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mlosch |
1.1 |
#!/bin/bash -e |
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# new script for running testreport on ollie.awi.de |
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mlosch |
1.3 |
# - compile and run on compute nodes |
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# - use ssh to call mpack command from the head node ollie0 |
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mlosch |
1.7 |
#$Header: /u/gcmpack/MITgcm_contrib/test_scripts/ollie/mitgcmtestreport_ifort,v 1.6 2018/02/08 15:13:00 mlosch Exp $ |
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mlosch |
1.2 |
#$Name: $ |
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mlosch |
1.1 |
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# needed for cron-job |
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source /usr/Modules/3.2.10/init/bash |
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source /etc/profile.d/cray_pe.sh |
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source /etc/profile.d/AWI.sh |
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# |
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module purge |
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module load intel.compiler |
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module load intel.mpi |
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mlosch |
1.5 |
module load netcdf |
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#export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}: |
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mlosch |
1.1 |
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mlosch |
1.5 |
export MPI_ROOT=${I_MPI_ROOT} |
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#(dirname $(dirname `which mpiifort`)) |
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mlosch |
1.1 |
export MPI_INC_DIR=${MPI_ROOT}/include64 |
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mlosch |
1.5 |
# there is no slurm module anymore and this is the current recommendation to |
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# have sbatch in your path (rather than running /etc/profile.d./slurm.sh) |
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export PATH=${PATH}:/global/opt/slurm/default/bin |
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mlosch |
1.1 |
dNam='ollie' |
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TST_DIR="/work/ollie/mlosch/test_$dNam" |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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umask 0022 |
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sfx='ifort' |
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RUNIT="runit_"$sfx |
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mlosch |
1.2 |
OPTFILE=../tools/build_options/linux_ia64_${sfx}_ollie |
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mlosch |
1.1 |
options="-MPI 6" |
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mlosch |
1.2 |
options="$options -odir ${dNam}-i" |
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mlosch |
1.1 |
options="$options -j 6" |
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#options="$options -t global_ocean.90x40x15" |
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mlosch |
1.3 |
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mlosch |
1.6 |
#EXE='mpiexec.hydra -bootstrap slurm -n TR_NPROC ./mitgcmuv' |
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mlosch |
1.1 |
#EXE='srun --mpi=pmi2 -n TR_NPROC ./mitgcmuv' |
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mlosch |
1.6 |
EXE='srun -n TR_NPROC ./mitgcmuv' |
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mlosch |
1.1 |
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if [ -e $TST_DIR ]; then |
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echo "$TST_DIR exists" |
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else |
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mkdir $TST_DIR |
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fi |
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cd $TST_DIR |
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HERE=$TST_DIR/output |
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if [ -e $HERE ]; then |
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echo "$HERE" |
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else |
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mkdir $HERE |
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fi |
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mlosch |
1.2 |
OUTFILE=$HERE/slurm_${sfx}.out |
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mlosch |
1.1 |
MYOUTPUT=$HERE/out_$sfx |
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if [ -e $MYOUTPUT ]; then |
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rm -rf $MYOUTPUT |
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fi |
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if [ -e $OUTFILE ]; then |
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rm -r $OUTFILE |
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fi |
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mlosch |
1.7 |
gcmDIR="MITgcm_${sfx}" |
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mlosch |
1.6 |
git_repo='MITgcm' |
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git_code='MITgcm' |
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# checkOut determines how much checking out is being done |
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# checkOut = 3: new clone from GitHub and make a new copy |
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# checkOut = 2: update (git pull) existing repo and make a new copy |
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# checkOut = 1: skip update |
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# checkOut = 0: use existing test code (if available otherwise switch to 1) |
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checkOut=2 |
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tdir=${TST_DIR} |
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today=`date +%Y%m%d` |
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TODAY=`date +%d` |
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#tmpFil="/tmp/"`basename $0`".$$" |
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tmpFil=$TST_DIR/error.out |
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if [ $checkOut -le 1 ] ; then |
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if test -e $TST_DIR/${gcmDIR}/doc ; then |
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echo $TST_DIR/${gcmDIR}/doc 'exist' |
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else |
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echo -n $TST_DIR/${gcmDIR} 'missing ; ' |
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checkOut=2 |
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echo "will make a new copy ( checkOut=$checkOut )" |
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mlosch |
1.1 |
fi |
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mlosch |
1.6 |
fi |
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if [ $checkOut -ge 2 ] ; then |
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#---- cleaning: |
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cd $TST_DIR |
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#---- Make a new clone or update existing one: |
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if test -e ${gcmDIR}/.git/config ; then |
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echo "${gcmDIR}/.git/config exist" |
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else |
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echo -n "${gcmDIR}/.git/config 'missing" |
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checkOut=3 |
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echo "will get new clone ( checkOut=$checkOut )" |
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fi |
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if [ $checkOut -eq 3 ] ; then |
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echo -n "Removing old clone: $TST_DIR/${gcmDIR} ..." |
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test -e $TST_DIR/${gcmDIR} && rm -rf $TST_DIR/${gcmDIR} |
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echo " done" |
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echo -n "Make a new clone of $git_code from repo: $git_repo ..." |
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git clone https://github.com/$git_repo/${git_code}.git ${gcmDIR} 2> $tmpFil |
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retVal=$? |
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if test $retVal = 0 ; then |
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echo ' --> done!' |
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rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil |
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rm -f $tmpFil |
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exit 2 |
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fi |
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else |
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echo "Updating current clone ( $git_code ) ..." |
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( cd ${gcmDIR}; git checkout master ; git pull ) |
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echo ' --> done!' |
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mlosch |
1.1 |
fi |
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mlosch |
1.6 |
else |
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cd $TST_DIR |
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mlosch |
1.1 |
fi |
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mlosch |
1.7 |
cd ${TST_DIR}/${gcmDIR}/verification |
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mlosch |
1.1 |
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mlosch |
1.4 |
cwd=\`pwd\` |
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mlosch |
1.3 |
SENDCMD="ssh ollie0 ${TST_DIR}/${gcmDIR}/tools/mpack-1.6/mpack" |
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runtestreport="./testreport $options -of $OPTFILE -command \"${EXE}\" -send \"${SENDCMD}\" -sd ${cwd}" |
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mlosch |
1.1 |
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if [ ! -e $MYOUTPUT ] |
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then |
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touch $MYOUTPUT |
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fi |
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mlosch |
1.2 |
# echo "running testreport like this:" |
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# echo ${runtestreport} -norun |
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# eval "${runtestreport} -norun >> $MYOUTPUT 2>&1" |
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mlosch |
1.1 |
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# create batch script |
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# |
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mlosch |
1.2 |
JOBNAME=tst$sfx |
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mlosch |
1.1 |
echo "creating batch script $HERE/$RUNIT" |
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cat << EOF >| $HERE/$RUNIT |
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mlosch |
1.3 |
#!/bin/bash |
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mlosch |
1.1 |
#SBATCH --job-name=${JOBNAME} |
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#SBATCH -o ${OUTFILE} |
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mlosch |
1.3 |
#SBATCH --time=6:00:00 |
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mlosch |
1.1 |
#SBATCH --ntasks=6 |
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mlosch |
1.3 |
# still need this to be able to run a few experiments: |
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# cfc_example, fizhi, tutorial_deep_convection |
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ulimit -s unlimited |
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mlosch |
1.1 |
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mlosch |
1.6 |
# binds OpenMP task to given cores |
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export OMP_PROC_BIND=TRUE |
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# for debugging |
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export FLEXLM_DIAGNOSTICS=2 |
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export FNP_IP_ENV=1 |
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export LM_A_CONN_TIMEOUT=99 |
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mlosch |
1.1 |
cd \${SLURM_SUBMIT_DIR} |
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mlosch |
1.3 |
cwd=`pwd` |
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echo "running testreport like this in \${cwd}:" |
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echo "${runtestreport} -devel -match 10" |
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mlosch |
1.6 |
${runtestreport} -devel -match 10 -a jm_c@mitgcm.org >> $MYOUTPUT 2>&1 |
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mlosch |
1.3 |
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echo "running testreport like this in \${cwd}:" |
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echo "./testreport -clean" |
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./testreport -clean |
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echo "running testreport like this in \${cwd}:" |
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echo "${runtestreport} -fast -match 10" |
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mlosch |
1.6 |
${runtestreport} -fast -match 10 -a jm_c@mitgcm.org >> $MYOUTPUT 2>&1 |
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mlosch |
1.1 |
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EOF |
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chmod a+x $HERE/$RUNIT |
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echo " " >> $MYOUTPUT |
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echo "***********************************************************" >> $MYOUTPUT |
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echo "Submitting this job script:" >> $MYOUTPUT |
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echo "***********************************************************" >> $MYOUTPUT |
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cat $HERE/$RUNIT >> $MYOUTPUT |
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echo "***********************************************************" >> $MYOUTPUT |
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echo "end of job script" >> $MYOUTPUT |
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echo "***********************************************************" >> $MYOUTPUT |
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echo " " >> $MYOUTPUT |
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mlosch |
1.6 |
echo "sbatch $HERE/$RUNIT" |
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mlosch |
1.1 |
sbatch $HERE/$RUNIT |
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mlosch |
1.3 |
# # keep looking for the job in the job queues and wait until it has disappeared |
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# jobruns=somedummy |
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# while [ "${jobruns}"x != x ] |
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# do |
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# sleep 200 |
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# jobruns=`squeue --noheader -u mlosch | grep "$JOBNAME" | awk '{print $1}'` |
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# echo "waiting for job ${jobruns%% *} ($JOBNAME) to complete" |
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# currentexp=`grep Experiment $MYOUTPUT | tail -1` |
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# echo "currently running $currentexp" |
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# done |
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# # workaround for mailing the stuff |
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# echo "mail the stuff" |
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# MPACKCMD=../tools/mpack-1.6/mpack |
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# fn=`ls -dtr tr_$dNam* | grep -v tar.gz | tail -1` |
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# echo "fname ${fn}" |
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# tar cf - $fn | gzip > "${fn}.tar.gz" |
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mlosch |
1.6 |
# $MPACKCMD -s MITgcm-test -m 3555000 ${fn}.tar.gz jm_c@mitgcm.org |
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mlosch |
1.3 |
# sleep 2 |
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# rm -rf "${fn}.tar.gz" |
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mlosch |
1.1 |
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echo "end of mitgcmtestreport" |
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