| 1 |
#!/bin/bash -e |
| 2 |
# new script for running testreport on ollie.awi.de |
| 3 |
# - compile and run on compute nodes |
| 4 |
# - use ssh to call mpack command from the head node ollie0 |
| 5 |
#$Header: /u/gcmpack/MITgcm_contrib/test_scripts/ollie/mitgcmtestreport_cray,v 1.3 2016/06/21 09:43:58 mlosch Exp $ |
| 6 |
#$Name: $ |
| 7 |
|
| 8 |
# needed for cron-job |
| 9 |
source /usr/Modules/3.2.10/init/bash |
| 10 |
source /etc/profile.d/cray_pe.sh |
| 11 |
source /etc/profile.d/AWI.sh |
| 12 |
# |
| 13 |
module purge |
| 14 |
module load slurm |
| 15 |
module load craype-broadwell |
| 16 |
module load PrgEnv-cray/1.0.0 |
| 17 |
module unload cudatoolkit |
| 18 |
module swap mvapich2_cce cray-impi |
| 19 |
module load intel/impi-5.1.3 |
| 20 |
export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}: |
| 21 |
|
| 22 |
dNam='ollie' |
| 23 |
TST_DIR="/work/ollie/mlosch/test_$dNam" |
| 24 |
echo "start from TST_DIR='$TST_DIR' at: "`date` |
| 25 |
|
| 26 |
umask 0022 |
| 27 |
|
| 28 |
sfx='cray' |
| 29 |
RUNIT="runit_"$sfx |
| 30 |
|
| 31 |
OPTFILE=../tools/build_options/linux_ia64_${sfx}_ollie |
| 32 |
options="-MPI 6" |
| 33 |
options="$options -odir ${dNam}-c" |
| 34 |
p#options="$options -j 6" |
| 35 |
#options="$options -t global_ocean.cs32x15" |
| 36 |
|
| 37 |
#EXE='mpiexec.hydra -bootstrap slurm -n TR_NPROC ./mitgcmuv' |
| 38 |
EXE='srun --mpi=pmi2 -n TR_NPROC ./mitgcmuv' |
| 39 |
|
| 40 |
if [ -e $TST_DIR ]; then |
| 41 |
echo "$TST_DIR exists" |
| 42 |
else |
| 43 |
mkdir $TST_DIR |
| 44 |
fi |
| 45 |
cd $TST_DIR |
| 46 |
HERE=$TST_DIR/output |
| 47 |
if [ -e $HERE ]; then |
| 48 |
echo "$HERE" |
| 49 |
else |
| 50 |
mkdir $HERE |
| 51 |
fi |
| 52 |
OUTFILE=$HERE/slurm_${sfx}.out |
| 53 |
MYOUTPUT=$HERE/out_$sfx |
| 54 |
if [ -e $MYOUTPUT ]; then |
| 55 |
rm -rf $MYOUTPUT |
| 56 |
fi |
| 57 |
if [ -e $OUTFILE ]; then |
| 58 |
rm -r $OUTFILE |
| 59 |
fi |
| 60 |
gcmDIR="MITgcm_$sfx" |
| 61 |
checkOut=1 |
| 62 |
if [ $checkOut -eq 1 ] ; then |
| 63 |
if test -d $gcmDIR/CVS ; then |
| 64 |
/bin/rm -rf $gcmDIR/verification/??_${dNam}_????????_? |
| 65 |
( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
| 66 |
echo "cvs update of dir $gcmDIR :" |
| 67 |
( cd $gcmDIR ; cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack update -P -d ) 2>&1 |
| 68 |
RETVAL=$? |
| 69 |
if test "x$RETVAL" != x0 ; then |
| 70 |
echo "cvs update on '"`hostname`"' failed (return val=$RETVAL) => exit" |
| 71 |
exit |
| 72 |
fi |
| 73 |
else |
| 74 |
echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
| 75 |
checkOut=2 |
| 76 |
fi |
| 77 |
fi |
| 78 |
if [ $checkOut -eq 2 ] ; then |
| 79 |
if test -e $gcmDIR ; then |
| 80 |
rm -rf $gcmDIR |
| 81 |
fi |
| 82 |
# cvs co MITgcm |
| 83 |
cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d $gcmDIR MITgcm > /dev/null 2>&1 |
| 84 |
/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
| 85 |
/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
| 86 |
fi |
| 87 |
|
| 88 |
cd ${gcmDIR}/verification |
| 89 |
|
| 90 |
cwd=`pwd` |
| 91 |
SENDCMD="ssh ollie0 ${TST_DIR}/${gcmDIR}/tools/mpack-1.6/mpack" |
| 92 |
runtestreport="./testreport $options -of $OPTFILE -command \"${EXE}\" -send \"${SENDCMD}\" -sd ${cwd}" |
| 93 |
|
| 94 |
if [ ! -e $MYOUTPUT ] |
| 95 |
then |
| 96 |
touch $MYOUTPUT |
| 97 |
fi |
| 98 |
|
| 99 |
# echo "running testreport like this:" |
| 100 |
# echo ${runtestreport} -norun |
| 101 |
# eval "${runtestreport} -norun >> $MYOUTPUT 2>&1" |
| 102 |
|
| 103 |
# create batch script |
| 104 |
# |
| 105 |
JOBNAME=tst$sfx |
| 106 |
echo "creating batch script $HERE/$RUNIT" |
| 107 |
cat << EOF >| $HERE/$RUNIT |
| 108 |
#!/bin/bash |
| 109 |
#SBATCH --job-name=${JOBNAME} |
| 110 |
#SBATCH -o ${OUTFILE} |
| 111 |
#SBATCH --time=12:00:00 |
| 112 |
#SBATCH --ntasks=6 |
| 113 |
|
| 114 |
# still need this to be able to run a few experiments: |
| 115 |
# cfc_example, fizhi, tutorial_deep_convection |
| 116 |
ulimit -s unlimited |
| 117 |
|
| 118 |
cd \${SLURM_SUBMIT_DIR} |
| 119 |
|
| 120 |
cwd=`pwd` |
| 121 |
echo "running testreport like this in \${cwd}:" |
| 122 |
echo "${runtestreport} -devel -match 10" |
| 123 |
${runtestreport} -devel -match 10 -a jmc@mitgcm.org >> $MYOUTPUT 2>&1 |
| 124 |
|
| 125 |
echo "running testreport like this in \${cwd}:" |
| 126 |
echo "./testreport -clean" |
| 127 |
./testreport -clean |
| 128 |
|
| 129 |
echo "running testreport like this in \${cwd}:" |
| 130 |
echo "${runtestreport} -fast -match 10" |
| 131 |
${runtestreport} -fast -match 10 -a jmc@mitgcm.org >> $MYOUTPUT 2>&1 |
| 132 |
|
| 133 |
EOF |
| 134 |
|
| 135 |
chmod a+x $HERE/$RUNIT |
| 136 |
|
| 137 |
echo " " >> $MYOUTPUT |
| 138 |
echo "***********************************************************" >> $MYOUTPUT |
| 139 |
echo "Submitting this job script:" >> $MYOUTPUT |
| 140 |
echo "***********************************************************" >> $MYOUTPUT |
| 141 |
cat $HERE/$RUNIT >> $MYOUTPUT |
| 142 |
echo "***********************************************************" >> $MYOUTPUT |
| 143 |
echo "end of job script" >> $MYOUTPUT |
| 144 |
echo "***********************************************************" >> $MYOUTPUT |
| 145 |
echo " " >> $MYOUTPUT |
| 146 |
|
| 147 |
sbatch $HERE/$RUNIT |
| 148 |
|
| 149 |
# # keep looking for the job in the job queues and wait until it has disappeared |
| 150 |
# jobruns=somedummy |
| 151 |
# while [ "${jobruns}"x != x ] |
| 152 |
# do |
| 153 |
# sleep 200 |
| 154 |
# jobruns=`squeue --noheader -u mlosch | grep "$JOBNAME" | awk '{print $1}'` |
| 155 |
# echo "waiting for job ${jobruns%% *} ($JOBNAME) to complete" |
| 156 |
# currentexp=`grep Experiment $MYOUTPUT | tail -1` |
| 157 |
# echo "currently running $currentexp" |
| 158 |
# done |
| 159 |
|
| 160 |
# # workaround for mailing the stuff |
| 161 |
# echo "mail the stuff" |
| 162 |
|
| 163 |
# MPACKCMD=../tools/mpack-1.6/mpack |
| 164 |
# fn=`ls -dtr tr_$dNam* | grep -v tar.gz | tail -1` |
| 165 |
# echo "fname ${fn}" |
| 166 |
# tar cf - $fn | gzip > "${fn}.tar.gz" |
| 167 |
# $MPACKCMD -s MITgcm-test -m 3555000 ${fn}.tar.gz jmc@mitgcm.org |
| 168 |
# sleep 2 |
| 169 |
# rm -rf "${fn}.tar.gz" |
| 170 |
|
| 171 |
echo "end of mitgcmtestreport" |
Parent Directory
| 
Revision Log
| 
Revision Graph