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jmc |
1.1 |
#!/bin/bash |
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#SBATCH -J o64Mpi_tst |
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#SBATCH -p sched_mit_hill |
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jmc |
1.2 |
#SBATCH -t 06:00:00 |
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jmc |
1.1 |
#SBATCH --mem-per-cpu 4000 |
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#SBATCH -n 6 |
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#SBATCH -N 2 |
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jmc |
1.4 |
#SBATCH -x node122 |
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jmc |
1.1 |
# #SBATCH -x node[360,365] |
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#SBATCH -e /home/jm_c/test_engaging/output/o64Mpi_tst.stderr |
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#SBATCH -o /home/jm_c/test_engaging/output/o64Mpi_tst.stdout |
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#SBATCH --no-requeue |
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jmc |
1.6 |
# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_engag_op64_mpi,v 1.5 2023/11/06 14:23:01 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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jmc |
1.3 |
if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi |
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jmc |
1.1 |
# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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jmc |
1.3 |
headNode='eofe8' |
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jmc |
1.1 |
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dNam='engaging' |
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jmc |
1.3 |
HERE="$HOME/test_${dNam}" |
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jmc |
1.1 |
OUTP="$HERE/output"; SavD="$HERE/send" |
| 30 |
jmc |
1.3 |
SEND="ssh $headNode $SavD/mpack" |
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jmc |
1.1 |
TST_DIR="/pool001/jm_c/test_$dNam" |
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tmpFil="/tmp/"`basename $0`".$$" |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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#- which GitHub repository to use and how to access it: |
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git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other' |
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#git_repo='altMITgcm'; #git_code='MITgcm66h' |
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#-- |
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git_repo="https://github.com/$git_repo" |
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#git_repo="git://github.com/$git_repo" |
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#git_repo="git@github.com:$git_repo" |
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dblTr=0 ; typ='' ; addExp='' ; skipExp='' |
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sfx='o64Mpi'; dblTr=1 |
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#- currently, no NetCDF => no pkg/profiles |
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#skipExp="$skipExp global_oce_biogeo_bling" |
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module add open64 |
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module add mvapich2/open64/64/2.0b |
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export MPI_INC_DIR="$MPI_HOME/include" |
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OPTFILE="../tools/build_options/linux_amd64_open64" |
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#options="-j 2 -devel -gsl" |
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options="$typ -MPI 6" |
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#export OMP_NUM_THREADS=2 |
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#export OMP_SLAVE_STACK_SIZE=400m |
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#export GSL_IEEE_MODE=double-precision,mask-underflow,mask-denormalized |
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ulimit -s unlimited |
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#- need this to get "staf": |
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#export PATH="$PATH:$HOME/bin" |
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gcmDIR="MITgcm_$sfx" |
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dAlt=`date +%d` ; dAlt=`expr $dAlt % 3` |
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if [ $dAlt -eq 1 ] ; then options="$options -fast" |
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else options="$options -devel" ; fi |
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if test "x$skipExp" != x ; then skipExp=`echo $skipExp | sed 's/^ *//'` ; fi |
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checkOut=1 ; #options="$options -do" |
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#options="$options -nc" ; checkOut=1 |
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#options="$options -q" ; checkOut=0 ; dblTr=0 |
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jmc |
1.5 |
# dblTr=-1 #- skip testreport completely (only run "do_tst_2+2") |
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jmc |
1.1 |
|
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if test -d $TST_DIR ; then |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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else |
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#if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi |
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#if test ! -d $TST_DIR ; then |
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# echo "ERROR: Can't create directory \"$TST_DIR\"" |
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# exit 1 |
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#fi |
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#echo "start in new dir TST_DIR='$TST_DIR' at: "`date` |
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echo "ERROR: missing directory \"$TST_DIR\"" |
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exit 1 |
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fi |
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cd $TST_DIR |
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pwd |
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df . |
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NSLOTS=$SLURM_NTASKS |
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THEDATE=`date` |
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echo '********************************************************************************' |
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echo 'Start job '$THEDATE |
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echo 'NSLOTS = '$NSLOTS |
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echo '======= NODELIST ===============================================================' |
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echo $SLURM_NODELIST |
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cat /etc/redhat-release |
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echo '======= env ====================================================================' |
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env | grep SLURM |
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echo '======= modules ================================================================' |
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module list 2>&1 |
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echo '================================================================================' |
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#- check for disk space: relative space (99%) or absolute (10.G): |
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dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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if [ $dsp -gt 99 ] ; then |
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#dsp=`df -P . | tail -1 | awk '{print $4}'` |
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#if [ $dsp -le 100000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test ! -e $gcmDIR/.git/config ; then |
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echo "no file: $gcmDIR/.git/config => try to download a fresh clone" |
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checkOut=2 |
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fi |
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if test "x$addExp" != x ; then |
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if test ! -e $gcmDIR/$git_other/.git/config ; then |
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echo "no file: $gcmDIR/$git_other/.git/config => try a fresh clone" |
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checkOut=2 |
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fi |
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fi |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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jmc |
1.6 |
echo "cleaning output from $gcmDIR/verification @ "`date +"%H:%M:%S"`" :" |
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jmc |
1.1 |
#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$retVal) but continue" |
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fi |
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fi |
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done ) |
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jmc |
1.3 |
echo "clean tst_2+2 + testreport output" |
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jmc |
1.1 |
( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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( cd $gcmDIR/verification ; ./testreport $typ -clean ) |
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jmc |
1.3 |
if test "x$addExp" != x ; then |
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( cd $gcmDIR/verification |
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listD=`ls -o | grep '^l' | awk '{print $8}' 2> /dev/null` |
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echo " + remove local links: $listD" |
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/bin/rm -f $listD |
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) |
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fi |
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jmc |
1.6 |
echo "Update $git_code code in dir $gcmDIR @ "`date +"%H:%M:%S"`" :" |
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jmc |
1.1 |
( cd $gcmDIR ; git pull ) 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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jmc |
1.6 |
echo " and checkout master @ "`date +"%H:%M:%S"`" :" |
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jmc |
1.1 |
( cd $gcmDIR ; git checkout master -- . ) 2>&1 |
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if test "x$addExp" != x ; then |
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jmc |
1.6 |
echo "Update $git_other code in dir $gcmDIR/$git_other @ "`date +"%H:%M:%S"`" :" |
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jmc |
1.1 |
( cd $gcmDIR/$git_other ; git pull ) 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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jmc |
1.6 |
echo " and checkout master @ "`date +"%H:%M:%S"`" :" |
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jmc |
1.1 |
( cd $gcmDIR/$git_other ; git checkout master -- . ) 2>&1 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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echo -n "Removing working copy: $gcmDIR ..." |
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rm -rf $gcmDIR |
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echo " done" |
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fi |
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echo "Make a clone of $git_code from repo: $git_repo ..." |
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git clone $git_repo/${git_code}.git $gcmDIR 2> $tmpFil |
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retVal=$? |
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if test $retVal = 0 ; then |
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echo ' done' ; rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil ; rm -f $tmpFil |
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exit |
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fi |
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if test "x$addExp" != x ; then |
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echo "Make a clone of $git_other from repo: $git_repo ..." |
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( cd $gcmDIR ; git clone $git_repo/${git_other}.git 2> $tmpFil ) |
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retVal=$? |
| 190 |
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if test $retVal = 0 ; then |
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echo ' done' ; rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil ; rm -f $tmpFil |
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exit |
| 196 |
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fi |
| 197 |
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fi |
| 198 |
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if test -d $gcmDIR/verification ; then |
| 199 |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
| 200 |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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fi |
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fi |
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#- change dir to $gcmDIR/verification + add link for additional experiments: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
| 209 |
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for exp2add in $addExp ; do |
| 210 |
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test -r $exp2add && /bin/rm -rf $exp2add |
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if test -d ../$git_other/$exp2add ; then |
| 212 |
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echo " add $exp2add link from $git_other" |
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ln -s ../$git_other/$exp2add . |
| 214 |
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else |
| 215 |
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echo " missing dir: $git_other/$exp2add" |
| 216 |
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continue |
| 217 |
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fi |
| 218 |
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done |
| 219 |
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else |
| 220 |
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echo "no dir: $gcmDIR/verification => exit" |
| 221 |
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exit |
| 222 |
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fi |
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| 224 |
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if [ $dblTr -eq 1 ] ; then |
| 225 |
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echo '' |
| 226 |
jmc |
1.3 |
#- 1) just compile ("-nr"), using "-j 2" to speed up |
| 227 |
jmc |
1.1 |
echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \ |
| 228 |
jmc |
1.3 |
-j 2 -nr -odir ${dNam}-$sfx |
| 229 |
jmc |
1.1 |
./testreport $options -of $OPTFILE -skd "$skipExp" \ |
| 230 |
jmc |
1.3 |
-j 2 -nr -odir ${dNam}-$sfx |
| 231 |
jmc |
1.1 |
options="$options -q" |
| 232 |
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fi |
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| 234 |
jmc |
1.5 |
if [ $dblTr -ge 0 ] ; then |
| 235 |
jmc |
1.1 |
echo '' |
| 236 |
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#- 2) run and report results ; also finish to compile those who failed with "-j" |
| 237 |
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echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \ |
| 238 |
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-odir ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 239 |
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./testreport $options -of $OPTFILE -skd "$skipExp" \ |
| 240 |
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-odir ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 241 |
jmc |
1.4 |
retVal=$? |
| 242 |
jmc |
1.5 |
else retVal=0 ; fi |
| 243 |
jmc |
1.1 |
|
| 244 |
jmc |
1.4 |
if test "x$retVal" != x0 ; then |
| 245 |
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echo "<== testreport returned retVal=${retVal}, expecting 0" |
| 246 |
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echo " -> skip restart test 'do_tst_2+2'" |
| 247 |
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else |
| 248 |
jmc |
1.1 |
echo '' |
| 249 |
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#- 3) test restart and report results |
| 250 |
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echo ../tools/do_tst_2+2 -mpi \ |
| 251 |
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-o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 252 |
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../tools/do_tst_2+2 -mpi \ |
| 253 |
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-o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 254 |
jmc |
1.4 |
fi |
| 255 |
jmc |
1.1 |
|
| 256 |
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# exit 0 |
| 257 |
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# echo -n "-- SLURM_TASKS_PER_NODE= $SLURM_TASKS_PER_NODE ; " >> ${OUTP}/tracer_adj.log |
| 258 |
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# date >> ${OUTP}/tracer_adj.log |
| 259 |
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# grep 'My Processor Name' tutorial_tracer_adjsens/run/STDOUT.000? \ |
| 260 |
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# | sed 's/tutorial_tracer_adjsens\// /' >> ${OUTP}/tracer_adj.log |
| 261 |
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# grep 'My Processor Name' tutorial_tracer_adjsens/tr_run.som81/STDOUT.000? \ |
| 262 |
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# | sed 's/tutorial_tracer_adjsens\// /' >> ${OUTP}/tracer_adj.log |
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