| 1 |
edhill |
1.1 |
#!/bin/bash |
| 2 |
|
|
# |
| 3 |
|
|
# o -N Job Name |
| 4 |
|
|
#PBS -N eh3_g77 |
| 5 |
|
|
# |
| 6 |
|
|
# o -l ask for 3 nodes, each with the attribute "p4". |
| 7 |
|
|
#PBS -l nodes=2:p4 |
| 8 |
|
|
# |
| 9 |
|
|
# o Where to write output |
| 10 |
|
|
#PBS -e /cluster/home/edhill/err_g77 |
| 11 |
|
|
#PBS -o /cluster/home/edhill/out_g77 |
| 12 |
|
|
# |
| 13 |
|
|
# o Export all my environment variables to the job |
| 14 |
|
|
#PBS -V |
| 15 |
|
|
# |
| 16 |
|
|
|
| 17 |
|
|
VENDOR=g77 |
| 18 |
|
|
MF="mf_"$VENDOR |
| 19 |
|
|
RUNIT="runit_"$VENDOR |
| 20 |
|
|
cd ~edhill |
| 21 |
|
|
HERE=`pwd` |
| 22 |
|
|
cat $PBS_NODEFILE > $MF |
| 23 |
|
|
NCPU=`wc -l $MF | awk '{print $1}'` |
| 24 |
|
|
MPI="/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/"$VENDOR"/bin/mpirun.ch_gm" |
| 25 |
|
|
EXE="$MPI -machinefile $HERE/$MF --gm-kill 5 -v -np $NCPU ./mitgcmuv" |
| 26 |
|
|
|
| 27 |
|
|
cat << EOF > $RUNIT |
| 28 |
|
|
#!/bin/bash |
| 29 |
|
|
|
| 30 |
|
|
$EXE |
| 31 |
|
|
|
| 32 |
|
|
cp STDOUT.0000 output.txt |
| 33 |
|
|
|
| 34 |
|
|
EOF |
| 35 |
|
|
chmod a+x $RUNIT |
| 36 |
|
|
|
| 37 |
|
|
COMMAND="$HERE/$RUNIT" |
| 38 |
|
|
|
| 39 |
|
|
# cat << EOF > $HERE"/.cvspass" |
| 40 |
edhill |
1.3 |
# /1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0= |
| 41 |
edhill |
1.1 |
# EOF |
| 42 |
edhill |
1.3 |
TDIR="/SCRATCH/s01/edhill/tmp_"$VENDOR |
| 43 |
edhill |
1.1 |
if test -e $TDIR ; then |
| 44 |
|
|
rm -rf $TDIR |
| 45 |
|
|
fi |
| 46 |
|
|
mkdir $TDIR |
| 47 |
|
|
cd $TDIR |
| 48 |
edhill |
1.3 |
cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co MITgcm |
| 49 |
|
|
# cvs co MITgcm |
| 50 |
edhill |
1.1 |
cd MITgcm/verification |
| 51 |
|
|
OPTFILE="../tools/build_options/linux_ia32_"$VENDOR"+mpi_cg01" |
| 52 |
|
|
./testreport -mpi -of $OPTFILE -command $COMMAND -a 'edhill@mitgcm.org' |
| 53 |
|
|
|
| 54 |
|
|
|