Annotation of /MITgcm_contrib/test_scripts/engaging/test_engag_ifc_mp2

#!/bin/bash
#SBATCH -J ifcMp2_tst
#SBATCH -p sched_mit_hill
#SBATCH -t 06:00:00
#SBATCH --mem-per-cpu 4000
#SBATCH -N 1
#SBATCH --tasks-per-node 10
# #SBATCH -x node[360,365]
#SBATCH -e /home/jm_c/test_engaging/output/ifcMp2_tst.stderr
#SBATCH -o /home/jm_c/test_engaging/output/ifcMp2_tst.stdout
#SBATCH --no-requeue

# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_engag_ifc_mp2,v 1.29 2023/11/06 14:23:01 jmc Exp $
# $Name:  $

if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi
# Note: added "ulimit -s unlimited" in file "~/.bashrc"
# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI

umask 0022
#- to get case insensitive "ls" (and order of tested experiments)
export LC_ALL="en_US.UTF-8"
echo " running on: "`hostname`
headNode='eofe8'

dNam='engaging'
HERE="$HOME/test_${dNam}"
OUTP="$HERE/output"; SavD="$HERE/send"
SEND="ssh $headNode $SavD/mpack"
TST_DIR="/pool001/jm_c/test_$dNam"
tmpFil="/tmp/"`basename $0`".$$"
  cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
#- which GitHub repository to use and how to access it:
  git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
 #git_repo='altMITgcm'; #git_code='MITgcm66h'
#--
  git_repo="https://github.com/$git_repo"
 #git_repo="git://github.com/$git_repo"
 #git_repo="git@github.com:$git_repo"

dblTr=0 ; typ='' ; addExp='' ; skipExp=''
sfx='ifcMp2'; dblTr=1
addExp='atm_gray atm_strato offline_cheapaml'
 module add slurm
 module add gcc
 module add engaging/intel/2013.1.046
#export MPI_INC_DIR="$MPI_HOME/include"
 OPTFILE="../tools/build_options/linux_amd64_ifort+impi"
 export GENERIC='on' # <-- to prevent the use of "-xHost" option
 mpiCMD="mpirun -env I_MPI_DEBUG 2 -n TR_NPROC ./mitgcmuv" #- currently not used
 options="$typ -MPI 4 -mth"
#options="-j 4 $options"
 export OMP_NUM_THREADS=2
 export KMP_STACKSIZE=400m
#options="$options -gsl"
#export GSL_IEEE_MODE=double-precision,mask-underflow,mask-denormalized
 ulimit -s unlimited
#- need this to get "staf" & "do_make_syntax.sh":
 export PATH="$PATH:$HOME/bin"

gcmDIR="MITgcm_$sfx"
dAlt=`date +%d` ; dAlt=`expr $dAlt % 3`
if [ $dAlt -eq 1 ] ; then options="$options -fast"
else options="$options -devel" ; fi
if test "x$skipExp" != x ; then skipExp=`echo $skipExp | sed 's/^ *//'` ; fi

checkOut=1 ; #options="$options -do"
#options="$options -nc" ; checkOut=1 ; dblTr=0
#options="$options -q"  ; checkOut=0 ; dblTr=0
# dblTr=-1 #- skip testreport completely (only run "do_tst_2+2")

if test -d $TST_DIR ; then
  echo "start from TST_DIR='$TST_DIR' at: "`date`
else
 #if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi
 #if test ! -d $TST_DIR ; then
 #  echo "ERROR: Can't create directory \"$TST_DIR\""
 #  exit 1
 #fi
 #echo "start in new dir TST_DIR='$TST_DIR' at: "`date`
  echo "ERROR: missing directory \"$TST_DIR\""
  exit 1
fi
cd $TST_DIR
pwd
df .

NSLOTS=$SLURM_NTASKS
THEDATE=`date`
echo '********************************************************************************'
echo 'Start job '$THEDATE
echo 'NSLOTS = '$NSLOTS
echo '======= NODELIST ==============================================================='
echo $SLURM_NODELIST
cat /etc/redhat-release
echo '======= Procs =================================================================='
grep 'model name' /proc/cpuinfo | uniq
echo -n ' x '
grep -c 'model name' /proc/cpuinfo
echo '======= env ===================================================================='
env | grep SLURM
echo '======= modules ================================================================'
module list 2>&1
echo '================================================================================'

#-
 MPI_MFile="${OUTP}/mf_${sfx}"   #- currently not used
#mpiCMD="mpirun -hostfile TR_MFILE -n TR_NPROC ./mitgcmuv"
#- make the testreport MPI_MFILE:
#listNODES=`echo $SLURM_NODELIST | sed -e 's/\[/ /' -e 's/\]//' -e 's/,/ /' -e 's/-/ /'`
# duplicate the 2 listed nodes into a 6 list file:
#/bin/rm -f $MPI_MFile ; touch $MPI_MFile
#for nc in `seq 1 4` ; do pfx=''
# for nd in $listNODES ; do
#  if test "x$pfx" = x ; then pfx=$nd ; else
#    echo "${pfx}${nd}" >> $MPI_MFile
#  fi
# done
#done

#- check for disk space: relative space (99%) or absolute (10.G):
dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'`
if [ $dsp -gt 99 ] ; then
#dsp=`df -P . | tail -1 | awk '{print $4}'`
#if [ $dsp -le 100000000 ] ; then
  echo 'Not enough space on this disk => do not run testreport.'
  df .
  exit
fi

if [ $checkOut -eq 1 ] ; then
  if test ! -e $gcmDIR/.git/config ; then
    echo "no file: $gcmDIR/.git/config => try to download a fresh clone"
    checkOut=2
  fi
  if test "x$addExp" != x ; then
    if test ! -e $gcmDIR/$git_other/.git/config ; then
      echo "no file: $gcmDIR/$git_other/.git/config => try a fresh clone"
      checkOut=2
    fi
  fi
fi
if [ $checkOut -eq 1 ] ; then
    echo "cleaning output from $gcmDIR/verification @ "`date +"%H:%M:%S"`" :"
#- remove previous output tar files and tar & remove previous output-dir
    /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz
    ( cd $gcmDIR/verification
      listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null`
      for dd in $listD
      do
        if test -d $dd ; then
          tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd
          retVal=$?
          if test "x$retVal" != x0 ; then
             echo "ERROR in tar+gzip prev outp-dir: $dd"
             echo " on '"`hostname`"' (return val=$retVal) but continue"
          fi
        fi
      done )
    echo "clean tst_2+2 + testreport output (+ Makefile_syntax files)"
    ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean )
    ( cd $gcmDIR/verification ; ./testreport $typ -clean )
    ( cd $gcmDIR/verification ; rm -f */build/Makefile_syntax )
    ( cd $gcmDIR/verification ; rm -f */build/port_rand.i */build/ptracers_set_iolabel.i )
    if test "x$addExp" != x ; then
      ( cd $gcmDIR/verification
        listD=`ls -o | grep '^l' | awk '{print $8}' 2> /dev/null`
        echo " + remove local links: $listD"
        /bin/rm -f $listD
      )
    fi
    echo "Update $git_code code in dir $gcmDIR @ "`date +"%H:%M:%S"`" :"
    ( cd $gcmDIR ; git pull ) 2>&1
    retVal=$?
    if test "x$retVal" != x0 ; then
       echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
       exit
    fi
    echo "  and checkout master @ "`date +"%H:%M:%S"`" :"
    ( cd $gcmDIR ; git checkout master -- . ) 2>&1
  if test "x$addExp" != x ; then
    echo "Update $git_other code in dir $gcmDIR/$git_other @ "`date +"%H:%M:%S"`" :"
    ( cd $gcmDIR/$git_other ; git pull ) 2>&1
    retVal=$?
    if test "x$retVal" != x0 ; then
       echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
       exit
    fi
    echo "  and checkout master @ "`date +"%H:%M:%S"`" :"
    ( cd $gcmDIR/$git_other ; git checkout master -- . ) 2>&1
  fi
fi

if [ $checkOut -eq 2 ] ; then
  if test -e $gcmDIR ; then
    echo -n "Removing working copy: $gcmDIR ..."
    rm -rf $gcmDIR
    echo "  done"
  fi
  echo "Make a clone of $git_code from repo: $git_repo ..."
  git clone $git_repo/${git_code}.git $gcmDIR 2> $tmpFil
  retVal=$?
  if test $retVal = 0 ; then
      echo '  done' ; rm -f $tmpFil
  else
      echo " Error: 'git clone' returned: $retVal"
      cat $tmpFil ; rm -f $tmpFil
      exit
  fi
  if test "x$addExp" != x ; then
    echo "Make a clone of $git_other from repo: $git_repo ..."
    ( cd $gcmDIR ; git clone $git_repo/${git_other}.git 2> $tmpFil )
    retVal=$?
    if test $retVal = 0 ; then
      echo '  done' ; rm -f $tmpFil
    else
      echo " Error: 'git clone' returned: $retVal"
      cat $tmpFil ; rm -f $tmpFil
      exit
    fi
  fi
  if test -d $gcmDIR/verification ; then
    /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs
    /usr/bin/find $gcmDIR -type f | xargs chmod g+r
  fi
fi

#- change dir to $gcmDIR/verification + add link for additional experiments:
if test -e $gcmDIR/verification ; then
  if [ $checkOut -lt 2 ] ; then
    echo " dir $gcmDIR/verification exist" ; fi
  cd $gcmDIR/verification
  for exp2add in $addExp ; do
    test -r $exp2add && /bin/rm -rf $exp2add
    if test -d  ../$git_other/$exp2add ; then
      echo "  add $exp2add link from $git_other"
      ln -s ../$git_other/$exp2add .
    else
      echo "  missing dir: $git_other/$exp2add"
      continue
    fi
  done
else
  echo "no dir: $gcmDIR/verification => exit"
  exit
fi

if [ $dblTr -eq 1 ] ; then
  echo ''
#- 0) just make all module header ( *__genmod.mod files) using modified Makefile
#  <-- skip this step
#- 1) just compile ("-nr"), using "-j 4" to speed up
  echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
    -j 4 -nr -odir ${dNam}-$sfx
  ./testreport $options -of $OPTFILE -skd "$skipExp" \
    -j 4 -nr -odir ${dNam}-$sfx
  nFc=`grep -c '^Y . N N ' tr_out.txt`
  echo " <= fail to compile $nFc experiments"
  options="$options -q"
fi

if [ $dblTr -ge 0 ] ; then
  echo ''
#- 2) run and report results ; also finish to compile those who failed with "-j"
 #echo ./testreport $options -of $OPTFILE -command \'$mpiCMD\' -mf $MPI_MFile \
  echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
    -odir ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
 #./testreport $options -of $OPTFILE -command "$mpiCMD" -mf $MPI_MFile \
  ./testreport $options -of $OPTFILE -skd "$skipExp" \
    -odir ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
  retVal=$?
else retVal=0 ; fi

if test "x$retVal" != x0 ; then
  echo "<== testreport returned retVal=${retVal}, expecting 0"
  echo " -> skip restart test 'do_tst_2+2'"
else
  echo ''
#- 3) test restart and report results
 #echo ../tools/do_tst_2+2 -mpi -exe \'$mpiCMD\' -mf $MPI_MFile \
  echo ../tools/do_tst_2+2 -mpi \
    -o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
 #../tools/do_tst_2+2 -mpi -exe "$mpiCMD" -mf $MPI_MFile \
  ../tools/do_tst_2+2 -mpi \
    -o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
fi
1	jmc	1.1	#!/bin/bash
2	jmc	1.13	#SBATCH -J ifcMp2_tst
3	jmc	1.1	#SBATCH -p sched_mit_hill
4	jmc	1.26	#SBATCH -t 06:00:00
5	jmc	1.1	#SBATCH --mem-per-cpu 4000
6			#SBATCH -N 1
7			#SBATCH --tasks-per-node 10
8	jmc	1.24	# #SBATCH -x node[360,365]
9	jmc	1.13	#SBATCH -e /home/jm_c/test_engaging/output/ifcMp2_tst.stderr
10			#SBATCH -o /home/jm_c/test_engaging/output/ifcMp2_tst.stdout
11	jmc	1.19	#SBATCH --no-requeue
12	jmc	1.1
13	jmc	1.30	# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_engag_ifc_mp2,v 1.29 2023/11/06 14:23:01 jmc Exp $
14	jmc	1.1	# $Name: $
15
16	jmc	1.27	if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi
17	jmc	1.1	# Note: added "ulimit -s unlimited" in file "~/.bashrc"
18			# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI
19
20			umask 0022
21			#- to get case insensitive "ls" (and order of tested experiments)
22			export LC_ALL="en_US.UTF-8"
23			echo " running on: "`hostname`
24	jmc	1.27	headNode='eofe8'
25	jmc	1.1
26			dNam='engaging'
27	jmc	1.27	HERE="$HOME/test_${dNam}"
28	jmc	1.1	OUTP="$HERE/output"; SavD="$HERE/send"
29	jmc	1.27	SEND="ssh $headNode $SavD/mpack"
30	jmc	1.1	TST_DIR="/pool001/jm_c/test_$dNam"
31	jmc	1.11	tmpFil="/tmp/"`basename $0`".$$"
32			cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
33	jmc	1.13	#- which GitHub repository to use and how to access it:
34	jmc	1.14	git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other'
35	jmc	1.11	#git_repo='altMITgcm'; #git_code='MITgcm66h'
36	jmc	1.13	#--
37			git_repo="https://github.com/$git_repo"
38			#git_repo="git://github.com/$git_repo"
39			#git_repo="git@github.com:$git_repo"
40	jmc	1.1
41	jmc	1.23	dblTr=0 ; typ='' ; addExp='' ; skipExp=''
42			sfx='ifcMp2'; dblTr=1
43	jmc	1.16	addExp='atm_gray atm_strato offline_cheapaml'
44	jmc	1.1	module add slurm
45			module add gcc
46			module add engaging/intel/2013.1.046
47			#export MPI_INC_DIR="$MPI_HOME/include"
48			OPTFILE="../tools/build_options/linux_amd64_ifort+impi"
49	jmc	1.4	export GENERIC='on' # <-- to prevent the use of "-xHost" option
50	jmc	1.1	mpiCMD="mpirun -env I_MPI_DEBUG 2 -n TR_NPROC ./mitgcmuv" #- currently not used
51	jmc	1.8	options="$typ -MPI 4 -mth"
52	jmc	1.9	#options="-j 4 $options"
53	jmc	1.1	export OMP_NUM_THREADS=2
54	jmc	1.2	export KMP_STACKSIZE=400m
55	jmc	1.1	#options="$options -gsl"
56			#export GSL_IEEE_MODE=double-precision,mask-underflow,mask-denormalized
57			ulimit -s unlimited
58			#- need this to get "staf" & "do_make_syntax.sh":
59			export PATH="$PATH:$HOME/bin"
60
61	jmc	1.11	gcmDIR="MITgcm_$sfx"
62	jmc	1.1	dAlt=`date +%d` ; dAlt=`expr $dAlt % 3`
63			if [ $dAlt -eq 1 ] ; then options="$options -fast"
64			else options="$options -devel" ; fi
65	jmc	1.27	if test "x$skipExp" != x ; then skipExp=`echo $skipExp \| sed 's/^ *//'` ; fi
66	jmc	1.1
67			checkOut=1 ; #options="$options -do"
68	jmc	1.23	#options="$options -nc" ; checkOut=1 ; dblTr=0
69			#options="$options -q" ; checkOut=0 ; dblTr=0
70	jmc	1.29	# dblTr=-1 #- skip testreport completely (only run "do_tst_2+2")
71	jmc	1.1
72	jmc	1.11	if test -d $TST_DIR ; then
73			echo "start from TST_DIR='$TST_DIR' at: "`date`
74			else
75			#if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi
76			#if test ! -d $TST_DIR ; then
77			# echo "ERROR: Can't create directory \"$TST_DIR\""
78			# exit 1
79			#fi
80			#echo "start in new dir TST_DIR='$TST_DIR' at: "`date`
81			echo "ERROR: missing directory \"$TST_DIR\""
82			exit 1
83			fi
84			cd $TST_DIR
85			pwd
86	jmc	1.21	df .
87	jmc	1.11
88	jmc	1.1	NSLOTS=$SLURM_NTASKS
89			THEDATE=`date`
90			echo '********************************************************************************'
91			echo 'Start job '$THEDATE
92			echo 'NSLOTS = '$NSLOTS
93			echo '======= NODELIST ==============================================================='
94			echo $SLURM_NODELIST
95	jmc	1.20	cat /etc/redhat-release
96	jmc	1.4	echo '======= Procs =================================================================='
97			grep 'model name' /proc/cpuinfo \| uniq
98			echo -n ' x '
99			grep -c 'model name' /proc/cpuinfo
100	jmc	1.1	echo '======= env ===================================================================='
101			env \| grep SLURM
102			echo '======= modules ================================================================'
103			module list 2>&1
104			echo '================================================================================'
105
106			#-
107			MPI_MFile="${OUTP}/mf_${sfx}" #- currently not used
108			#mpiCMD="mpirun -hostfile TR_MFILE -n TR_NPROC ./mitgcmuv"
109			#- make the testreport MPI_MFILE:
110			#listNODES=`echo $SLURM_NODELIST \| sed -e 's/\[/ /' -e 's/\]//' -e 's/,/ /' -e 's/-/ /'`
111			# duplicate the 2 listed nodes into a 6 list file:
112			#/bin/rm -f $MPI_MFile ; touch $MPI_MFile
113			#for nc in `seq 1 4` ; do pfx=''
114			# for nd in $listNODES ; do
115			# if test "x$pfx" = x ; then pfx=$nd ; else
116			# echo "${pfx}${nd}" >> $MPI_MFile
117			# fi
118			# done
119			#done
120
121			#- check for disk space: relative space (99%) or absolute (10.G):
122			dsp=`df -P . \| tail -1 \| awk '{print $5}' \| sed 's/%$//'`
123			if [ $dsp -gt 99 ] ; then
124			#dsp=`df -P . \| tail -1 \| awk '{print $4}'`
125			#if [ $dsp -le 100000000 ] ; then
126			echo 'Not enough space on this disk => do not run testreport.'
127			df .
128			exit
129			fi
130	jmc	1.14
131			if [ $checkOut -eq 1 ] ; then
132			if test ! -e $gcmDIR/.git/config ; then
133			echo "no file: $gcmDIR/.git/config => try to download a fresh clone"
134			checkOut=2
135			fi
136			if test "x$addExp" != x ; then
137			if test ! -e $gcmDIR/$git_other/.git/config ; then
138			echo "no file: $gcmDIR/$git_other/.git/config => try a fresh clone"
139			checkOut=2
140			fi
141			fi
142			fi
143	jmc	1.1	if [ $checkOut -eq 1 ] ; then
144	jmc	1.30	echo "cleaning output from $gcmDIR/verification @ "`date +"%H:%M:%S"`" :"
145	jmc	1.1	#- remove previous output tar files and tar & remove previous output-dir
146			/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz
147			( cd $gcmDIR/verification
148			listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null`
149			for dd in $listD
150			do
151			if test -d $dd ; then
152			tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd
153	jmc	1.11	retVal=$?
154			if test "x$retVal" != x0 ; then
155	jmc	1.1	echo "ERROR in tar+gzip prev outp-dir: $dd"
156	jmc	1.11	echo " on '"`hostname`"' (return val=$retVal) but continue"
157	jmc	1.1	fi
158			fi
159			done )
160			echo "clean tst_2+2 + testreport output (+ Makefile_syntax files)"
161			( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean )
162			( cd $gcmDIR/verification ; ./testreport $typ -clean )
163			( cd $gcmDIR/verification ; rm -f */build/Makefile_syntax )
164			( cd $gcmDIR/verification ; rm -f /build/port_rand.i /build/ptracers_set_iolabel.i )
165	jmc	1.27	if test "x$addExp" != x ; then
166			( cd $gcmDIR/verification
167			listD=`ls -o \| grep '^l' \| awk '{print $8}' 2> /dev/null`
168			echo " + remove local links: $listD"
169			/bin/rm -f $listD
170			)
171			fi
172	jmc	1.30	echo "Update $git_code code in dir $gcmDIR @ "`date +"%H:%M:%S"`" :"
173	jmc	1.15	( cd $gcmDIR ; git pull ) 2>&1
174	jmc	1.11	retVal=$?
175			if test "x$retVal" != x0 ; then
176			echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
177	jmc	1.1	exit
178			fi
179	jmc	1.30	echo " and checkout master @ "`date +"%H:%M:%S"`" :"
180	jmc	1.15	( cd $gcmDIR ; git checkout master -- . ) 2>&1
181	jmc	1.14	if test "x$addExp" != x ; then
182	jmc	1.30	echo "Update $git_other code in dir $gcmDIR/$git_other @ "`date +"%H:%M:%S"`" :"
183	jmc	1.15	( cd $gcmDIR/$git_other ; git pull ) 2>&1
184	jmc	1.14	retVal=$?
185			if test "x$retVal" != x0 ; then
186			echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit"
187			exit
188			fi
189	jmc	1.30	echo " and checkout master @ "`date +"%H:%M:%S"`" :"
190	jmc	1.15	( cd $gcmDIR/$git_other ; git checkout master -- . ) 2>&1
191	jmc	1.1	fi
192			fi
193	jmc	1.14
194	jmc	1.1	if [ $checkOut -eq 2 ] ; then
195			if test -e $gcmDIR ; then
196			echo -n "Removing working copy: $gcmDIR ..."
197			rm -rf $gcmDIR
198			echo " done"
199			fi
200	jmc	1.14	echo "Make a clone of $git_code from repo: $git_repo ..."
201	jmc	1.13	git clone $git_repo/${git_code}.git $gcmDIR 2> $tmpFil
202	jmc	1.11	retVal=$?
203			if test $retVal = 0 ; then
204			echo ' done' ; rm -f $tmpFil
205			else
206			echo " Error: 'git clone' returned: $retVal"
207			cat $tmpFil ; rm -f $tmpFil
208	jmc	1.1	exit
209	jmc	1.11	fi
210	jmc	1.14	if test "x$addExp" != x ; then
211			echo "Make a clone of $git_other from repo: $git_repo ..."
212			( cd $gcmDIR ; git clone $git_repo/${git_other}.git 2> $tmpFil )
213			retVal=$?
214			if test $retVal = 0 ; then
215			echo ' done' ; rm -f $tmpFil
216			else
217			echo " Error: 'git clone' returned: $retVal"
218			cat $tmpFil ; rm -f $tmpFil
219			exit
220			fi
221			fi
222	jmc	1.1	if test -d $gcmDIR/verification ; then
223			/usr/bin/find $gcmDIR -type d \| xargs chmod g+rxs
224			/usr/bin/find $gcmDIR -type f \| xargs chmod g+r
225			fi
226			fi
227
228	jmc	1.18	#- change dir to $gcmDIR/verification + add link for additional experiments:
229	jmc	1.1	if test -e $gcmDIR/verification ; then
230			if [ $checkOut -lt 2 ] ; then
231			echo " dir $gcmDIR/verification exist" ; fi
232			cd $gcmDIR/verification
233			for exp2add in $addExp ; do
234	jmc	1.14	test -r $exp2add && /bin/rm -rf $exp2add
235			if test -d ../$git_other/$exp2add ; then
236			echo " add $exp2add link from $git_other"
237			ln -s ../$git_other/$exp2add .
238	jmc	1.1	else
239	jmc	1.14	echo " missing dir: $git_other/$exp2add"
240			continue
241	jmc	1.1	fi
242			done
243			else
244			echo "no dir: $gcmDIR/verification => exit"
245			exit
246			fi
247
248	jmc	1.23	if [ $dblTr -eq 1 ] ; then
249	jmc	1.27	echo ''
250	jmc	1.9	#- 0) just make all module header ( *__genmod.mod files) using modified Makefile
251			# <-- skip this step
252			#- 1) just compile ("-nr"), using "-j 4" to speed up
253	jmc	1.27	echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
254	jmc	1.9	-j 4 -nr -odir ${dNam}-$sfx
255	jmc	1.27	./testreport $options -of $OPTFILE -skd "$skipExp" \
256	jmc	1.9	-j 4 -nr -odir ${dNam}-$sfx
257			nFc=`grep -c '^Y . N N ' tr_out.txt`
258			echo " <= fail to compile $nFc experiments"
259	jmc	1.23	options="$options -q"
260	jmc	1.10	fi
261	jmc	1.9
262	jmc	1.29	if [ $dblTr -ge 0 ] ; then
263	jmc	1.9	echo ''
264			#- 2) run and report results ; also finish to compile those who failed with "-j"
265	jmc	1.5	#echo ./testreport $options -of $OPTFILE -command \'$mpiCMD\' -mf $MPI_MFile \
266	jmc	1.27	echo ./testreport $options -of $OPTFILE -skd \'$skipExp\' \
267	jmc	1.23	-odir ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
268	jmc	1.5	#./testreport $options -of $OPTFILE -command "$mpiCMD" -mf $MPI_MFile \
269	jmc	1.27	./testreport $options -of $OPTFILE -skd "$skipExp" \
270	jmc	1.23	-odir ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
271	jmc	1.28	retVal=$?
272	jmc	1.29	else retVal=0 ; fi
273	jmc	1.1
274	jmc	1.28	if test "x$retVal" != x0 ; then
275			echo "<== testreport returned retVal=${retVal}, expecting 0"
276			echo " -> skip restart test 'do_tst_2+2'"
277			else
278	jmc	1.1	echo ''
279	jmc	1.9	#- 3) test restart and report results
280	jmc	1.5	#echo ../tools/do_tst_2+2 -mpi -exe \'$mpiCMD\' -mf $MPI_MFile \
281			echo ../tools/do_tst_2+2 -mpi \
282	jmc	1.10	-o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org
283	jmc	1.5	#../tools/do_tst_2+2 -mpi -exe "$mpiCMD" -mf $MPI_MFile \
284			../tools/do_tst_2+2 -mpi \
285	jmc	1.10	-o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org
286	jmc	1.28	fi