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Instructions for setting up a 1/16-deg integration on pleiades. |
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########################################################################## |
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# getting the code from anonymous CVS server |
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cvs co MITgcm_contrib/quarter_degree_global |
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cvs co MITgcm_code |
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cvs co MITgcm/verification/global_with_exf |
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cvs co MITgcm/verification/tutorial_global_oce_latlon |
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############################################################################# |
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# 1-CPU verification/global_with_exf including pkg/diagnostics |
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cd MITgcm/verification/global_with_exf/build |
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\rm * |
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\cp ../code/* . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test1 . |
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\mv SIZE.h_test1 SIZE.h |
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../../../tools/genmake2 |
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make depend |
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make -j 8 |
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cd ../run |
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\rm * |
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\cp ../build/mitgcmuv . |
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\ln -sf ../../tutorial_global_oce_latlon/input/*.bin . |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics . |
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./mitgcmuv >& output.txt |
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|
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there is comparison output in |
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../../../../MITgcm_contrib/quarter_degree_global/results/output.txt |
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|
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########################################################################## |
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# mpi test verification/global_with_exf including pkg/diagnostics on pleiades |
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cd MITgcm/verification/global_with_exf/build |
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\rm * |
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\cp ../code/* . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test . |
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\mv SIZE.h_test SIZE.h |
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../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_ice_nas |
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make depend |
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make -j 8 |
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cd ../run |
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\rm * |
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\cp ../build/mitgcmuv . |
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\ln -sf ../../tutorial_global_oce_latlon/input/*.bin . |
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\cp ../input/* . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics . |
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qsub -I -lselect=1:ncpus=2 |
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module load modules comp/intel/10.1.011_64 mpi/mpt.1.20+patch10520 |
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mpiexec -n 2 ./mitgcmuv |
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|
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there is comparison output in |
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../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000 |
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########################################################################## |
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# 5760x4352 480-cpu (96x60)x(136x32) 1/16-deg integration on altix. |
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# Requires input files in sudirectory iter69 to be at same level as MITgcm |
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# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on |
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# columbia18:/nobackup18/menemenl/sixteen |
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|
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cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_16_1920 SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../exe |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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\cp data.exf_clim_16 data.exf_clim |
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\cp data_NCEP_16 data |
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\cp ../bin/mitgcmuv mitgcmuv1920 |
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scp eedata data* mitgcm* columbia17:/nobackup/menemenl/sixteen/MITgcm/exe |
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scp eedata data* mitgcm* columbia19:/nobackup/menemenl/sixteen/MITgcm/exe |
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scp eedata data* mitgcm* columbia20:/nobackup/menemenl/sixteen/MITgcm/exe |
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 505 runon 4-511 mitgcmuv1920 : \ |
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c17 505 runon 4-509 mitgcmuv1920 : \ |
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c19 440 runon 4-447 mitgcmuv1920 : \ |
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c20 470 runon 4-447 mitgcmuv1920 \ |
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< /dev/null >&! output.run & |
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|
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 500 runon 4-503 mitgcmuv1632 : \ |
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c17 500 runon 4-503 mitgcmuv1632 : \ |
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c19 316 runon 4-419 mitgcmuv1632 : \ |
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c20 316 runon 4-419 mitgcmuv1632 \ |
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< /dev/null >&! output.run & |
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|
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 500 runon 4-503 mitgcmuv1440 : \ |
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c17 500 runon 4-503 mitgcmuv1440 : \ |
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c19 440 runon 4-443 mitgcmuv1440 \ |
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< /dev/null >&! output.run & |
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|
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cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_16_1440 SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../exe |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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\cp data.exf_clim_16 data.exf_clim |
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\cp data_NCEP_16 data |
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\cp ../bin/mitgcmuv mitgcmuv1440 |
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scp eedata data* mitgcm* columbia18:/nobackup/menemenl/sixteen/MITgcm/exe |
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scp eedata data* mitgcm* columbia20:/nobackup/menemenl/sixteen/MITgcm/exe |
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c19 460 runon 4-511 mitgcmuv1440 : \ |
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c18 505 runon 4-511 mitgcmuv1440 : \ |
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c20 475 runon 4-479 mitgcmuv1440 \ |
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< /dev/null >&! output.run & |
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|
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scp eedata data* mitgcm* columbia19:/nobackup/menemenl/sixteen/MITgcm/exe |
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scp eedata data* mitgcm* columbia20:/nobackup/menemenl/sixteen/MITgcm/exe |
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 507 runon 4-511 mitgcmuv1360 : \ |
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c19 443 runon 4-447 mitgcmuv1360 : \ |
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c20 410 runon 4-415 mitgcmuv1360 \ |
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< /dev/null >&! output.run & |
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|
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cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_16_960 SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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cd ../exe |
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\rm * |
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\cp ../bin/mitgcmuv mitgcmuv960 |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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\cp data.exf_clim_16 data.exf_clim |
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\cp data_NCEP_16 data |
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scp data* mitgcm* columbia17:/nobackup/menemenl/sixteen/MITgcm/exe |
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 480 runon 4-511 mitgcmuv960 : \ |
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c17 480 runon 4-511 mitgcmuv960 \ |
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< /dev/null >&! output.run & |
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|
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/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/sixteen/MITgcm/exe \ |
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c18 500 runon 4-503 mitgcmuv816 : \ |
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c19 316 runon 4-319 mitgcmuv816 \ |
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< /dev/null >&! output.run & |
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18 4-509 |
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17 4-511 |
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19 4-478 |
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20 4-447 |
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