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jmc |
1.1 |
#!/bin/bash |
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#SBATCH -J gfoAdm_tst |
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#SBATCH -p sched_mit_hill |
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#SBATCH --mem-per-cpu 4000 |
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jmc |
1.2 |
#SBATCH -N 2 |
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# #SBATCH --exclusive |
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jmc |
1.1 |
#SBATCH --tasks-per-node 16 |
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jmc |
1.5 |
#SBATCH -x node[360,365] |
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jmc |
1.1 |
#SBATCH -e /home/jm_c/test_engaging/output/gfoAdm_tst.stderr |
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#SBATCH -o /home/jm_c/test_engaging/output/gfoAdm_tst.stdout |
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jmc |
1.4 |
#SBATCH --no-requeue |
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#SBATCH --constraint=centos6 |
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jmc |
1.1 |
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jmc |
1.7 |
# $Header: /u/gcmpack/MITgcm_contrib/test_scripts/engaging/test_engag_gfo_adm,v 1.6 2021/04/20 04:30:45 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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dNam='engaging' |
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HERE="$HOME/test_$dNam" |
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OUTP="$HERE/output"; SavD="$HERE/send" |
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jmc |
1.7 |
SEND="ssh eofe8 $SavD/mpack" |
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jmc |
1.1 |
TST_DIR="/pool001/jm_c/test_$dNam" |
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tmpFil="/tmp/"`basename $0`".$$" |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q' |
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#- which GitHub repository to use and how to access it: |
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git_repo='MITgcm'; git_code='MITgcm' ; git_other='verification_other' |
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#git_repo='altMITgcm'; #git_code='MITgcm66h' |
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#-- |
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git_repo="https://github.com/$git_repo" |
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#git_repo="git://github.com/$git_repo" |
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#git_repo="git@github.com:$git_repo" |
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jmc |
1.6 |
dblTr=0 ; typ='' ; addExp='' ; skipExp='' |
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sfx='gfoAdm'; typ='-adm' ; dblTr=1 |
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jmc |
1.1 |
addExp="$addExp global_oce_cs32 global_oce_llc90" |
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module add slurm |
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module add gcc |
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module add mvapich2/gcc/64/2.0b |
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#module add openmpi/gcc |
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export MPI_INC_DIR="$MPI_HOME/include" |
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#- for NetCDF: |
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module add harvard/centos6/hdf5-1.8.11_gcc-4.4.7 |
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module add harvard/centos6/netcdf-4.3.0_gcc-4.4.7 |
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OPTFILE="../tools/build_options/linux_amd64_gfortran" |
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jmc |
1.2 |
options="$typ -MPI 32" |
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jmc |
1.1 |
ulimit -s unlimited |
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#- need this to get "staf": |
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export PATH="$PATH:$HOME/bin" |
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gcmDIR="MITgcm_$sfx" |
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dAlt=`date +%d` ; dAlt=`expr $dAlt % 3` |
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if [ $dAlt -eq 1 ] ; then options="$options -fast" |
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else options="$options -devel" ; fi |
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checkOut=1 ; #options="$options -do" |
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#options="$options -nc" ; checkOut=1 |
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jmc |
1.6 |
#options="$options -q" ; checkOut=0 ; dblTr=0 |
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jmc |
1.1 |
|
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if test -d $TST_DIR ; then |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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else |
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#if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi |
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#if test ! -d $TST_DIR ; then |
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# echo "ERROR: Can't create directory \"$TST_DIR\"" |
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# exit 1 |
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#fi |
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#echo "start in new dir TST_DIR='$TST_DIR' at: "`date` |
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echo "ERROR: missing directory \"$TST_DIR\"" |
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exit 1 |
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fi |
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cd $TST_DIR |
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pwd |
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jmc |
1.5 |
df . |
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jmc |
1.1 |
|
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NSLOTS=$SLURM_NTASKS |
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THEDATE=`date` |
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echo '********************************************************************************' |
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echo 'Start job '$THEDATE |
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echo 'NSLOTS = '$NSLOTS |
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echo '======= NODELIST ===============================================================' |
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echo $SLURM_NODELIST |
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cat /etc/redhat-release |
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echo '======= env ====================================================================' |
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env | grep SLURM |
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echo '======= modules ================================================================' |
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module list 2>&1 |
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echo '================================================================================' |
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#- keep a copy of MPI_MFILE: |
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#cp -p $PBS_NODEFILE $OUTP"/mf_"$sfx |
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#- check for disk space: relative space (99%) or absolute (10.G): |
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dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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if [ $dsp -gt 99 ] ; then |
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#dsp=`df -P . | tail -1 | awk '{print $4}'` |
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#if [ $dsp -le 100000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test ! -e $gcmDIR/.git/config ; then |
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echo "no file: $gcmDIR/.git/config => try to download a fresh clone" |
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checkOut=2 |
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fi |
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if test "x$addExp" != x ; then |
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if test ! -e $gcmDIR/$git_other/.git/config ; then |
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echo "no file: $gcmDIR/$git_other/.git/config => try a fresh clone" |
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checkOut=2 |
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fi |
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fi |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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echo "cleaning output from $gcmDIR/verification :" |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$retVal) but continue" |
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fi |
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fi |
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done ) |
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echo "clean testreport output" |
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# echo "clean tst_2+2 + testreport output (+ Makefile_syntax files)" |
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# ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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( cd $gcmDIR/verification ; ./testreport $typ -clean ) |
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if test "x$addExp" != x ; then |
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( cd $gcmDIR/verification |
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listD=`ls -o | grep '^l' | awk '{print $8}' 2> /dev/null` |
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echo " + remove local links: $listD" |
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/bin/rm -f $listD |
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) |
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fi |
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echo "Update $git_code code in dir $gcmDIR :" |
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( cd $gcmDIR ; git pull ) 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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echo " and checkout master:" |
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( cd $gcmDIR ; git checkout master -- . ) 2>&1 |
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if test "x$addExp" != x ; then |
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echo "Update $git_other code in dir $gcmDIR/$git_other :" |
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( cd $gcmDIR/$git_other ; git pull ) 2>&1 |
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retVal=$? |
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if test "x$retVal" != x0 ; then |
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echo "git pull on '"`hostname`"' fail (return val=$retVal) => exit" |
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exit |
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fi |
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echo " and checkout master:" |
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( cd $gcmDIR/$git_other ; git checkout master -- . ) 2>&1 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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echo -n "Removing working copy: $gcmDIR ..." |
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rm -rf $gcmDIR |
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echo " done" |
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fi |
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echo "Make a clone of $git_code from repo: $git_repo ..." |
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git clone $git_repo/${git_code}.git $gcmDIR 2> $tmpFil |
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retVal=$? |
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if test $retVal = 0 ; then |
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echo ' done' ; rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil ; rm -f $tmpFil |
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exit |
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fi |
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if test "x$addExp" != x ; then |
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echo "Make a clone of $git_other from repo: $git_repo ..." |
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( cd $gcmDIR ; git clone $git_repo/${git_other}.git 2> $tmpFil ) |
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retVal=$? |
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if test $retVal = 0 ; then |
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echo ' done' ; rm -f $tmpFil |
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else |
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echo " Error: 'git clone' returned: $retVal" |
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cat $tmpFil ; rm -f $tmpFil |
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exit |
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fi |
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fi |
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if test -d $gcmDIR/verification ; then |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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fi |
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fi |
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#- change dir to $gcmDIR/verification + add link for additional experiments: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
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for exp2add in $addExp ; do |
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test -r $exp2add && /bin/rm -rf $exp2add |
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if test -d ../$git_other/$exp2add ; then |
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echo " add $exp2add link from $git_other" |
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ln -s ../$git_other/$exp2add . |
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if test $exp2add = 'global_oce_cs32' ; then |
| 218 |
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echo " link dir 'other_input/core2_cnyf' in here" |
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( cd ../${git_other}/${exp2add} |
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test -L core2_cnyf && /bin/rm -f core2_cnyf |
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ln -s ../../../other_input/core2_cnyf . ) |
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fi |
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if test $exp2add = 'global_oce_llc90' ; then |
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echo " link dir 'other_input/gael_oce_llc90_input' to 'input_fields'" |
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( cd ../${git_other}/${exp2add} |
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test -L input_fields && /bin/rm -f input_fields |
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ln -s ../../../other_input/gael_oce_llc90_input input_fields |
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echo " link dirs: 'core2_cnyf' & 'global_oce_input_fields/*' in input_verifs" |
| 229 |
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test ! -e input_verifs && mkdir input_verifs |
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( cd input_verifs ; /bin/rm -f * |
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ln -s ../../../../other_input/core2_cnyf . |
| 232 |
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ln -s ../../../../other_input/global_oce_input_fields/* . ) |
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) |
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fi |
| 235 |
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else |
| 236 |
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echo " missing dir: $git_other/$exp2add" |
| 237 |
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continue |
| 238 |
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fi |
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done |
| 240 |
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else |
| 241 |
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echo "no dir: $gcmDIR/verification => exit" |
| 242 |
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exit |
| 243 |
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fi |
| 244 |
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| 245 |
jmc |
1.6 |
if [ $dblTr -eq 1 ] ; then |
| 246 |
jmc |
1.1 |
echo '' |
| 247 |
jmc |
1.6 |
echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx -nr |
| 248 |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx -nr |
| 249 |
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options="$options -q" |
| 250 |
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fi |
| 251 |
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| 252 |
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echo '' |
| 253 |
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echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
| 254 |
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-send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 255 |
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./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ |
| 256 |
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-send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 257 |
jmc |
1.1 |
|
| 258 |
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# echo '' |
| 259 |
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# echo ../tools/do_tst_2+2 -mpi \ |
| 260 |
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# -o ${dNam}-$sfx -send \'$SEND\' -sd $SavD -a jm_c@mitgcm.org |
| 261 |
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# ../tools/do_tst_2+2 -mpi \ |
| 262 |
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# -o ${dNam}-$sfx -send "$SEND" -sd $SavD -a jm_c@mitgcm.org |
| 263 |
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