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Revision 1.14 - (hide annotations) (download)
Sun Sep 22 16:29:14 2019 UTC (5 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.13: +2 -2 lines
cleaner

1 jmc 1.1 #! /usr/bin/env bash
2    
3 jmc 1.14 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_baudelaire,v 1.13 2019/09/18 16:02:32 jmc Exp $
4 jmc 1.1
5     # Test script for MITgcm that should work on most of the x86_64 Linux machines.
6    
7     tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi
8     if test $tst_grp != 'a' -a $tst_grp != 'b' ; then
9     echo "missing or invalid argument (expect: 'a' or 'b') ==> exit"
10     exit 1
11     fi
12    
13     #- defaults
14     #export PATH="$PATH:/usr/local/bin"
15     if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
16     #- to get case insensitive "ls" (and order of tested experiments)
17     export LC_ALL="en_US.UTF-8"
18     # Turn off stack limit for FIZHI & AD-tests
19     ulimit -s unlimited
20     # MPI test (for now, only with gfortran)
21     export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3
22     export MPI_INC_DIR=$MPI_GCC_DIR/include
23     export PATH="$PATH:$MPI_GCC_DIR/bin"
24    
25 jmc 1.5 #- method to access CVS:
26 jmc 1.1 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
27     cmdCVS='cvs -d /u/gcmpack'
28     # export CVS_RSH=ssh
29     # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
30    
31 jmc 1.5 #- which GitHub repository to use and how to access it:
32 jmc 1.7 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
33 jmc 1.3 #git_repo='altMITgcm'; #git_code='MITgcm66h'
34 jmc 1.5 #--
35     #git_repo="https://github.com/$git_repo"
36     git_repo="git://github.com/$git_repo"
37     #git_repo="git@github.com:$git_repo"
38 jmc 1.1
39 jmc 1.12 #-------------------------------------------------------------------
40 jmc 1.1 # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
41 jmc 1.12 # =2 : update (git pull) repo and make a new copy code (switch to 3 if no repo)
42 jmc 1.1 # =1 : skip update but use a new copy (if sepDir)
43     # =0 : use existing test code ( switch to 1 if missing test code )
44     dInWeek=`date +%a`
45    
46     dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
47     #TESTDIR="$HOME/test_${dNam}"
48     TESTDIR="/scratch/jmc/test_${dNam}"
49 jmc 1.13 MC=13 ; outDir="${dNam}-${tst_grp}"
50     #MC=11 ; outDir=$dNam
51 jmc 1.1 sepDir=1
52     option=
53    
54     if test $tst_grp = 'a' ; then
55     checkOut=2
56 jmc 1.11 tst_list='mpa mth mp2+rs mpi oad'
57 jmc 1.1 #tst_list='mpa adm mpi gfo+rs mth+rs'
58     #tst_list="$tst_list oad"
59     else
60     checkOut=1
61     tst_list='adm g77 gfo+rs ifc'
62     if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
63     fi
64     echo " test: $outDir ; list='$tst_list'"
65    
66     #option="-nc" ; checkOut=0
67     #option="-q" ; checkOut=0
68    
69     TODAY=`date +%d`
70     tmpFil="/tmp/"`basename $0`".$$"
71     tdir=$TESTDIR
72     updFile='updated_code' ; today=`date +%Y%m%d`
73    
74     if [ $checkOut -le 1 ] ; then
75     if test -e $tdir/MITgcm_today/doc ; then
76     echo $tdir/MITgcm_today/doc 'exist'
77     else
78     echo -n $tdir/MITgcm_today 'missing ; '
79     checkOut=2
80     echo "will make a new copy ( checkOut=$checkOut )"
81     fi
82     fi
83    
84     if [ $checkOut -ge 2 ] ; then
85     #---- cleaning:
86     if test -e $tdir ; then
87     #- remove date/lock-file:
88     if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi
89     echo -n "Removing working copy: $tdir/MITgcm_today ..."
90     test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today
91     else
92     echo -n "Creating a working dir: $tdir ..."
93     mkdir $tdir
94     fi
95     echo " done"
96     cd $tdir
97    
98     #---- Making a new clone or updating existing one:
99 jmc 1.4 if [ $checkOut -eq 2 ] ; then
100 jmc 1.7 if test -e $git_code/.git/config ; then
101     echo $git_code/.git/config 'exist'
102 jmc 1.4 else
103 jmc 1.7 echo -n $git_code/.git/config 'missing ; '
104     checkOut=3
105     echo "will get new clone ( checkOut=$checkOut )"
106     fi
107     if test -e $git_other/.git/config ; then
108     echo $git_other/.git/config 'exist'
109     else
110     echo -n $git_other/.git/config 'missing ; '
111 jmc 1.4 checkOut=3
112     echo "will get new clone ( checkOut=$checkOut )"
113     fi
114 jmc 1.1 fi
115     if [ $checkOut -eq 3 ] ; then
116 jmc 1.4 test -e $git_code && rm -rf $git_code
117 jmc 1.7 echo "Make a clone of $git_code from repo: $git_repo ..."
118 jmc 1.5 git clone $git_repo/${git_code}.git 2> $tmpFil
119 jmc 1.1 retVal=$?
120     if test $retVal = 0 ; then
121     echo ' --> done!'
122     rm -f $tmpFil
123     else
124     echo " Error: 'git clone' returned: $retVal"
125     cat $tmpFil
126     rm -f $tmpFil
127     exit 2
128     fi
129 jmc 1.7 test -e $git_other && rm -rf $git_other
130     echo "Make a clone of $git_other from repo: $git_repo ..."
131     git clone $git_repo/${git_other}.git 2> $tmpFil
132     retVal=$?
133     if test $retVal = 0 ; then
134     echo ' --> done!'
135     rm -f $tmpFil
136     else
137     echo " Error: 'git clone' returned: $retVal"
138     cat $tmpFil
139     rm -f $tmpFil
140     exit 2
141     fi
142 jmc 1.1 else
143     echo "Updating current clone ( $git_code ) ..."
144     ( cd $git_code ; git pull )
145 jmc 1.4 retVal=$?
146     if test $retVal = 0 ; then
147     echo ' --> done!'
148     else
149     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
150     exit 3
151     fi
152 jmc 1.8 ( cd $git_code ; git checkout master -- . )
153 jmc 1.7 echo "Updating current clone ( $git_other ) ..."
154     ( cd $git_other ; git pull )
155     retVal=$?
156     if test $retVal = 0 ; then
157     echo ' --> done!'
158     else
159     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
160     exit 3
161     fi
162 jmc 1.8 ( cd $git_other ; git checkout master -- . )
163 jmc 1.1 fi
164     #---- making a new working copy: MITgcm_today
165     rsync -a $git_code/ MITgcm_today --exclude '.git'
166 jmc 1.7 if test $sepDir = 0 ; then
167     echo -n " make a local copy of $git_other in MITgcm_today ..." | tee -a $tdir/output_$tt
168     ( cd MITgcm_today
169     rsync -a ../$git_other/ $git_other --exclude '.git' )
170     echo " done" | tee -a $tdir/output_$tt
171     fi
172 jmc 1.1 #---- updating "other_input" dir
173     if test -d other_input ; then
174     list_dirs=`(cd other_input ; ls 2> /dev/null )`
175     echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:"
176     for exd in $list_dirs ; do
177     if test -d other_input/$exd/CVS ; then echo " $exd"
178     ( cd other_input/$exd ; $cmdCVS update -P -d )
179     fi
180     done
181     echo " <-- update of 'other_input' dirs done"
182     fi
183     #---- update date/lock-file:
184     echo $today > $updFile ; sleep 2 ; ls -l $updFile
185     else
186     cd $tdir
187     fi
188    
189     #------------------------------------------------------------------------
190    
191     firstTst=`echo $tst_list | awk '{print $1}'`
192     last_Tst=`echo $tst_list | awk '{print $NF}'`
193     for tt in $tst_list
194     do
195    
196     echo "================================================================"
197     typ=`echo $tt | sed 's/+rs//'`
198     #- define list of additional experiences to test:
199     addExp=''
200     if test $typ = 'mp2' -o $typ = 'ifc' ; then
201 jmc 1.9 addExp="offline_cheapaml atm_gray atm_strato"
202 jmc 1.1 fi
203 jmc 1.10 if test $typ = 'gfo' -o $typ = 'ifc' -o $typ = 'adm' ; then
204     addExp="$addExp global_oce_biogeo_bling"
205     fi
206 jmc 1.1 if test $typ = 'gfo' -o $typ = 'ifc' ; then
207     addExp="$addExp shelfice_remeshing"
208     fi
209     if test $typ = 'mpi' ; then
210     #addExp="$addExp global_ocean.gm_k3d"
211     addExp="$addExp global_oce_cs32"
212     fi
213     #- check day and time:
214     curDay=`date +%d` ; curHour=`date +%H`
215     if [ $curDay -ne $TODAY ] ; then
216     date ; echo "day is over => skip test $typ"
217     continue
218     fi
219     if [ $curHour -ge 18 ] ; then
220     date ; echo "too late to run test $typ"
221     continue
222     fi
223     if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then
224     echo "using option='$option' prevent multi-tests => skip test $typ"
225     continue
226     fi
227     #- clean-up old output files
228     if test -d $tdir/prev ; then
229     mv -f $tdir/output_${typ}* $tdir/prev
230     else
231     rm -f $tdir/output_${typ}*
232     fi
233     touch $tdir/output_$tt
234     echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt
235     date >> $tdir/output_$tt
236     echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt
237     if test $sepDir = 1 ; then
238     new_dir="MITgcm_$typ"
239     reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
240 jmc 1.12 if test -d $new_dir/doc -a $reUse = 1 ; then
241 jmc 1.1 cd $tdir/$new_dir
242     if test $tt != $typ ; then
243     ( cd verification ; ../tools/do_tst_2+2 -clean )
244     fi
245     else
246     if test -d prev ; then
247     #-- save previous summary:
248     oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1`
249     if test "x$oldS" != x ; then
250     cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ
251     touch -r $oldS prev/tr_out.$typ
252     fi
253     if test $tt != $typ ; then
254     oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1`
255     if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi
256     fi
257     fi
258     echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt
259     test -e $new_dir && rm -rf $new_dir
260     mkdir $new_dir
261     #- before making a copy, check that code has been updated
262     nCount=0; today=`date +%Y%m%d`
263     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
264     while [ $today -gt $updDate ] ; do
265     nCount=`expr $nCount + 1`
266     if [ $nCount -gt 40 ] ; then
267     echo " waiting too long (nCount=$nCount) for updated code"
268     echo " today=$today , updDate=$updDate "
269     ls -l $updFile
270     exit
271     fi
272     sleep 60
273     updDate=0 ; test -f $updFile && updDate=`cat $updFile`
274     done
275     ls -l $updFile | tee -a $tdir/output_$tt
276     echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt
277     #-----------------------------
278     if test -d MITgcm_today -a -d $new_dir ; then
279     echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt
280     cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt
281     else
282     if test -d MITgcm_today ; then
283     echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt
284     else
285     echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt
286     fi
287     continue
288     fi
289     echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt
290     cd $tdir/$new_dir
291     retVal=$?
292     ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt
293     if test -d verification ; then
294     echo " check: dir verification exist" | tee -a $tdir/output_$tt
295     else
296     echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt
297     continue
298     fi
299 jmc 1.7 if test "x$addExp" != x ; then
300     echo -n " make a local copy of $git_other ..." | tee -a $tdir/output_$tt
301     rsync -a $tdir/$git_other/ $git_other --exclude '.git'
302     echo " done" | tee -a $tdir/output_$tt
303     fi
304     #-- add additional experience from $git_other
305 jmc 1.1 for exp2add in $addExp ; do
306 jmc 1.7 echo " add link: $exp2add (from $git_other )" | tee -a $tdir/output_$tt
307     ( cd verification ; ln -s ../$git_other/$exp2add . )
308 jmc 1.1 if test $exp2add = 'global_oce_cs32' ; then
309 jmc 1.7 echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt
310 jmc 1.14 ( cd ${git_other}/${exp2add}
311 jmc 1.1 ln -s ../../../other_input/core2_cnyf . )
312     fi
313 jmc 1.6 #if test $exp2add = 'shelfice_remeshing' ; then
314     # echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
315     # ( cd verification/${exp2add}
316     # ln -s ../../../other_input/remeshing_code extra_code )
317     #fi
318 jmc 1.1 done
319     fi
320     else
321     cd $tdir/MITgcm_today
322     fi
323     cd verification
324    
325     #-- set the testreport command:
326     comm="./testreport"
327     if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then
328     comm="$comm -adm"
329     elif test $typ = 'oad' ; then
330     comm="$comm -oad"
331     elif test $typ = 'tlm' ; then
332     comm="$comm -tlm"
333     elif test $typ = 'mth' -o $typ = 'mp2' ; then
334     export GOMP_STACKSIZE=400m
335     export OMP_NUM_THREADS=2
336     comm="$comm -mth"
337     else
338     comm="$comm -md cyrus-makedepend"
339     fi
340     comm="$comm -odir $outDir -a jm_c@mitgcm.org"
341     #-- set the optfile (+ mpi & match-precision)
342     MPI=0
343     case $typ in
344     'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;;
345     'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel"
346     OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
347     'ifc') comm="$comm -devel"
348     OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
349     'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
350     'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6
351     OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
352     *) OPTFILE= ;;
353     esac
354     #-- set MPI command:
355     if test $MPI != 0 ; then
356     if test $typ = 'mp2' ; then MPI=3 ; fi
357     if test $typ = 'mpa' ; then
358     EXE="mpirun -np TR_NPROC ./mitgcmuv_ad"
359     else
360     EXE="mpirun -np TR_NPROC ./mitgcmuv"
361     fi
362     fi
363    
364     #-- set specific Env Vars:
365     if test $typ = 'oad' ; then
366 jmc 1.2 #- for some reasons, "source ScriptFile | tee -a LogFile"
367     # does run the script but does not keep the env-var settings
368     source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt
369 jmc 1.1 fi
370     if test $typ = 'ifc' ; then
371     source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64
372     fi
373     if test $typ = 'pgi' ; then
374     #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20'
375     export PGI=/srv/software/pgi/pgi-10.9
376     export PATH="$PATH:$PGI/linux86-64/10.9/bin"
377     export LM_LICENSE_FILE=$PGI/license.dat
378     fi
379    
380     if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then
381     #-- cleaning:
382     echo "======================"
383     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
384     cmdCLN="./testreport -clean"
385     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
386     $cmdCLN >> $tdir/output_$tt 2>&1
387     echo "======================"
388     echo "" | tee -a $tdir/output_$tt
389     fi
390    
391     #-- run the testreport command:
392     echo -n "Running testreport using:" | tee -a $tdir/output_$tt
393     if test "x$OPTFILE" != x ; then
394     comm="$comm -of=$OPTFILE"
395     fi
396     if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt
397     else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt
398     comm="$comm -MPI $MPI -command \"\$EXE\""
399     fi
400     if test "x$option" != x ; then comm="$comm $option" ; fi
401     #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
402     echo " \"eval $comm\"" | tee -a $tdir/output_$tt
403     echo "======================"
404     eval $comm >> $tdir/output_$tt 2>&1
405     sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt
406     echo "" | tee -a $tdir/output_$tt
407    
408     #-- also test restart (test 2+2=4)
409     if test $tt != $typ
410     then
411     echo "testing restart using:" | tee -a $tdir/output_$tt
412     comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org"
413     if test $MPI = 0 ; then
414     echo " \"$comm\"" | tee -a $tdir/output_$tt
415     echo "======================"
416     $comm >> $tdir/output_$tt 2>&1
417     else
418     echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt
419     echo "======================"
420     $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1
421     fi
422     echo ; cat tst_2+2_out.txt
423     echo
424     fi
425     export OMP_NUM_THREADS=1
426    
427     if test $sepDir = 0 ; then
428     #-- cleaning:
429     echo "======================"
430     echo "Cleaning test directories:" | tee -a $tdir/output_$tt
431     if test $tt != $typ ; then
432     cmdCLN="../tools/do_tst_2+2 -clean"
433     echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt
434     $cmdCLN >> $tdir/output_$tt 2>&1
435     fi
436     if test $tt != $last_Tst ; then
437     cmdCLN="./testreport -clean"
438     echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
439     $cmdCLN >> $tdir/output_$tt 2>&1
440     fi
441     echo "======================"
442     echo
443     fi
444     cd $tdir
445    
446     done

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