |
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echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt |
| 252 |
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fi |
| 253 |
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continue |
| 254 |
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fi |
| 255 |
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echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt |
| 256 |
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cd $tdir/$new_dir |
| 257 |
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retVal=$? |
| 258 |
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( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt |
| 259 |
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if test -d verification ; then |
| 260 |
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echo " check: dir verification exist" | tee -a $tdir/output_$tt |
| 261 |
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else |
| 262 |
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echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt |
| 263 |
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continue |
| 264 |
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fi |
| 265 |
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#-- download additional experience from Contrib: |
| 266 |
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for exp2add in $addExp ; do |
| 267 |
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echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $tdir/output_$tt |
| 268 |
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( cd verification ; $cmdCVS co -P -d $exp2add \ |
| 269 |
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MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
| 270 |
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if test $exp2add = 'global_oce_cs32' ; then |
| 271 |
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echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt |
| 272 |
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( cd verification/${exp2add} |
| 273 |
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ln -s ../../../other_input/core2_cnyf . ) |
| 274 |
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fi |
| 275 |
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if test $exp2add = 'shelfice_remeshing' ; then |
| 276 |
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echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt |
| 277 |
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( cd verification/${exp2add} |
| 278 |
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ln -s ../../../other_input/remeshing_code extra_code ) |
| 279 |
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fi |
| 280 |
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done |
| 281 |
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fi |
| 282 |
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else |
| 283 |
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cd $tdir/MITgcm_today |
| 284 |
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fi |
| 285 |
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cd verification |
| 286 |
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| 287 |
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#-- set the testreport command: |
| 288 |
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comm="./testreport" |
| 289 |
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if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then |
| 290 |
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comm="$comm -adm" |
| 291 |
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elif test $typ = 'oad' ; then |
| 292 |
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comm="$comm -oad" |
| 293 |
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elif test $typ = 'tlm' ; then |
| 294 |
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comm="$comm -tlm" |
| 295 |
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elif test $typ = 'mth' -o $typ = 'mp2' ; then |
| 296 |
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export GOMP_STACKSIZE=400m |
| 297 |
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export OMP_NUM_THREADS=2 |
| 298 |
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comm="$comm -mth" |
| 299 |
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else |
| 300 |
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comm="$comm -md cyrus-makedepend" |
| 301 |
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fi |
| 302 |
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comm="$comm -odir $outDir -a jm_c@mitgcm.org" |
| 303 |
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#-- set the optfile (+ mpi & match-precision) |
| 304 |
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MPI=0 |
| 305 |
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case $typ in |
| 306 |
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'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; |
| 307 |
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'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" |
| 308 |
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 309 |
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'ifc') comm="$comm -devel" |
| 310 |
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OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; |
| 311 |
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'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; |
| 312 |
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'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 |
| 313 |
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 314 |
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*) OPTFILE= ;; |
| 315 |
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esac |
| 316 |
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#-- set MPI command: |
| 317 |
|
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if test $MPI != 0 ; then |
| 318 |
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if test $typ = 'mp2' ; then MPI=3 ; fi |
| 319 |
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if test $typ = 'mpa' ; then |
| 320 |
|
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EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" |
| 321 |
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else |
| 322 |
|
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EXE="mpirun -np TR_NPROC ./mitgcmuv" |
| 323 |
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fi |
| 324 |
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fi |
| 325 |
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| 326 |
|
|
#-- set specific Env Vars: |
| 327 |
|
|
if test $typ = 'oad' ; then |
| 328 |
jmc |
1.2 |
#- for some reasons, "source ScriptFile | tee -a LogFile" |
| 329 |
|
|
# does run the script but does not keep the env-var settings |
| 330 |
|
|
source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt |
| 331 |
jmc |
1.1 |
fi |
| 332 |
|
|
if test $typ = 'ifc' ; then |
| 333 |
|
|
source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 |
| 334 |
|
|
fi |
| 335 |
|
|
if test $typ = 'pgi' ; then |
| 336 |
|
|
#listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' |
| 337 |
|
|
export PGI=/srv/software/pgi/pgi-10.9 |
| 338 |
|
|
export PATH="$PATH:$PGI/linux86-64/10.9/bin" |
| 339 |
|
|
export LM_LICENSE_FILE=$PGI/license.dat |
| 340 |
|
|
fi |
| 341 |
|
|
|
| 342 |
|
|
if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then |
| 343 |
|
|
#-- cleaning: |
| 344 |
|
|
echo "======================" |
| 345 |
|
|
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 346 |
|
|
cmdCLN="./testreport -clean" |
| 347 |
|
|
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 348 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 349 |
|
|
echo "======================" |
| 350 |
|
|
echo "" | tee -a $tdir/output_$tt |
| 351 |
|
|
fi |
| 352 |
|
|
|
| 353 |
|
|
#-- run the testreport command: |
| 354 |
|
|
echo -n "Running testreport using:" | tee -a $tdir/output_$tt |
| 355 |
|
|
if test "x$OPTFILE" != x ; then |
| 356 |
|
|
comm="$comm -of=$OPTFILE" |
| 357 |
|
|
fi |
| 358 |
|
|
if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt |
| 359 |
|
|
else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt |
| 360 |
|
|
comm="$comm -MPI $MPI -command \"\$EXE\"" |
| 361 |
|
|
fi |
| 362 |
|
|
if test "x$option" != x ; then comm="$comm $option" ; fi |
| 363 |
|
|
#if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi |
| 364 |
|
|
echo " \"eval $comm\"" | tee -a $tdir/output_$tt |
| 365 |
|
|
echo "======================" |
| 366 |
|
|
eval $comm >> $tdir/output_$tt 2>&1 |
| 367 |
|
|
sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt |
| 368 |
|
|
echo "" | tee -a $tdir/output_$tt |
| 369 |
|
|
|
| 370 |
|
|
#-- also test restart (test 2+2=4) |
| 371 |
|
|
if test $tt != $typ |
| 372 |
|
|
then |
| 373 |
|
|
echo "testing restart using:" | tee -a $tdir/output_$tt |
| 374 |
|
|
comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org" |
| 375 |
|
|
if test $MPI = 0 ; then |
| 376 |
|
|
echo " \"$comm\"" | tee -a $tdir/output_$tt |
| 377 |
|
|
echo "======================" |
| 378 |
|
|
$comm >> $tdir/output_$tt 2>&1 |
| 379 |
|
|
else |
| 380 |
|
|
echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt |
| 381 |
|
|
echo "======================" |
| 382 |
|
|
$comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 |
| 383 |
|
|
fi |
| 384 |
|
|
echo ; cat tst_2+2_out.txt |
| 385 |
|
|
echo |
| 386 |
|
|
fi |
| 387 |
|
|
export OMP_NUM_THREADS=1 |
| 388 |
|
|
|
| 389 |
|
|
if test $sepDir = 0 ; then |
| 390 |
|
|
#-- cleaning: |
| 391 |
|
|
echo "======================" |
| 392 |
|
|
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 393 |
|
|
if test $tt != $typ ; then |
| 394 |
|
|
cmdCLN="../tools/do_tst_2+2 -clean" |
| 395 |
|
|
echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt |
| 396 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 397 |
|
|
fi |
| 398 |
|
|
if test $tt != $last_Tst ; then |
| 399 |
|
|
cmdCLN="./testreport -clean" |
| 400 |
|
|
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 401 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 402 |
|
|
fi |
| 403 |
|
|
echo "======================" |
| 404 |
|
|
echo |
| 405 |
|
|
fi |
| 406 |
|
|
cd $tdir |
| 407 |
|
|
|
| 408 |
|
|
done |
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