Contents of /MITgcm_contrib/test_scripts/engaging/test_submit_engag

#! /usr/bin/env bash

# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_submit_engag,v 1.10 2021/04/20 04:31:39 jmc Exp $
# $Name:  $

today=`date +%Y%m%d`
dInWeek=`date +%a`

#- select type of BATCH_SCRIPT to submit:
typ=''
if [ $# -ge 1 ] ; then
  case $1 in
  'c6'|'c7') typ=".$1" ; shift ;;
  esac
fi

if test $# = 0
then
  TEST_LIST='gfoAdm ifcMpi ifcMp2 o64Adm o64Mpi gfoTlm'
 #if test "x$dInWeek" = xSun ; then TEST_LIST="$TEST_LIST iad ifc oad" ; fi
else
  TEST_LIST=$*
fi

QSUB="/usr/bin/sbatch"
#QLIST="/usr/bin/qstat -u $USER"
QLIST="/usr/bin/squeue -u $USER"
dNam='engaging'
HERE="$HOME/test_$dNam"
TST_DIR="/pool001/jm_c/test_$dNam"
logPfix='test_submit'

SUB_DIR="$HERE/engaging"
OUT_DIR="$HERE/output"
LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"
#SUB_DIR="$HERE/local"

#-- clean up old log files and start a new one:
cd $OUT_DIR

rm -f $logPfix.*.log_bak
if test -f $LOG_FIL ; then mv -f $LOG_FIL ${LOG_FIL}_bak ; fi
echo -n '-- Starting: '					| tee -a $LOG_FIL
date							| tee -a $LOG_FIL

n=$(( `ls $logPfix.*.log | wc -l` - 10 ))
if test $n -gt 0 ; then
  echo ' remove old log files:'				| tee -a $LOG_FIL
    ls -lt $logPfix.*.log | tail -"$n"			| tee -a $LOG_FIL
    ls -t  $logPfix.*.log | tail -"$n" | xargs rm -f
fi

if test -f /etc/profile.d/modules.sh ; then
  . /etc/profile.d/modules.sh
fi
module list						>> $LOG_FIL 2>&1

#---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
#-- now really do something:

  JOB_LIST=$TEST_LIST
  NB_SUB_JOBS=0
  for i in $JOB_LIST
  do
    sfx=`echo ${i} | sed -e 's/^.../&_/' -e 's/^o64/op64/' | tr '[:upper:]' '[:lower:]'`
    BATCH_SCRIPT="test_engag_${sfx}${typ}"
    if test -f $SUB_DIR/$BATCH_SCRIPT ; then
      #- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
      #  definition within $BATCH_SCRIPT slurm script
      JOB="${i}_tst"
      sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
      #job_exist=`$QLIST | grep $JOB | wc -l`
      job_exist=`$QLIST | grep $sJob | wc -l`
      if test "x_$job_exist" = x_0 ; then
        #-- move previous output file
        outList=`ls $JOB.std??? 2> /dev/null`
        if test "x$outList" != x ; then
          echo -n " moving job "$JOB" old output files:"| tee -a $LOG_FIL
          if test -d $OUT_DIR/prev ; then
            for xx in $outList ; do
              pp=$OUT_DIR/prev/$xx ; echo -n " $xx"	| tee -a $LOG_FIL
              test -f $pp.sav && mv -f $pp.sav $pp.old
              test -f $pp     && mv -f $pp     $pp.sav
              chmod a+r $xx ; mv -f $xx $OUT_DIR/prev
            done
            echo " to dir ./prev"			| tee -a $LOG_FIL
          else
            echo " <-- missing dir $OUT_DIR/prev"	| tee -a $LOG_FIL
          fi
        else echo " no old output files from job '$JOB'" | tee -a $LOG_FIL
        fi
        #-- submit job
          echo -n "--> $JOB : $BATCH_SCRIPT , "		| tee -a $LOG_FIL
          $QSUB $SUB_DIR/$BATCH_SCRIPT			| tee -a $LOG_FIL
          NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
      else
          echo "--> $JOB :"				| tee -a $LOG_FIL
          $QLIST | grep $sJob				| tee -a $LOG_FIL
          echo ' job already exist => skip this test'	| tee -a $LOG_FIL
      fi
    else
       echo 'no file:' $BATCH_SCRIPT 'to submit'	| tee -a $LOG_FIL
    fi
  done
  #echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'"	>> $LOG_FIL
  echo "Submitted $NB_SUB_JOBS jobs from dir: $SUB_DIR"	| tee -a $LOG_FIL
  echo -n '-- Finished at: '				| tee -a $LOG_FIL
  date							| tee -a $LOG_FIL

#---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
exit 0
1	#! /usr/bin/env bash
2
3	# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_submit_engag,v 1.10 2021/04/20 04:31:39 jmc Exp $
4	# $Name: $
5
6	today=`date +%Y%m%d`
7	dInWeek=`date +%a`
8
9	#- select type of BATCH_SCRIPT to submit:
10	typ=''
11	if [ $# -ge 1 ] ; then
12	case $1 in
13	'c6'\|'c7') typ=".$1" ; shift ;;
14	esac
15	fi
16
17	if test $# = 0
18	then
19	TEST_LIST='gfoAdm ifcMpi ifcMp2 o64Adm o64Mpi gfoTlm'
20	#if test "x$dInWeek" = xSun ; then TEST_LIST="$TEST_LIST iad ifc oad" ; fi
21	else
22	TEST_LIST=$*
23	fi
24
25	QSUB="/usr/bin/sbatch"
26	#QLIST="/usr/bin/qstat -u $USER"
27	QLIST="/usr/bin/squeue -u $USER"
28	dNam='engaging'
29	HERE="$HOME/test_$dNam"
30	TST_DIR="/pool001/jm_c/test_$dNam"
31	logPfix='test_submit'
32
33	SUB_DIR="$HERE/engaging"
34	OUT_DIR="$HERE/output"
35	LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"
36	#SUB_DIR="$HERE/local"
37
38	#-- clean up old log files and start a new one:
39	cd $OUT_DIR
40
41	rm -f $logPfix.*.log_bak
42	if test -f $LOG_FIL ; then mv -f $LOG_FIL ${LOG_FIL}_bak ; fi
43	echo -n '-- Starting: ' \| tee -a $LOG_FIL
44	date \| tee -a $LOG_FIL
45
46	n=$(( `ls $logPfix.*.log \| wc -l` - 10 ))
47	if test $n -gt 0 ; then
48	echo ' remove old log files:' \| tee -a $LOG_FIL
49	ls -lt $logPfix.*.log \| tail -"$n" \| tee -a $LOG_FIL
50	ls -t $logPfix.*.log \| tail -"$n" \| xargs rm -f
51	fi
52
53	if test -f /etc/profile.d/modules.sh ; then
54	. /etc/profile.d/modules.sh
55	fi
56	module list >> $LOG_FIL 2>&1
57
58	#---+----1----+----2----+----3----+----4----+----5----+----6----+----7-\|--+----\|
59	#-- now really do something:
60
61	JOB_LIST=$TEST_LIST
62	NB_SUB_JOBS=0
63	for i in $JOB_LIST
64	do
65	sfx=`echo ${i} \| sed -e 's/^.../&_/' -e 's/^o64/op64/' \| tr '[:upper:]' '[:lower:]'`
66	BATCH_SCRIPT="test_engag_${sfx}${typ}"
67	if test -f $SUB_DIR/$BATCH_SCRIPT ; then
68	#- job name ( $JOB ) & output-file name ( $JOB.std??? ) must match
69	# definition within $BATCH_SCRIPT slurm script
70	JOB="${i}_tst"
71	sJob=`printf "%8.8s" $JOB` #- squeue truncate name to only 1rst 8c
72	#job_exist=`$QLIST \| grep $JOB \| wc -l`
73	job_exist=`$QLIST \| grep $sJob \| wc -l`
74	if test "x_$job_exist" = x_0 ; then
75	#-- move previous output file
76	outList=`ls $JOB.std??? 2> /dev/null`
77	if test "x$outList" != x ; then
78	echo -n " moving job "$JOB" old output files:"\| tee -a $LOG_FIL
79	if test -d $OUT_DIR/prev ; then
80	for xx in $outList ; do
81	pp=$OUT_DIR/prev/$xx ; echo -n " $xx" \| tee -a $LOG_FIL
82	test -f $pp.sav && mv -f $pp.sav $pp.old
83	test -f $pp && mv -f $pp $pp.sav
84	chmod a+r $xx ; mv -f $xx $OUT_DIR/prev
85	done
86	echo " to dir ./prev" \| tee -a $LOG_FIL
87	else
88	echo " <-- missing dir $OUT_DIR/prev" \| tee -a $LOG_FIL
89	fi
90	else echo " no old output files from job '$JOB'" \| tee -a $LOG_FIL
91	fi
92	#-- submit job
93	echo -n "--> $JOB : $BATCH_SCRIPT , " \| tee -a $LOG_FIL
94	$QSUB $SUB_DIR/$BATCH_SCRIPT \| tee -a $LOG_FIL
95	NB_SUB_JOBS=`expr $NB_SUB_JOBS + 1`
96	else
97	echo "--> $JOB :" \| tee -a $LOG_FIL
98	$QLIST \| grep $sJob \| tee -a $LOG_FIL
99	echo ' job already exist => skip this test' \| tee -a $LOG_FIL
100	fi
101	else
102	echo 'no file:' $BATCH_SCRIPT 'to submit' \| tee -a $LOG_FIL
103	fi
104	done
105	#echo "info-sub-list: NB_SUB_JOBS='$NB_SUB_JOBS'" >> $LOG_FIL
106	echo "Submitted $NB_SUB_JOBS jobs from dir: $SUB_DIR" \| tee -a $LOG_FIL
107	echo -n '-- Finished at: ' \| tee -a $LOG_FIL
108	date \| tee -a $LOG_FIL
109
110	#---+----1----+----2----+----3----+----4----+----5----+----6----+----7-\|--+----\|
111	exit 0