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Instructions for setting up a 1/8-deg integration with |
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bulk formulae and sea-ice, starting from 2000 spin-up. |
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########################################################################## |
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# getting the code from anonymous CVS server |
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cvs co MITgcm_contrib/quarter_degree_global |
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cvs co -r checkpoint57q_post MITgcm_code |
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########################################################################## |
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# 2880x2176 480-cpu (96x30)x(136x16) 1/8-deg integration on altix. |
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# Requires input files in sudirectory ncep_rgau to be at same level as |
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# MITgcm and MITgcm_contrib. |
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module purge |
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module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.12.0.nas |
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setenv MPI_DSM_DISTRIBUTE |
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cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_8_480 SIZE.h |
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\cp packages.conf_bulk packages.conf |
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\cp ECCO_CPPOPTIONS.h_bulk ECCO_CPPOPTIONS.h |
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\cp CPP_OPTIONS.h_bulk CPP_OPTIONS.h |
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\cp DIAGNOSTICS_SIZE.h_bulk DIAGNOSTICS_SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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make -j |
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\cp mitgcmuv ../exe/mitgcmuv480 |
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cd ../exe |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\cp data_bulk_8 data |
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\cp data.pkg_bulk data.pkg |
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\cp data.exf_clim_bulk data.exf_clim |
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\cp data.exf_bulk data.exf |
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\cp data.diagnostics_bulk data.diagnostics |
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ln -sf /nobackup/menemenl/cube/run_template/LEV01_SSS_360x180x12.bin . |
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ln -sf ../../iter69/bathymetry2880x2176.bin . |
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ln -sf ../../iter69/pickup_seaice.1jan00 pickup_seaice.0001262304 |
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ln -sf ../../iter69/pickup.ncep.1jan00 pickup.0001262304 |
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./modpickup_8 |
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mpirun -v -a a2k c20 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv480 \ |
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< /dev/null >&! output.run & |
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###################################################################### |
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# 2880x2176 960-cpu (96x30)x(136x16) 1/8-deg integration on altix. |
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cd ../bin |
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module purge |
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module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.12.0.nas |
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setenv MPI_DSM_DISTRIBUTE |
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\cp SIZE.h_8_960 SIZE.h |
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make -j |
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\cp mitgcmuv ../exe/mitgcmuv960 |
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./modpickup_8 |
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scp eedata data* mitg* c19:/nobackup/menemenl/eighth/MITgcm/exe |
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mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \ |
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c20 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv960 : \ |
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c19 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv960 \ |
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< /dev/null >&! output.run & |
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