/[MITgcm]/MITgcm_contrib/test_scripts/engaging/test_engag_op64_adm
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Revision 1.30 - (hide annotations) (download)
Sat Dec 30 16:55:12 2023 UTC (18 months, 2 weeks ago) by jmc
Branch: MAIN
CVS Tags: HEAD
Changes since 1.29: +6 -6 lines
print time few more times

1 jmc 1.1 #!/bin/bash
2 jmc 1.13 #SBATCH -J o64Adm_tst
3 jmc 1.1 #SBATCH -p sched_mit_hill
4 jmc 1.26 #SBATCH -t 06:00:00
5 jmc 1.1 #SBATCH --mem-per-cpu 4000
6     #SBATCH -n 6
7     #SBATCH -N 2
8 jmc 1.23 # #SBATCH -x node[360,365]
9 jmc 1.13 #SBATCH -e /home/jm_c/test_engaging/output/o64Adm_tst.stderr
10     #SBATCH -o /home/jm_c/test_engaging/output/o64Adm_tst.stdout
11 jmc 1.19 #SBATCH --no-requeue
12 jmc 1.1
13 jmc 1.30 # $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_engag_op64_adm,v 1.29 2023/11/06 14:23:01 jmc Exp $
14 jmc 1.1 # $Name: $
15    
16 jmc 1.27 if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi
17 jmc 1.3 # Note: added "ulimit -s unlimited" in file "~/.bashrc"
18 jmc 1.1 # to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI
19    
20     umask 0022
21     #- to get case insensitive "ls" (and order of tested experiments)
22     export LC_ALL="en_US.UTF-8"
23     echo " running on: "`hostname`
24 jmc 1.27 headNode='eofe8'
25 jmc 1.1
26     dNam='engaging'
27 jmc 1.27 HERE="$HOME/test_${dNam}"
28 jmc 1.1 OUTP="$HERE/output"; SavD="$HERE/send"
29 jmc 1.27 SEND="ssh $headNode $SavD/mpack"
30 jmc 1.1 TST_DIR="/pool001/jm_c/test_$dNam"
31 jmc 1.11 tmpFil="/tmp/"`basename $0`".$$"
32     cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
33 jmc 1.13 #- which GitHub repository to use and how to access it:
34 jmc 1.17 git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
35 jmc 1.11 #git_repo='altMITgcm'; #git_code='MITgcm66h'
36 jmc 1.13 #--
37     git_repo="https://github.com/$git_repo"
38     #git_repo="git://github.com/$git_repo"
39     #git_repo="git@github.com:$git_repo"
40 jmc 1.1
41 jmc 1.21 dblTr=0 ; typ='' ; addExp='' ; skipExp=''
42     sfx='o64Adm'; typ='-adm' ; dblTr=1
43 jmc 1.25 #- currently, no NetCDF => no pkg/profiles
44     skipExp="$skipExp global_oce_biogeo_bling"
45 jmc 1.1 module add open64
46     module add mvapich2/open64/64/2.0b
47     export MPI_INC_DIR="$MPI_HOME/include"
48     OPTFILE="../tools/build_options/linux_amd64_open64"
49     #options="-j 2 -devel -gsl"
50     options="$typ -MPI 6"
51     #export OMP_NUM_THREADS=2
52     #export OMP_SLAVE_STACK_SIZE=400m
53     #export GSL_IEEE_MODE=double-precision,mask-underflow,mask-denormalized
54     ulimit -s unlimited
55     #- need this to get "staf":
56 jmc 1.27 export PATH="$PATH:$HOME/bin"
57 jmc 1.1
58 jmc 1.11 gcmDIR="MITgcm_$sfx"
59 jmc 1.1 dAlt=`date +%d` ; dAlt=`expr $dAlt % 3`
60     if [ $dAlt -eq 1 ] ; then options="$options -fast"
61     else options="$options -devel" ; fi
62 jmc 1.25 if test "x$skipExp" != x ; then skipExp=`echo $skipExp | sed 's/^ *//'` ; fi
63 jmc 1.1
64 jmc 1.3 checkOut=1 ; #options="$options -do"
65 jmc 1.1 #options="$options -nc" ; checkOut=1
66 jmc 1.21 #options="$options -q" ; checkOut=0 ; dblTr=0
67 jmc 1.29 # dblTr=-1 #- skip testreport completely (only run "do_tst_2+2")
68 jmc 1.1
69 jmc 1.11 if test -d $TST_DIR ; then
70     echo "start from TST_DIR='$TST_DIR' at: "`date`
71     else
72     #if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi
73     #if test ! -d $TST_DIR ; then
74     # echo "ERROR: Can't create directory \"$TST_DIR\""
75     # exit 1
76     #fi
77     #echo "start in new dir TST_DIR='$TST_DIR' at: "`date`
78     echo "ERROR: missing directory \"$TST_DIR\""
79     exit 1
80     fi
81     cd $TST_DIR
82     pwd
83 jmc 1.20 df .
84 jmc 1.11
85 jmc 1.1 NSLOTS=$SLURM_NTASKS
86 jmc 1.2 THEDATE=`date`
87 jmc 1.1 echo '********************************************************************************'
88     echo 'Start job '$THEDATE
89     echo 'NSLOTS = '$NSLOTS
90     echo '======= NODELIST ==============================================================='
91     echo $SLURM_NODELIST
92 jmc 1.4 cat /etc/redhat-release
93 jmc 1.1 echo '======= env ===================================================================='
94 jmc 1.2 env | grep SLURM
95     echo '======= modules ================================================================'
96     module list 2>&1
97 jmc 1.1 echo '================================================================================'
98    
99     #- check for disk space: relative space (99%) or absolute (10.G):
100     dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'`
101     if [ $dsp -gt 99 ] ; then
102     #dsp=`df -P . | tail -1 | awk '{print $4}'`
103     #if [ $dsp -le 100000000 ] ; then
104     echo 'Not enough space on this disk => do not run testreport.'
105     df .
106     exit
107     fi
108     if [ $checkOut -eq 1 ] ; then
109 jmc 1.15 if test ! -e $gcmDIR/.git/config ; then
110     echo "no file: $gcmDIR/.git/config => try to download a fresh clone"
111     checkOut=2
112     fi
113     if test "x$addExp" != x ; then
114     if test ! -e $gcmDIR/$git_other/.git/config ; then
115     echo "no file: $gcmDIR/$git_other/.git/config => try a fresh clone"
116     checkOut=2
117     fi
118     fi
119     fi
120     if [ $checkOut -eq 1 ] ; then
121 jmc 1.30 echo "cleaning output from $gcmDIR/verification @ "`date +"%H:%M:%S"`" :"
122 jmc 1.1 #- remove previous output tar files and tar & remove previous output-dir
123     /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz
124     ( cd $gcmDIR/verification
125     listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null`
126     for dd in $listD
127     do
128     if test -d $dd ; then
129     tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd
130 jmc 1.11 retVal=$?
131     if test "x$retVal" != x0 ; then
132 jmc 1.1 echo "ERROR in tar+gzip prev outp-dir: $dd"
133 jmc 1.11 echo " on '"`hostname`"' (return val=$retVal) but continue"
134 jmc 1.1 fi
135     fi
136     done )
137 jmc 1.27 echo "clean testreport output"
138     # ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean )
139 jmc 1.1 ( cd $gcmDIR/verification ; ./testreport $typ -clean )
140 jmc 1.27 if test "x$addExp" != x ; then
141     ( cd $gcmDIR/verification
142     listD=`ls -o | grep '^l' | awk '{print $8}' 2> /dev/null`
143     echo " + remove local links: $listD"
144     /bin/rm -f $listD
145     )
146     fi
147 jmc 1.30 echo "Update $git_code code in dir $gcmDIR @ "`date +"%H:%M:%S"`" :"
148 jmc 1.14 ( cd $gcmDIR ; git pull ) 2>&1
149 jmc 1.11 retVal=$?
150     if test "x$retVal" != x0 ; then
151     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
152 jmc 1.1 exit
153     fi
154 jmc 1.30 echo " and checkout master @ "`date +"%H:%M:%S"`" :"
155 jmc 1.14 ( cd $gcmDIR ; git checkout master -- . ) 2>&1
156 jmc 1.15 if test "x$addExp" != x ; then
157 jmc 1.30 echo "Update $git_other code in dir $gcmDIR/$git_other @ "`date +"%H:%M:%S"`" :"
158 jmc 1.15 ( cd $gcmDIR/$git_other ; git pull ) 2>&1
159     retVal=$?
160     if test "x$retVal" != x0 ; then
161     echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
162     exit
163     fi
164 jmc 1.30 echo " and checkout master @ "`date +"%H:%M:%S"`" :"
165 jmc 1.15 ( cd $gcmDIR/$git_other ; git checkout master -- . ) 2>&1
166 jmc 1.1 fi
167     fi
168 jmc 1.17
169 jmc 1.1 if [ $checkOut -eq 2 ] ; then
170     if test -e $gcmDIR ; then
171 jmc 1.3 echo -n "Removing working copy: $gcmDIR ..."
172     rm -rf $gcmDIR
173     echo " done"
174 jmc 1.1 fi
175 jmc 1.17 echo "Make a clone of $git_code from repo: $git_repo ..."
176 jmc 1.13 git clone $git_repo/${git_code}.git $gcmDIR 2> $tmpFil
177 jmc 1.11 retVal=$?
178     if test $retVal = 0 ; then
179     echo ' done' ; rm -f $tmpFil
180     else
181     echo " Error: 'git clone' returned: $retVal"
182     cat $tmpFil ; rm -f $tmpFil
183 jmc 1.1 exit
184 jmc 1.11 fi
185 jmc 1.15 if test "x$addExp" != x ; then
186     echo "Make a clone of $git_other from repo: $git_repo ..."
187     ( cd $gcmDIR ; git clone $git_repo/${git_other}.git 2> $tmpFil )
188     retVal=$?
189     if test $retVal = 0 ; then
190     echo ' done' ; rm -f $tmpFil
191     else
192     echo " Error: 'git clone' returned: $retVal"
193     cat $tmpFil ; rm -f $tmpFil
194     exit
195     fi
196     fi
197 jmc 1.1 if test -d $gcmDIR/verification ; then
198     /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs
199     /usr/bin/find $gcmDIR -type f | xargs chmod g+r
200     fi
201     fi
202    
203 jmc 1.17 #- change dir to $gcmDIR/verification + add link for additional experiments:
204 jmc 1.1 if test -e $gcmDIR/verification ; then
205     if [ $checkOut -lt 2 ] ; then
206     echo " dir $gcmDIR/verification exist" ; fi
207     cd $gcmDIR/verification
208 jmc 1.7 for exp2add in $addExp ; do
209 jmc 1.15 test -r $exp2add && /bin/rm -rf $exp2add
210     if test -d ../$git_other/$exp2add ; then
211     echo " add $exp2add link from $git_other"
212     ln -s ../$git_other/$exp2add .
213 jmc 1.7 else
214 jmc 1.15 echo " missing dir: $git_other/$exp2add"
215     continue
216 jmc 1.7 fi
217     done
218 jmc 1.1 else
219     echo "no dir: $gcmDIR/verification => exit"
220     exit
221     fi
222    
223 jmc 1.21 if [ $dblTr -eq 1 ] ; then
224 jmc 1.8 echo ''
225 jmc 1.27 #- 1) just compile ("-nr"), using "-j 2" to speed up
226 jmc 1.25 echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
227 jmc 1.27 -j 2 -nr -odir ${dNam}-$sfx
228 jmc 1.25 ./testreport $options -of $OPTFILE -skd "$skipExp" \
229 jmc 1.27 -j 2 -nr -odir ${dNam}-$sfx
230 jmc 1.21 options="$options -q"
231     fi
232    
233 jmc 1.29 if [ $dblTr -ge 0 ] ; then
234 jmc 1.21 echo ''
235 jmc 1.27 #- 2) run and report results ; also finish to compile those who failed with "-j"
236 jmc 1.25 echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
237     -odir ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
238     ./testreport $options -of $OPTFILE -skd "$skipExp" \
239     -odir ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
240 jmc 1.28 retVal=$?
241 jmc 1.29 else retVal=0 ; fi
242 jmc 1.8
243 jmc 1.28 if test "x$retVal" != x0 ; then
244     echo "<== testreport returned retVal=${retVal}, expecting 0"
245     # echo " -> skip restart test 'do_tst_2+2'"
246     #else
247 jmc 1.8 # echo ''
248 jmc 1.25 #- 3) test restart and report results
249 jmc 1.8 # echo ../tools/do_tst_2+2 -mpi \
250 jmc 1.10 # -o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
251 jmc 1.8 # ../tools/do_tst_2+2 -mpi \
252 jmc 1.10 # -o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
253 jmc 1.28 fi
254 jmc 1.1
255 jmc 1.24 # exit 0
256     echo -n "-- SLURM_TASKS_PER_NODE= $SLURM_TASKS_PER_NODE ; " >> ${OUTP}/tracer_adj.log
257     date >> ${OUTP}/tracer_adj.log
258     grep 'My Processor Name' tutorial_tracer_adjsens/run/STDOUT.000? \
259     | sed 's/tutorial_tracer_adjsens\// /' >> ${OUTP}/tracer_adj.log
260     grep 'My Processor Name' tutorial_tracer_adjsens/tr_run.som81/STDOUT.000? \
261     | sed 's/tutorial_tracer_adjsens\// /' >> ${OUTP}/tracer_adj.log

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