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Revision 1.5 - (show annotations) (download)
Mon Sep 16 23:38:47 2019 UTC (5 years, 10 months ago) by jmc
Branch: MAIN
Changes since 1.4: +4 -4 lines
update testing script on villon (new Ubuntu testing platform)
 + tie-up batsi and baudelaire testing script

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/ref_machine/test_batsi,v 1.4 2019/08/28 00:13:47 jmc Exp $
4
5 # Test script for MITgcm that should work on most of the x86_64 Linux machines.
6
7 tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi
8 if test $tst_grp != 'a' -a $tst_grp != 'b' ; then
9 echo "missing or invalid argument (expect: 'a' or 'b') ==> exit"
10 exit 1
11 fi
12
13 #- defaults
14 #export PATH="$PATH:/usr/local/bin"
15 if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
16 #- to get case insensitive "ls" (and order of tested experiments)
17 export LC_ALL="en_US.UTF-8"
18 # Turn off stack limit for FIZHI & AD-tests
19 ulimit -s unlimited
20 # MPI test (for now, only with gfortran)
21 source $HOME/bin/openmpi.sh
22
23 #- method to access CVS:
24 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack'
25 # cmdCVS='cvs -d /u/gcmpack'
26 # export CVS_RSH=ssh
27 # cmdCVS='cvs -q -d :ext:jmc@mitgcm.org:/u/gcmpack'
28
29 #- which GitHub repository to use and how to access it:
30 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
31 #git_repo='altMITgcm'; #git_code='MITgcm66h'
32 #--
33 git_repo="https://github.com/$git_repo"
34 #git_repo="git://github.com/$git_repo"
35 #git_repo="git@github.com:$git_repo"
36
37 #-------------------------------------------------------------------
38 # checkOut=3 : clone from GitHub and make a new copy (if sepDir)
39 # =2 : update (git pull) repo and make a new copy code (switch to 3 if no repo)
40 # =1 : skip update but use a new copy (if sepDir)
41 # =0 : use existing test code ( switch to 1 if missing test code )
42 dInWeek=`date +%a`
43
44 dNam=`hostname -s | tr '[:upper:]' '[:lower:]'`
45 TESTDIR="$HOME/test_${dNam}"
46 outDir=$dNam
47 MC=11
48 #TESTDIR="/scratch/jmc/test_${dNam}"
49 #outDir="${dNam}-${tst_grp}"
50 #MC=13
51 sepDir=1
52 option=
53
54 if test $tst_grp = 'a' ; then
55 checkOut=2
56 #tst_list='g7a mpa mth mp2+rs mpi oad'
57 tst_list='mpa adm g7a mpi mth+rs gfo+rs g77'
58 #tst_list="$tst_list oad"
59 else
60 checkOut=1
61 tst_list='adm g77 gfo+rs ifc'
62 if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi
63 fi
64 echo " test: $outDir ; list='$tst_list'"
65
66 #option="-nc" ; checkOut=0
67 #option="-q" ; checkOut=0
68
69 TODAY=`date +%d`
70 tmpFil="/tmp/"`basename $0`".$$"
71 tdir=$TESTDIR
72 updFile='updated_code' ; today=`date +%Y%m%d`
73
74 if [ $checkOut -le 1 ] ; then
75 if test -e $tdir/MITgcm_today/doc ; then
76 echo $tdir/MITgcm_today/doc 'exist'
77 else
78 echo -n $tdir/MITgcm_today 'missing ; '
79 checkOut=2
80 echo "will make a new copy ( checkOut=$checkOut )"
81 fi
82 fi
83
84 if [ $checkOut -ge 2 ] ; then
85 #---- cleaning:
86 if test -e $tdir ; then
87 #- remove date/lock-file:
88 if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi
89 echo -n "Removing working copy: $tdir/MITgcm_today ..."
90 test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today
91 else
92 echo -n "Creating a working dir: $tdir ..."
93 mkdir $tdir
94 fi
95 echo " done"
96 cd $tdir
97
98 #---- Making a new clone or updating existing one:
99 if [ $checkOut -eq 2 ] ; then
100 if test -e $git_code/.git/config ; then
101 echo $git_code/.git/config 'exist'
102 else
103 echo -n $git_code/.git/config 'missing ; '
104 checkOut=3
105 echo "will get new clone ( checkOut=$checkOut )"
106 fi
107 if test -e $git_other/.git/config ; then
108 echo $git_other/.git/config 'exist'
109 else
110 echo -n $git_other/.git/config 'missing ; '
111 checkOut=3
112 echo "will get new clone ( checkOut=$checkOut )"
113 fi
114 fi
115 if [ $checkOut -eq 3 ] ; then
116 test -e $git_code && rm -rf $git_code
117 echo "Make a clone of $git_code from repo: $git_repo ..."
118 git clone $git_repo/${git_code}.git 2> $tmpFil
119 retVal=$?
120 if test $retVal = 0 ; then
121 echo ' --> done!'
122 rm -f $tmpFil
123 else
124 echo " Error: 'git clone' returned: $retVal"
125 cat $tmpFil
126 rm -f $tmpFil
127 exit 2
128 fi
129 test -e $git_other && rm -rf $git_other
130 echo "Make a clone of $git_other from repo: $git_repo ..."
131 git clone $git_repo/${git_other}.git 2> $tmpFil
132 retVal=$?
133 if test $retVal = 0 ; then
134 echo ' --> done!'
135 rm -f $tmpFil
136 else
137 echo " Error: 'git clone' returned: $retVal"
138 cat $tmpFil
139 rm -f $tmpFil
140 exit 2
141 fi
142 else
143 echo "Updating current clone ( $git_code ) ..."
144 ( cd $git_code ; git pull )
145 retVal=$?
146 if test $retVal = 0 ; then
147 echo ' --> done!'
148 else
149 echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
150 exit 3
151 fi
152 ( cd $git_code ; git checkout master -- . )
153 echo "Updating current clone ( $git_other ) ..."
154 ( cd $git_other ; git pull )
155 retVal=$?
156 if test $retVal = 0 ; then
157 echo ' --> done!'
158 else
159 echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
160 exit 3
161 fi
162 ( cd $git_other ; git checkout master -- . )
163 fi
164 #---- making a new working copy: MITgcm_today
165 rsync -a $git_code/ MITgcm_today --exclude '.git'
166 if test $sepDir = 0 ; then
167 echo -n " make a local copy of $git_other in MITgcm_today ..." | tee -a $tdir/output_$tt
168 ( cd MITgcm_today
169 rsync -a ../$git_other/ $git_other --exclude '.git' )
170 echo " done" | tee -a $tdir/output_$tt
171 fi
172 #---- updating "other_input" dir
173 if test -d other_input ; then
174 list_dirs=`(cd other_input ; ls 2> /dev/null )`
175 echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:"
176 for exd in $list_dirs ; do
177 if test -d other_input/$exd/CVS ; then echo " $exd"
178 ( cd other_input/$exd ; $cmdCVS update -P -d )
179 fi
180 done
181 echo " <-- update of 'other_input' dirs done"
182 fi
183 #---- update date/lock-file:
184 echo $today > $updFile ; sleep 2 ; ls -l $updFile
185 else
186 cd $tdir
187 fi
188
189 #------------------------------------------------------------------------
190
191 firstTst=`echo $tst_list | awk '{print $1}'`
192 last_Tst=`echo $tst_list | awk '{print $NF}'`
193 for tt in $tst_list
194 do
195
196 echo "================================================================"
197 typ=`echo $tt | sed 's/+rs//'`
198 #- define list of additional experiences to test:
199 addExp=''
200 if test $typ = 'mpi' ; then
201 addExp="offline_cheapaml atm_gray atm_strato"
202 fi
203 if test $typ = 'gfo' -o $typ = 'ifc' -o $typ = 'mpa' ; then
204 addExp="$addExp global_oce_biogeo_bling"
205 fi
206 if test $typ = 'gfo' -o $typ = 'ifc' ; then
207 addExp="$addExp shelfice_remeshing"
208 fi
209 if test $typ = 'mpi' ; then
210 addExp="$addExp global_ocean.gm_k3d"
211 addExp="$addExp global_oce_cs32"
212 fi
213 #- check day and time:
214 curDay=`date +%d` ; curHour=`date +%H`
215 if [ $curDay -ne $TODAY ] ; then
216 date ; echo "day is over => skip test $typ"
217 continue
218 fi
219 if [ $curHour -ge 18 ] ; then
220 date ; echo "too late to run test $typ"
221 continue
222 fi
223 if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then
224 echo "using option='$option' prevent multi-tests => skip test $typ"
225 continue
226 fi
227 #- clean-up old output files
228 if test -d $tdir/prev ; then
229 mv -f $tdir/output_${typ}* $tdir/prev
230 else
231 rm -f $tdir/output_${typ}*
232 fi
233 touch $tdir/output_$tt
234 echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt
235 date >> $tdir/output_$tt
236 echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt
237 if test $sepDir = 1 ; then
238 new_dir="MITgcm_$typ"
239 reUse=0 ; if [ $checkOut -le 0 ] ; then reUse=1 ; fi
240 if test -d $new_dir/doc -a $reUse = 1 ; then
241 cd $tdir/$new_dir
242 if test $tt != $typ ; then
243 ( cd verification ; ../tools/do_tst_2+2 -clean )
244 fi
245 else
246 if test -d prev ; then
247 #-- save previous summary:
248 oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1`
249 if test "x$oldS" != x ; then
250 cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ
251 touch -r $oldS prev/tr_out.$typ
252 fi
253 if test $tt != $typ ; then
254 oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1`
255 if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi
256 fi
257 fi
258 echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt
259 test -e $new_dir && rm -rf $new_dir
260 mkdir $new_dir
261 #- before making a copy, check that code has been updated
262 nCount=0; today=`date +%Y%m%d`
263 updDate=0 ; test -f $updFile && updDate=`cat $updFile`
264 while [ $today -gt $updDate ] ; do
265 nCount=`expr $nCount + 1`
266 if [ $nCount -gt 40 ] ; then
267 echo " waiting too long (nCount=$nCount) for updated code"
268 echo " today=$today , updDate=$updDate "
269 ls -l $updFile
270 exit
271 fi
272 sleep 60
273 updDate=0 ; test -f $updFile && updDate=`cat $updFile`
274 done
275 ls -l $updFile | tee -a $tdir/output_$tt
276 echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt
277 #-----------------------------
278 if test -d MITgcm_today -a -d $new_dir ; then
279 echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt
280 cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt
281 else
282 if test -d MITgcm_today ; then
283 echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt
284 else
285 echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt
286 fi
287 continue
288 fi
289 echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt
290 cd $tdir/$new_dir
291 retVal=$?
292 ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt
293 if test -d verification ; then
294 echo " check: dir verification exist" | tee -a $tdir/output_$tt
295 else
296 echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt
297 continue
298 fi
299 if test "x$addExp" != x ; then
300 echo -n " make a local copy of $git_other ..." | tee -a $tdir/output_$tt
301 rsync -a $tdir/$git_other/ $git_other --exclude '.git'
302 echo " done" | tee -a $tdir/output_$tt
303 fi
304 #-- add additional experience from $git_other
305 for exp2add in $addExp ; do
306 echo " add link: $exp2add (from $git_other )" | tee -a $tdir/output_$tt
307 ( cd verification ; ln -s ../$git_other/$exp2add . )
308 if test $exp2add = 'global_oce_cs32' ; then
309 echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt
310 ( cd verification/${exp2add}
311 ln -s ../../../other_input/core2_cnyf . )
312 fi
313 #if test $exp2add = 'shelfice_remeshing' ; then
314 # echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt
315 # ( cd verification/${exp2add}
316 # ln -s ../../../other_input/remeshing_code extra_code )
317 #fi
318 done
319 fi
320 else
321 cd $tdir/MITgcm_today
322 fi
323 cd verification
324
325 #-- set the testreport command:
326 comm="./testreport"
327 if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then
328 comm="$comm -adm"
329 elif test $typ = 'oad' ; then
330 comm="$comm -oad"
331 elif test $typ = 'tlm' ; then
332 comm="$comm -tlm"
333 elif test $typ = 'mth' -o $typ = 'mp2' ; then
334 export GOMP_STACKSIZE=400m
335 export OMP_NUM_THREADS=2
336 comm="$comm -mth"
337 else
338 comm="$comm -md cyrus-makedepend"
339 fi
340 comm="$comm -odir $outDir -a jm_c@mitgcm.org"
341 #-- set the optfile (+ mpi & match-precision)
342 MPI=0
343 case $typ in
344 'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;;
345 'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel"
346 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
347 'ifc') comm="$comm -devel"
348 OPTFILE='../tools/build_options/linux_amd64_ifort11' ;;
349 'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;;
350 'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=8
351 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;;
352 *) OPTFILE= ;;
353 esac
354 #-- set MPI command:
355 if test $MPI != 0 ; then
356 if test $typ = 'mp2' ; then MPI=3 ; fi
357 if test $typ = 'mpa' ; then
358 EXE="mpirun -np TR_NPROC ./mitgcmuv_ad"
359 else
360 EXE="mpirun -np TR_NPROC ./mitgcmuv"
361 fi
362 fi
363
364 #-- set specific Env Vars:
365 if test $typ = 'oad' ; then
366 #- for some reasons, "source ScriptFile | tee -a LogFile"
367 # does run the script but does not keep the env-var settings
368 source $HOME/mitgcm/bin/setenv_OpenAD.sh >> $tdir/output_$tt
369 fi
370 if test $typ = 'ifc' ; then
371 source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64
372 fi
373 if test $typ = 'pgi' ; then
374 #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20'
375 export PGI=/srv/software/pgi/pgi-10.9
376 export PATH="$PATH:$PGI/linux86-64/10.9/bin"
377 export LM_LICENSE_FILE=$PGI/license.dat
378 fi
379
380 if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut = 0 ; then
381 #-- cleaning:
382 echo "======================"
383 echo "Cleaning test directories:" | tee -a $tdir/output_$tt
384 cmdCLN="./testreport -clean"
385 echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
386 $cmdCLN >> $tdir/output_$tt 2>&1
387 echo "======================"
388 echo "" | tee -a $tdir/output_$tt
389 fi
390
391 #-- run the testreport command:
392 echo -n "Running testreport using:" | tee -a $tdir/output_$tt
393 if test "x$OPTFILE" != x ; then
394 comm="$comm -of=$OPTFILE"
395 fi
396 if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt
397 else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt
398 comm="$comm -MPI $MPI -command \"\$EXE\""
399 fi
400 if test "x$option" != x ; then comm="$comm $option" ; fi
401 #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi
402 echo " \"eval $comm\"" | tee -a $tdir/output_$tt
403 echo "======================"
404 eval $comm >> $tdir/output_$tt 2>&1
405 sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt
406 echo "" | tee -a $tdir/output_$tt
407
408 #-- also test restart (test 2+2=4)
409 if test $tt != $typ
410 then
411 echo "testing restart using:" | tee -a $tdir/output_$tt
412 comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org"
413 if test $MPI = 0 ; then
414 echo " \"$comm\"" | tee -a $tdir/output_$tt
415 echo "======================"
416 $comm >> $tdir/output_$tt 2>&1
417 else
418 echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt
419 echo "======================"
420 $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1
421 fi
422 echo ; cat tst_2+2_out.txt
423 echo
424 fi
425 export OMP_NUM_THREADS=1
426
427 if test $sepDir = 0 ; then
428 #-- cleaning:
429 echo "======================"
430 echo "Cleaning test directories:" | tee -a $tdir/output_$tt
431 if test $tt != $typ ; then
432 cmdCLN="../tools/do_tst_2+2 -clean"
433 echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt
434 $cmdCLN >> $tdir/output_$tt 2>&1
435 fi
436 if test $tt != $last_Tst ; then
437 cmdCLN="./testreport -clean"
438 echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt
439 $cmdCLN >> $tdir/output_$tt 2>&1
440 fi
441 echo "======================"
442 echo
443 fi
444 cd $tdir
445
446 done

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