/[MITgcm]/MITgcm_contrib/test_scripts/ollie/mitgcmtestreport_cray
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revision 1.2 by mlosch, Fri Jun 10 07:55:29 2016 UTC revision 1.6 by mlosch, Mon Aug 29 15:08:54 2016 UTC
# Line 1  Line 1 
1  #!/bin/bash -e  #!/bin/bash -e
2  # new script for running testreport on ollie.awi.de  # new script for running testreport on ollie.awi.de
3  # - split the testreport into 2 steps:  # - compile and run on compute nodes
4  # 1/ compiling on head node, with -norun option  # - use ssh to call mpack command from the head node ollie0
 # 2/ running on compute node (using SBATCH), with -runonly option  
5  #$Header$  #$Header$
6  #$Name$  #$Name$
7    
# Line 11  source /usr/Modules/3.2.10/init/bash Line 10  source /usr/Modules/3.2.10/init/bash
10  source /etc/profile.d/cray_pe.sh  source /etc/profile.d/cray_pe.sh
11  source /etc/profile.d/AWI.sh  source /etc/profile.d/AWI.sh
12  #  #
13    
14  module purge  module purge
15  module load slurm  module load slurm
16  module load craype-broadwell  module load craype-broadwell
17  module load PrgEnv-cray/1.0.0  module load PrgEnv-cray
18  module unload cudatoolkit  #export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}:
19  module swap mvapich2_cce cray-impi  # not sure why I have set these paths here again
20  module load intel/impi-5.1.3  export MPI_ROOT=$(dirname `echo $LD_LIBRARY_PATH  | awk -F: '{print $1}'`)
21  export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH}:  export MPI_INC_DIR=${MPI_ROOT}/include
22    
23    
24  dNam='ollie'  dNam='ollie'
25  TST_DIR="/work/ollie/mlosch/test_$dNam"  TST_DIR="/work/ollie/mlosch/test_$dNam"
# Line 32  RUNIT="runit_"$sfx Line 33  RUNIT="runit_"$sfx
33  OPTFILE=../tools/build_options/linux_ia64_${sfx}_ollie  OPTFILE=../tools/build_options/linux_ia64_${sfx}_ollie
34  options="-MPI 6"  options="-MPI 6"
35  options="$options -odir ${dNam}-c"  options="$options -odir ${dNam}-c"
 options="$options -devel"  
 #options="$options -j 2"  
36  #options="$options -j 6"  #options="$options -j 6"
37  #options="$options -t global_ocean.cs32x15 -q"  #options="$options -t global_ocean.cs32x15"
38    
39  #EXE='mpiexec.hydra -bootstrap slurm -n TR_NPROC ./mitgcmuv'  #EXE='mpiexec.hydra -bootstrap slurm -n TR_NPROC ./mitgcmuv'
40  EXE='srun --mpi=pmi2 -n TR_NPROC ./mitgcmuv'  EXE='srun --mpi=pmi2 -n TR_NPROC ./mitgcmuv'
41    
# Line 60  if [ -e $OUTFILE ]; then Line 60  if [ -e $OUTFILE ]; then
60    rm -r $OUTFILE    rm -r $OUTFILE
61  fi  fi
62  gcmDIR="MITgcm_$sfx"  gcmDIR="MITgcm_$sfx"
 #gcmDIR="MITgcm"  
63  checkOut=1  checkOut=1
64  if [ $checkOut -eq 1 ] ; then  if [ $checkOut -eq 1 ] ; then
65   if test -d $gcmDIR/CVS ; then   if test -d $gcmDIR/CVS ; then
# Line 90  fi Line 89  fi
89    
90  cd ${gcmDIR}/verification  cd ${gcmDIR}/verification
91    
92  runtestreport="./testreport $options -of $OPTFILE -command \"${EXE}\""  cwd=\`pwd\`
93    SENDCMD="ssh ollie0 ${TST_DIR}/${gcmDIR}/tools/mpack-1.6/mpack"
94    runtestreport="./testreport $options -of $OPTFILE -command \"${EXE}\" -send \"${SENDCMD}\" -sd ${cwd}"
95    
96  if [ ! -e $MYOUTPUT ]  if [ ! -e $MYOUTPUT ]
97      then      then
# Line 106  fi Line 107  fi
107  JOBNAME=tst$sfx  JOBNAME=tst$sfx
108  echo "creating batch script $HERE/$RUNIT"  echo "creating batch script $HERE/$RUNIT"
109  cat << EOF >| $HERE/$RUNIT  cat << EOF >| $HERE/$RUNIT
110  #!/bin/bash -x  #!/bin/bash
111  #SBATCH --job-name=${JOBNAME}  #SBATCH --job-name=${JOBNAME}
112  #SBATCH  -o ${OUTFILE}  #SBATCH  -o ${OUTFILE}
113  #SBATCH --time=6:00:00  #SBATCH --time=12:00:00
114  #SBATCH --ntasks=6  #SBATCH --ntasks=6
 #SBATCH  -p smp  
115    
116  ulimit -s 1048576  # still need this to be able to run a few experiments:
117    # cfc_example, fizhi, tutorial_deep_convection
118    ulimit -s unlimited
119    
120  cd \${SLURM_SUBMIT_DIR}  cd \${SLURM_SUBMIT_DIR}
121    
122  echo "running testreport like this:"  cwd=`pwd`
123  echo "${runtestreport} -runonly"  echo "running testreport like this in \${cwd}:"
124  #${runtestreport} -runonly -match 10 -a 'Martin.Losch@awi.de' >> $MYOUTPUT  echo "${runtestreport} -devel -match 10"
125  #${runtestreport} -runonly -match 10 -a 'jmc@mitcm.org' >> $MYOUTPUT  ${runtestreport} -devel -match 10 -a jmc@mitgcm.org >> $MYOUTPUT 2>&1
126  ${runtestreport} -match 10 >> $MYOUTPUT  
127    echo "running testreport like this in \${cwd}:"
128    echo "./testreport -clean"
129    ./testreport -clean
130    
131    echo "running testreport like this in \${cwd}:"
132    echo "${runtestreport} -fast -match 10"
133    ${runtestreport} -fast -match 10 -a jmc@mitgcm.org >> $MYOUTPUT 2>&1
134    
135  EOF  EOF
136    
# Line 139  echo " " >> $MYOUTPUT Line 148  echo " " >> $MYOUTPUT
148    
149  sbatch $HERE/$RUNIT  sbatch $HERE/$RUNIT
150    
151  # keep looking for the job in the job queues and wait until has disappeared  # # keep looking for the job in the job queues and wait until it has disappeared
152  jobruns=somedummy  # jobruns=somedummy
153  while [ "${jobruns}"x != x ]  # while [ "${jobruns}"x != x ]
154  do  # do
155    sleep 200  #   sleep 200
156    jobruns=`squeue --noheader -u mlosch | grep "$JOBNAME" | awk '{print $1}'`  #   jobruns=`squeue --noheader -u mlosch | grep "$JOBNAME" | awk '{print $1}'`
157    echo "waiting for job ${jobruns%% *} ($JOBNAME) to complete"  #   echo "waiting for job ${jobruns%% *} ($JOBNAME) to complete"
158    currentexp=`grep Experiment $MYOUTPUT | tail -1`  #   currentexp=`grep Experiment $MYOUTPUT | tail -1`
159    echo "currently running $currentexp"  #   echo "currently running $currentexp"
160  done  # done
161    
162  # workaround for mailing the stuff  # # workaround for mailing the stuff
163  echo "mail the stuff"  # echo "mail the stuff"
164    
165  MPACKCMD=../tools/mpack-1.6/mpack  # MPACKCMD=../tools/mpack-1.6/mpack
166  fn=`ls -dtr tr_$dNam* | grep -v tar.gz | tail -1`  # fn=`ls -dtr tr_$dNam* | grep -v tar.gz | tail -1`
167  echo "fname ${fn}"  # echo "fname ${fn}"
168  tar cf - $fn | gzip > "${fn}.tar.gz"  # tar cf - $fn | gzip > "${fn}.tar.gz"
169  $MPACKCMD -s MITgcm-test -m 3555000 ${fn}.tar.gz jmc@mitgcm.org  # $MPACKCMD -s MITgcm-test -m 3555000 ${fn}.tar.gz jmc@mitgcm.org
170  sleep 2  # sleep 2
171  rm -rf "${fn}.tar.gz"  # rm -rf "${fn}.tar.gz"
172    
173  echo "end of mitgcmtestreport"  echo "end of mitgcmtestreport"
174    
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