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jmc |
1.1 |
#PBS -S /bin/bash |
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#PBS -N tst_fast2 |
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#PBS -l select=1:ncpus=6:mpiprocs=6:model=san |
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#PBS -l walltime=12:00:00 |
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#PBS -V |
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#PBS -e /u/jcampin/test_pleiades/output/tst_fast2.stderr |
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#PBS -o /u/jcampin/test_pleiades/output/tst_fast2.stdout |
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jmc |
1.2 |
# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/nasa_ames/test_pleiades_fast2,v 1.1 2023/06/02 22:51:03 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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dNam='pleiades' |
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HERE="$HOME/test_$dNam" |
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SubD="$HERE/nasa_ames" ; OUTP="$HERE/output" ; SavD="$HERE/send" |
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SEND="ssh pfe $SavD/mpack" |
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ADDR='jm_c@mitgcm.org' |
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TST_DISK="/nobackupp17/jcampin" |
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TST_DIR="$TST_DISK/test_${dNam}" |
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#- where local copy of code is (need to be consistent with "test_submit_pleiades"): |
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srcDIR='.' |
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#srcDIR=$HERE |
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srcCode="MITgcm_today" |
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echo "cd $TST_DISK ; pwd (x2)" |
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cd $TST_DISK ; pwd |
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if test ! -d $TST_DIR ; then |
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echo -n "Creating a working dir: $TST_DIR ..." |
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#/bin/rm -rf $TST_DIR |
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mkdir $TST_DIR |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "Error: unable to make dir: $TST_DIR (err=$retVal ) --> Exit" |
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exit 1 |
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fi |
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fi |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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cd $TST_DIR ; pwd |
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checkOut=2 ; dblTr=0 ; typ='' ; addExp='' ; skipExp='' |
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#sfx='ifc' |
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#sfx='ieee'; dblTr=1 |
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#sfx='fast'; dblTr=1 |
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#sfx='fast'; checkOut=2 ; dblTr=2 #- fast-1 |
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sfx='fast'; checkOut=0 ; dblTr=1 #- fast-2 |
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#addExp='global_ocean.gm_k3d global_ocean.gm_res' |
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module purge |
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#- using older version of Intel Compiler: |
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#module load comp-intel/2016.2.181 |
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#- using newer version of Intel Compiler: |
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module load comp-intel/2020.4.304 |
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#- for MPI and NetCDF: |
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module load mpi-hpe/mpt.2.25 |
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module load hdf4/4.2.12 hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt |
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module list |
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OPTFILE="../tools/build_options/linux_amd64_ifort+mpi_ice_nas" |
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options="$typ -MPI 6" |
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#options="-j 2 $options" |
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#mpiCMD='mpiexec_mpt -np TR_NPROC ./mitgcmuv' |
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#- need this to get "staf": |
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#export PATH="$PATH:$HOME/bin" |
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dInWeek=`date +%a` |
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#if test "x$dInWeek" = xSun ; then options="$options -fast" ; fi |
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if test $sfx = 'fast' ; then options="$options -fast" ; fi |
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#options="$options -nc" ; checkOut=1 ; dblTr=0 |
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#options="$options -q" ; checkOut=0 ; dblTr=0 |
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#- keep a copy of MPI_MFILE: |
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#cp -p $PBS_NODEFILE $OUTP"/mf_"$sfx |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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gcmDIR="MITgcm_$sfx" |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$retVal) but continue" |
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fi |
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fi |
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done ) |
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echo "clean tst_2+2 + testreport output (+ Makefile_syntax files)" |
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( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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( cd $gcmDIR/verification ; ./testreport $typ -clean ) |
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# ( cd $gcmDIR/verification ; rm -f */build/Makefile_syntax ) |
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# ( cd $gcmDIR/verification ; rm -f */build/port_rand.i */build/ptracers_set_iolabel.i ) |
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echo "cvs update of dir $gcmDIR :" |
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( cd $gcmDIR ; $cmdCVS update -P -d ) 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "cvs update on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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echo -n "Removing working copy: $gcmDIR ..." |
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rm -rf $gcmDIR |
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echo " done" |
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fi |
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#echo "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..." |
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#$cmdCVS co -P -d $gcmDIR MITgcm > /dev/null |
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#retVal=$? |
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#if test "x$retVal" != x0 ; then |
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# echo "cvs co on '"`hostname`"' fail (return val=$retVal) => exit" |
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# exit |
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#fi |
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#if test -d $gcmDIR/verification ; then |
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# /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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# /usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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#fi |
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#- make a local copy (instead of using CVS): |
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today=`date +%Y%m%d` |
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nCount=0; updFile="${srcDIR}/updated_code" |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
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while [ $today -gt $updDate ] ; do |
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nCount=`expr $nCount + 1` |
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if [ $nCount -gt 40 ] ; then |
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echo " waiting too long (nCount=$nCount) for updated code" |
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echo " today=$today , updDate=$updDate " |
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ls -l $updFile |
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exit |
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fi |
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sleep 60 |
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
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done |
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ls -l $updFile |
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echo " waited nCount=$nCount for updated code ($updDate) to copy" |
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if test -d $srcDIR/$srcCode ; then |
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echo -n "Make local copy of dir '$srcDIR/$srcCode' to: $gcmDIR ..." |
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cp -pra $srcDIR/$srcCode $gcmDIR |
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echo " done" |
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else echo " dir: $srcDIR/$srcCode missing => exit" ; exit ; fi |
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fi |
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#- change dir to $gcmDIR/verification dir: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
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#------------ |
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for exp2add in $addExp ; do |
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if test -d ${exp2add}/CVS ; then |
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echo " assumes dir: $exp2add has been updated" |
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else |
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test -r $exp2add && /bin/rm -rf $exp2add |
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echo " add dir: $exp2add (from Contrib:verification_other)" |
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( $cmdCVS co -P -d $exp2add \ |
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MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
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if test $exp2add = 'global_oce_cs32' ; then |
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echo " link dir 'other_input/core2_cnyf' in here" |
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( cd ${exp2add} ; ln -s ../../../other_input/core2_cnyf . ) |
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fi |
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if test $exp2add = 'global_oce_llc90' ; then |
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echo " link dir 'other_input/gael_oce_llc90_input' to 'input_fields'" |
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( cd ${exp2add} ; ln -s ../../../other_input/gael_oce_llc90_input input_fields ) |
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echo " link dirs: 'core2_cnyf' & 'global_oce_input_fields/*' in input_verifs" |
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( test ! -e ${exp2add}/input_verifs && mkdir ${exp2add}/input_verifs |
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cd ${exp2add}/input_verifs |
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ln -s ../../../../other_input/core2_cnyf . |
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ln -s ../../../../other_input/global_oce_input_fields/* . ) |
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fi |
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/usr/bin/find $exp2add -type d | xargs chmod g+rxs |
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/usr/bin/find $exp2add -type f | xargs chmod g+r |
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fi |
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done |
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else |
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echo "no dir: $gcmDIR/verification => exit" |
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exit |
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fi |
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if [ $dblTr -eq 2 ] ; then |
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LIST=`ls */results/output.txt | sed 's/\/results\/output.txt//'` |
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tstList=`echo $LIST | sed 's/tutorial_.*$//'` |
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else |
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LIST=`ls tutorial_*/results/output.txt | head -n 1 | sed 's/\/results\/output.txt//'` |
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tstList="start_from $LIST" |
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fi |
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if [ $dblTr -ge 1 ] ; then |
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# echo '' |
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#- 0) just make all module header ( *__genmod.mod files) using modified Makefile |
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# echo ./testreport $options -of $OPTFILE -j 4 \ |
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# -repl_mk do_make_syntax.sh -obj -dd |
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# ./testreport $options -of $OPTFILE -j 4 \ |
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# -repl_mk do_make_syntax.sh -obj -dd 2>&1 |
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# options="$options -q" |
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echo '' |
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#- 1) just compile ("-nr"), using "-j 4" to speed up |
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echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx -j 4 -nr -t "$tstList" |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx -j 4 -nr -t "$tstList" |
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nFc=`grep -c '^Y . N N ' tr_out.txt` |
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echo " <= fail to compile $nFc experiments" |
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options="$options -q" |
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if [ $dblTr -eq 2 ] ; then |
| 224 |
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echo -n "Submit second job:" $SubD/test_${dNam}_${sfx}2 |
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qsub $SubD/test_${dNam}_${sfx}2 |
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exit 0 |
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fi |
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fi |
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echo '' |
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echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a $ADDR |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a $ADDR |
| 235 |
jmc |
1.2 |
retVal=$? |
| 236 |
jmc |
1.1 |
|
| 237 |
jmc |
1.2 |
if test "x$retVal" != x0 ; then |
| 238 |
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echo "<== testreport returned retVal=${retVal}, expecting 0" |
| 239 |
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echo " -> skip restart test 'do_tst_2+2'" |
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else |
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jmc |
1.1 |
echo '' |
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echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a $ADDR |
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../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a $ADDR |
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jmc |
1.2 |
fi |
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