Instructions for setting up a 1/8-deg integration with
bulk formulae and sea-ice, starting from 2000 spin-up.

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# getting the code from anonymous CVS server

cvs co MITgcm_contrib/quarter_degree_global
cvs co -r checkpoint57q_post MITgcm_code

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# 2880x2176 480-cpu (96x30)x(136x16) 1/8-deg integration on altix.
# Requires input files in sudirectory ncep_rgau to be at same level as
# MITgcm and MITgcm_contrib.
module purge
module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.12.0.nas
setenv MPI_DSM_DISTRIBUTE
cd MITgcm
mkdir bin exe
cd bin
\rm *
\cp ../../MITgcm_contrib/quarter_degree_global/code/* .
\cp SIZE.h_8_480 SIZE.h
\cp packages.conf_bulk packages.conf
\cp ECCO_CPPOPTIONS.h_bulk ECCO_CPPOPTIONS.h
\cp CPP_OPTIONS.h_bulk CPP_OPTIONS.h
\cp DIAGNOSTICS_SIZE.h_bulk DIAGNOSTICS_SIZE.h
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
make depend
make -j
\cp mitgcmuv ../exe/mitgcmuv480
cd ../exe
\cp ../../MITgcm_contrib/quarter_degree_global/input/* .
\cp data_bulk_8 data
\cp data.pkg_bulk data.pkg
\cp data.exf_clim_bulk data.exf_clim
\cp data.exf_bulk data.exf
\cp data.diagnostics_bulk data.diagnostics
ln -sf /nobackup/menemenl/cube/run_template/LEV01_SSS_360x180x12.bin .
ln -sf ../../iter69/bathymetry2880x2176.bin .
ln -sf ../../iter69/pickup_seaice.1jan00 pickup_seaice.0001262304
ln -sf ../../iter69/pickup.ncep.1jan00 pickup.0001262304
./modpickup_8
mpirun -v -a a2k c20 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv480 \
                 < /dev/null >&! output.run &


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# 2880x2176 960-cpu (96x30)x(136x16) 1/8-deg integration on altix.
cd ../bin
module purge
module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.12.0.nas
setenv MPI_DSM_DISTRIBUTE
\cp SIZE.h_8_960 SIZE.h
make -j
\cp mitgcmuv ../exe/mitgcmuv960
./modpickup_8
scp eedata data* mitg* c19:/nobackup/menemenl/eighth/MITgcm/exe
mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
  c20 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv960 : \
  c19 480 /usr/bin/cpuset -i /PBSPro -I mitgcmuv960 \
                 < /dev/null >&! output.run &