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Revision 1.9 - (show annotations) (download)
Thu Oct 17 22:45:03 2019 UTC (5 years, 9 months ago) by jmc
Branch: MAIN
Changes since 1.8: +2 -1 lines
add experiment "global_ocean.gm_res" to MPI test

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_batsi,v 1.8 2019/09/22 16:29:14 jmc Exp $
4
5 # Test script for MITgcm that should work on most of the x86_64 Linux machines.
6
7 tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi
8 if test $tst_grp != 'a' -a $tst_grp != 'b' ; then
9 echo "missing or invalid argument (expect: 'a' or 'b') ==> exit"
10 exit 1
11 fi
12
13 #- defaults
14 #export PATH="$PATH:/usr/local/bin"
15 if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
16 #- to get case insensitive "ls" (and order of tested experiments)
17 export LC_ALL="en_US.UTF-8"
18 # Turn off stack limit for FIZHI & AD-tests
19 ulimit -s unlimited
20 # MPI test (for now, only with gfortran)
21 source $HOME/bin/openmpi.sh
22
23 #- method to access CVS:
24 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
25 # cmdCVS='cvs -d /u/gcmpack'
26 # export CVS_RSH=ssh
27 # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
28
29 #- which GitHub repository to use and how to access it:
30 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
31 #git_repo='altMITgcm'; #git_code='MITgcm66h'
32 #--
33 git_repo="https://github.com/$git_repo"
34 #git_repo="git://github.com/$git_repo"
35 #git_repo="git@github.com:$git_repo"
36
37 #-------------------------------------------------------------------
38 # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
39 # =2 : update (git pull) repo and make a new copy code (switch to 3 if no repo)
40 # =1 : skip update but use a new copy (if sepDir)
41 # =0 : use existing test code ( switch to 1 if missing test code )
42 dInWeek=`date +%a`
43
44 dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
45 TESTDIR="$HOME/test_${dNam}"
46 #TESTDIR="/scratch/jmc/test_${dNam}"
47 #MC=13 ; outDir="${dNam}-${tst_grp}"
48 MC=11 ; outDir=$dNam
49 sepDir=1
50 option=
51
52 if test $tst_grp = 'a' ; then
53 checkOut=2
54 #tst_list='g7a mpa mth mp2+rs mpi oad'
55 tst_list='mpa adm g7a mpi mth+rs gfo+rs g77'
56 #tst_list="$tst_list oad"
57 else
58 checkOut=1
59 tst_list='adm g77 gfo+rs ifc'
60 if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
61 fi
62 echo " test: $outDir ; list='$tst_list'"
63
64 #option="-nc" ; checkOut=0
65 #option="-q" ; checkOut=0
66
67 TODAY=`date +%d`
68 tmpFil="/tmp/"`basename $0`".$$"
69 tdir=$TESTDIR
70 updFile='updated_code' ; today=`date +%Y%m%d`
71
72 if [ $checkOut -le 1 ] ; then
73 if test -e $tdir/MITgcm_today/doc ; then
74 echo $tdir/MITgcm_today/doc 'exist'
75 else
76 echo -n $tdir/MITgcm_today 'missing ; '
77 checkOut=2
78 echo "will make a new copy ( checkOut=$checkOut )"
79 fi
80 fi
81
82 if [ $checkOut -ge 2 ] ; then
83 #---- cleaning:
84 if test -e $tdir ; then
85 #- remove date/lock-file:
86 if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi
87 echo -n "Removing working copy: $tdir/MITgcm_today ..."
88 test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today
89 else
90 echo -n "Creating a working dir: $tdir ..."
91 mkdir $tdir
92 fi
93 echo " done"
94 cd $tdir
95
96 #---- Making a new clone or updating existing one:
97 if [ $checkOut -eq 2 ] ; then
98 if test -e $git_code/.git/config ; then
99 echo $git_code/.git/config 'exist'
100 else
101 echo -n $git_code/.git/config 'missing ; '
102 checkOut=3
103 echo "will get new clone ( checkOut=$checkOut )"
104 fi
105 if test -e $git_other/.git/config ; then
106 echo $git_other/.git/config 'exist'
107 else
108 echo -n $git_other/.git/config 'missing ; '
109 checkOut=3
110 echo "will get new clone ( checkOut=$checkOut )"
111 fi
112 fi
113 if [ $checkOut -eq 3 ] ; then
114 test -e $git_code && rm -rf $git_code
115 echo "Make a clone of $git_code from repo: $git_repo ..."
116 git clone $git_repo/${git_code}.git 2> $tmpFil
117 retVal=$?
118 if test $retVal = 0 ; then
119 echo ' --> done!'
120 rm -f $tmpFil
121 else
122 echo " Error: 'git clone' returned: $retVal"
123 cat $tmpFil
124 rm -f $tmpFil
125 exit 2
126 fi
127 test -e $git_other && rm -rf $git_other
128 echo "Make a clone of $git_other from repo: $git_repo ..."
129 git clone $git_repo/${git_other}.git 2> $tmpFil
130 retVal=$?
131 if test $retVal = 0 ; then
132 echo ' --> done!'
133 rm -f $tmpFil
134 else
135 echo " Error: 'git clone' returned: $retVal"
136 cat $tmpFil
137 rm -f $tmpFil
138 exit 2
139 fi
140 else
141 echo "Updating current clone ( $git_code ) ..."
142 ( cd $git_code ; git pull )
143 retVal=$?
144 if test $retVal = 0 ; then
145 echo ' --> done!'
146 else
147 echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
148 exit 3
149 fi
150 ( cd $git_code ; git checkout master -- . )
151 echo "Updating current clone ( $git_other ) ..."
152 ( cd $git_other ; git pull )
153 retVal=$?
154 if test $retVal = 0 ; then
155 echo ' --> done!'
156 else
157 echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
158 exit 3
159 fi
160 ( cd $git_other ; git checkout master -- . )
161 fi
162 #---- making a new working copy: MITgcm_today
163 rsync -a $git_code/ MITgcm_today --exclude '.git'
164 if test $sepDir = 0 ; then
165 echo -n " make a local copy of $git_other in MITgcm_today ..." | tee -a $tdir/output_$tt
166 ( cd MITgcm_today
167 rsync -a ../$git_other/ $git_other --exclude '.git' )
168 echo " done" | tee -a $tdir/output_$tt
169 fi
170 #---- updating "other_input" dir
171 if test -d other_input ; then
172 list_dirs=`(cd other_input ; ls 2> /dev/null )`
173 echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:"
174 for exd in $list_dirs ; do
175 if test -d other_input/$exd/CVS ; then echo " $exd"
176 ( cd other_input/$exd ; $cmdCVS update -P -d )
177 fi
178 done
179 echo " <-- update of 'other_input' dirs done"
180 fi
181 #---- update date/lock-file:
182 echo $today > $updFile ; sleep 2 ; ls -l $updFile
183 else
184 cd $tdir
185 fi
186
187 #------------------------------------------------------------------------
188
189 firstTst=`echo $tst_list | awk '{print $1}'`
190 last_Tst=`echo $tst_list | awk '{print $NF}'`
191 for tt in $tst_list
192 do
193
194 echo "================================================================"
195 typ=`echo $tt | sed 's/+rs//'`
196 #- define list of additional experiences to test:
197 addExp=''
198 if test $typ = 'mpi' ; then
199 addExp="offline_cheapaml atm_gray atm_strato"
200 fi
201 if test $typ = 'gfo' -o $typ = 'ifc' -o $typ = 'mpa' ; then
202 addExp="$addExp global_oce_biogeo_bling"
203 fi
204 if test $typ = 'gfo' -o $typ = 'ifc' ; then
205 addExp="$addExp shelfice_remeshing"
206 fi
207 if test $typ = 'mpi' ; then
208 addExp="$addExp global_ocean.gm_k3d"
209 addExp="$addExp global_ocean.gm_res"
210 addExp="$addExp global_oce_cs32"
211 fi
212 #- check day and time:
213 curDay=`date +%d` ; curHour=`date +%H`
214 if [ $curDay -ne $TODAY ] ; then
215 date ; echo "day is over => skip test $typ"
216 continue
217 fi
218 if [ $curHour -ge 18 ] ; then
219 date ; echo "too late to run test $typ"
220 continue
221 fi
222 if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then
223 echo "using option='$option' prevent multi-tests => skip test $typ"
224 continue
225 fi
226 #- clean-up old output files
227 if test -d $tdir/prev ; then
228 mv -f $tdir/output_${typ}* $tdir/prev
229 else
230 rm -f $tdir/output_${typ}*
231 fi
232 touch $tdir/output_$tt
233 echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt
234 date >> $tdir/output_$tt
235 echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt
236 if test $sepDir = 1 ; then
237 new_dir="MITgcm_$typ"
238 reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
239 if test -d $new_dir/doc -a $reUse = 1 ; then
240 cd $tdir/$new_dir
241 if test $tt != $typ ; then
242 ( cd verification ; ../tools/do_tst_2+2 -clean )
243 fi
244 else
245 if test -d prev ; then
246 #-- save previous summary:
247 oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1`
248 if test "x$oldS" != x ; then
249 cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ
250 touch -r $oldS prev/tr_out.$typ
251 fi
252 if test $tt != $typ ; then
253 oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1`
254 if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi
255 fi
256 fi
257 echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt
258 test -e $new_dir && rm -rf $new_dir
259 mkdir $new_dir
260 #- before making a copy, check that code has been updated
261 nCount=0; today=`date +%Y%m%d`
262 updDate=0 ; test -f $updFile && updDate=`cat $updFile`
263 while [ $today -gt $updDate ] ; do
264 nCount=`expr $nCount + 1`
265 if [ $nCount -gt 40 ] ; then
266 echo " waiting too long (nCount=$nCount) for updated code"
267 echo " today=$today , updDate=$updDate "
268 ls -l $updFile
269 exit
270 fi
271 sleep 60
272 updDate=0 ; test -f $updFile && updDate=`cat $updFile`
273 done
274 ls -l $updFile | tee -a $tdir/output_$tt
275 echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt
276 #-----------------------------
277 if test -d MITgcm_today -a -d $new_dir ; then
278 echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt
279 cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt
280 else
281 if test -d MITgcm_today ; then
282 echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt
283 else
284 echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt
285 fi
286 continue
287 fi
288 echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt
289 cd $tdir/$new_dir
290 retVal=$?
291 ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt
292 if test -d verification ; then
293 echo " check: dir verification exist" | tee -a $tdir/output_$tt
294 else
295 echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt
296 continue
297 fi
298 if test "x$addExp" != x ; then
299 echo -n " make a local copy of $git_other ..." | tee -a $tdir/output_$tt
300 rsync -a $tdir/$git_other/ $git_other --exclude '.git'
301 echo " done" | tee -a $tdir/output_$tt
302 fi
303 #-- add additional experience from $git_other
304 for exp2add in $addExp ; do
305 echo " add link: $exp2add (from $git_other )" | tee -a $tdir/output_$tt
306 ( cd verification ; ln -s ../$git_other/$exp2add . )
307 if test $exp2add = 'global_oce_cs32' ; then
308 echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt
309 ( cd ${git_other}/${exp2add}
310 ln -s ../../../other_input/core2_cnyf . )
311 fi
312 #if test $exp2add = 'shelfice_remeshing' ; then
313 # echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
314 # ( cd verification/${exp2add}
315 # ln -s ../../../other_input/remeshing_code extra_code )
316 #fi
317 done
318 fi
319 else
320 cd $tdir/MITgcm_today
321 fi
322 cd verification
323
324 #-- set the testreport command:
325 comm="./testreport"
326 if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then
327 comm="$comm -adm"
328 elif test $typ = 'oad' ; then
329 comm="$comm -oad"
330 elif test $typ = 'tlm' ; then
331 comm="$comm -tlm"
332 elif test $typ = 'mth' -o $typ = 'mp2' ; then
333 export GOMP_STACKSIZE=400m
334 export OMP_NUM_THREADS=2
335 comm="$comm -mth"
336 else
337 comm="$comm -md cyrus-makedepend"
338 fi
339 comm="$comm -odir $outDir -a jm_c@mitgcm.org"
340 #-- set the optfile (+ mpi & match-precision)
341 MPI=0
342 case $typ in
343 'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;;
344 'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel"
345 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
346 'ifc') comm="$comm -devel"
347 OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
348 'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
349 'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=8
350 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
351 *) OPTFILE= ;;
352 esac
353 #-- set MPI command:
354 if test $MPI != 0 ; then
355 if test $typ = 'mp2' ; then MPI=3 ; fi
356 if test $typ = 'mpa' ; then
357 EXE="mpirun -np TR_NPROC ./mitgcmuv_ad"
358 else
359 EXE="mpirun -np TR_NPROC ./mitgcmuv"
360 fi
361 fi
362
363 #-- set specific Env Vars:
364 if test $typ = 'oad' ; then
365 #- for some reasons, "source ScriptFile | tee -a LogFile"
366 # does run the script but does not keep the env-var settings
367 source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt
368 fi
369 if test $typ = 'ifc' ; then
370 source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64
371 fi
372 if test $typ = 'pgi' ; then
373 #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20'
374 export PGI=/srv/software/pgi/pgi-10.9
375 export PATH="$PATH:$PGI/linux86-64/10.9/bin"
376 export LM_LICENSE_FILE=$PGI/license.dat
377 fi
378
379 if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then
380 #-- cleaning:
381 echo "======================"
382 echo "Cleaning test directories:" | tee -a $tdir/output_$tt
383 cmdCLN="./testreport -clean"
384 echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
385 $cmdCLN >> $tdir/output_$tt 2>&1
386 echo "======================"
387 echo "" | tee -a $tdir/output_$tt
388 fi
389
390 #-- run the testreport command:
391 echo -n "Running testreport using:" | tee -a $tdir/output_$tt
392 if test "x$OPTFILE" != x ; then
393 comm="$comm -of=$OPTFILE"
394 fi
395 if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt
396 else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt
397 comm="$comm -MPI $MPI -command \"\$EXE\""
398 fi
399 if test "x$option" != x ; then comm="$comm $option" ; fi
400 #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
401 echo " \"eval $comm\"" | tee -a $tdir/output_$tt
402 echo "======================"
403 eval $comm >> $tdir/output_$tt 2>&1
404 sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt
405 echo "" | tee -a $tdir/output_$tt
406
407 #-- also test restart (test 2+2=4)
408 if test $tt != $typ
409 then
410 echo "testing restart using:" | tee -a $tdir/output_$tt
411 comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org"
412 if test $MPI = 0 ; then
413 echo " \"$comm\"" | tee -a $tdir/output_$tt
414 echo "======================"
415 $comm >> $tdir/output_$tt 2>&1
416 else
417 echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt
418 echo "======================"
419 $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1
420 fi
421 echo ; cat tst_2+2_out.txt
422 echo
423 fi
424 export OMP_NUM_THREADS=1
425
426 if test $sepDir = 0 ; then
427 #-- cleaning:
428 echo "======================"
429 echo "Cleaning test directories:" | tee -a $tdir/output_$tt
430 if test $tt != $typ ; then
431 cmdCLN="../tools/do_tst_2+2 -clean"
432 echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt
433 $cmdCLN >> $tdir/output_$tt 2>&1
434 fi
435 if test $tt != $last_Tst ; then
436 cmdCLN="./testreport -clean"
437 echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
438 $cmdCLN >> $tdir/output_$tt 2>&1
439 fi
440 echo "======================"
441 echo
442 fi
443 cd $tdir
444
445 done

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