/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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revision 1.20 by dimitri, Tue Dec 14 16:29:59 2004 UTC revision 1.26 by dimitri, Sat Dec 18 05:41:02 2004 UTC
# Line 10  cvs co MITgcm/verification/global_with_e Line 10  cvs co MITgcm/verification/global_with_e
10  cvs co MITgcm/verification/testreport  cvs co MITgcm/verification/testreport
11    
12    
13  ##########################################################################  #############################################################################
14  # mpi test of verification/global_with_exf on columbia  # 1-CPU verification/global_with_exf including pkg/diagnostics
15    
16    examples:
17    aim.5l_cs/input/data.diagnostics  fizhi-gridalt-hs/input/data.diagnostics
18    dome/input/data.diagnostics       hs94.cs-32x32x5/input/data.diagnostics
19    
20    e1=readbin('test_oldstyle/ETAtave.0000000018.data',[90 40]);
21    e2=readbin('ETAN.0000000018.data',[90 40]);
22    e16=readbin('test_oldstyle/Eta.0000000016.data',[90 40]);
23    e17=readbin('test_oldstyle/Eta.0000000017.data',[90 40]);
24    e18=readbin('test_oldstyle/Eta.0000000018.data',[90 40]);
25    minmax(e1-e2)
26    minmax(e2-(e16+e17+e18)/3)
27    
28    e1=readbin('test_oldstyle/sFluxtave.0000000018.data',[90 40]);
29    e2=readbin('SFLUX.0000000018.data',[90 40]);
30    minmax(e1-e2)
31    
32    e1=readbin('test_oldstyle/tFluxtave.0000000018.data',[90 40]);
33    e2=readbin('TFLUX.0000000018.data',[90 40]);
34    minmax(e1-e2)
35    
36    e1=readbin('TRELAX.0000000018.data',[90 40]);
37    subplot(211),mypcolor(e1');colorbar
38    
39    e1=readbin('SRELAX.0000000018.data',[90 40]);
40    subplot(211),mypcolor(e1');colorbar
41    
42    e1=readbin('TICE.0000000018.data',[90 40]);
43    subplot(211),mypcolor(e1');colorbar
44    
45    
46    e1=readbin('test_oldstyle/wVeltave.0000000018.data',[90 40 15]);
47    e2=readbin('WVEL.0000000018.data',[90 40 15]);
48    e16=readbin('test_oldstyle/W.0000000016.data',[90 40 15]);
49    e17=readbin('test_oldstyle/W.0000000017.data',[90 40 15]);
50    e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);
51    minmax(e1-e2)
52    minmax(e2-(e16+e17+e18)/3)
53    
54    
55    
56    
57    
58    
59  cd MITgcm/verification/global_with_exf/build  cd MITgcm/verification/global_with_exf/build
60  \rm *  \rm *
61  \cp ../code/* .  \cp ../code/* .
62    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf .
63    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
64    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
65    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h .
66    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test1 .
67    \mv SIZE.h_test1 SIZE.h
68    ../../../tools/genmake2
69    make depend
70    make -j
71    cd ..
72    mkdir run
73    cd run
74    \rm *
75    \cp ../build/mitgcmuv .
76    \ln -sf ../input/* .
77    \rm data
78    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
79    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg .
80    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp .
81    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics .
82    mitgcmuv >& output.txt
83    
84    
85    there is comparison output in
86    ../../../../MITgcm_contrib/quarter_degree_global/results/output.txt
87    
88    
89    #############################################################################
90    # mpi test verification/global_with_exf including pkg/diagnostics on columbia
91    
92    cd MITgcm/verification/global_with_exf/build
93    \rm *
94    \cp ../code/* .
95    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf .
96  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
97  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
98  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .  \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .
99  \mv SIZE.h_test SIZE.h  \mv SIZE.h_test SIZE.h
100  ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
101  make depend  make depend
102  make -j 4  make -j
103  cd ..  cd ..
104  mkdir run  mkdir run
105  cd run  cd run
# Line 39  there is comparison output in Line 116  there is comparison output in
116    
117  ##########################################################################  ##########################################################################
118  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc
119  # requires input files in sudirectory iter69 to be at same level as MITgcm  # requires input files in subdirectory iter69 to be at same level as MITgcm
120  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
121  # The integration length is 4018 days, 1992-2002.  # The integration length is 4018 days, 1992-2002.
122  # First three days need to be integrated using deltat=200.  # First three days need to be integrated using deltat=200.
# Line 49  mkdir bin exe Line 126  mkdir bin exe
126  cd bin  cd bin
127  \rm *  \rm *
128  \cp ../../MITgcm_contrib/quarter_degree_global/code/* .  \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
129  ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
130  make depend  make depend
131  make -j 4  make -j
132  cd ../exe  cd ../exe
133  \rm *  \rm *
134  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
# Line 76  cd bin Line 153  cd bin
153  \cp SIZE.h_8_480 SIZE.h  \cp SIZE.h_8_480 SIZE.h
154  ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix  ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
155  make depend  make depend
156  make -j 4  make -j
157  cd ../exe  cd ../exe
158  \rm *  \rm *
159  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
# Line 106  cd bin Line 183  cd bin
183  \cp SIZE.h_8_960 SIZE.h  \cp SIZE.h_8_960 SIZE.h
184  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
185  make depend  make depend
186  make -j 4  make -j
187    
188  cd ../exe  cd ../exe
189  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
# Line 132  cd ~/exe Line 209  cd ~/exe
209  \cp data_SIO_8 data  \cp data_SIO_8 data
210  \ln -sf /tmp/eighth/MITgcm/exe/pick* .  \ln -sf /tmp/eighth/MITgcm/exe/pick* .
211    
212  mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : c20 480 runon 4-511 mitgcmuv960 >&! output.txt &  mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : \
213                                 c20 480 runon 4-511 mitgcmuv960 >&! output.txt &
214    
215    \cp data.test data
216    scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe
217    scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe
218    scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe
219    mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
220                     c18 480 runon 4-511 mitgcmuv1440 : \
221                     c19 480 runon 4-511 mitgcmuv1440 : \
222                     c20 480 runon 4-511 mitgcmuv1440   \
223                                >&! output.test1440
224    mkdir tests
225    mv STDOUT.0000 output.test1440 tests/stdout1440
226    \rm STD*
227    mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
228                     c17 480 runon 14-511 mitgcmuv1920 : \
229                     c18 480 runon 14-511 mitgcmuv1920 : \
230                     c19 480 runon 14-511 mitgcmuv1920 : \
231                     c20 480 runon 14-511 mitgcmuv1920   \
232                                >&! output.test1920
233    mv STDOUT.0000 output.test1920 tests/stdout1920
234    \rm STD*
235    \cp data.run data
236    scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe
237    scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe
238    scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe
239    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
240                     -d /nobackup/menemenl/eighth/MITgcm/exe \
241                     c17 480 runon 9-511 mitgcmuv1920 : \
242                     c18 480 runon 9-511 mitgcmuv1920 : \
243                     c19 480 runon 9-511 mitgcmuv1920 : \
244                     c20 480 runon 9-511 mitgcmuv1920   \
245                                >&! output.run
246    
247    
248    
249    
250    \cp data.test data
251    scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe
252    scp data columbia20:/nobackup/menemenl/eighth/MITgcm/exe
253    mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
254                     c18 480 runon 9-511 mitgcmuv1440 : \
255                     c19 480 runon 9-511 mitgcmuv1440 : \
256                     c20 480 runon 9-511 mitgcmuv1440   \
257                                >&! output.test1440
258    mkdir tests
259    mv STDOUT.0000 output.test1440 tests/stdout1440
260    \rm STD*
261    \cp data.run data
262    scp data columbia17:/nobackup/menemenl/eighth/MITgcm/exe
263    scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe
264    mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \
265                     c17 480 runon 9-511 mitgcmuv1440 : \
266                     c18 480 runon 9-511 mitgcmuv1440 : \
267                     c19 480 runon 9-511 mitgcmuv1440   \
268                                >&! output.run
269    
270    
271    
272    
# Line 177  fails: Line 311  fails:
311  <   viscA4GridMin=2e-3,  <   viscA4GridMin=2e-3,
312  <   viscA4GridMax=1e-2,  <   viscA4GridMax=1e-2,
313  <   viscC4Leith=0.2,  <   viscC4Leith=0.2,
314  try:  fails:
315  <   viscA4GridMin=4e-3,  <   viscA4GridMin=4e-3,
316  <   viscA4GridMax=8e-3,  <   viscA4GridMax=8e-3,
317  <   viscC4Leith=0.2,  <   viscC4Leith=0.2,
318    fails:
319      viscA4GridMin=5e-3,
320      viscA4GridMax=1e-2,
321      viscC4Leith=.2,
322    starting with time step 50112, try:
323    (this mean day 174 becomes day 116)
324      viscA4GridMin=6.e-4,
325      viscA4GridMax=8.e-3,
326      viscC4Leith=0.1,
327      deltat=200
328    
329    
330  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# Line 210  WRITE_CHECKPOINT    341      333 Line 353  WRITE_CHECKPOINT    341      333
353                               scsl.1.5.0.0                               scsl.1.5.0.0
354                      c18      intel-comp.8.0.070                      c18      intel-comp.8.0.070
355  480-CPU             default  mpt.1.11-85  480-CPU             default  mpt.1.11-85
356  ------------------------------------------------                                        c19 default
357  MAIN LOOP           4024     2917                                                 c17 default, other processes
358  EXF_GETFORCING      218      33                                                          c19 new
359  DO_OCEANIC_PHYS     622      619  -------------------------------------------------------------------------
360  STATEKPP            269      265  MAIN LOOP           4024     2917     5379     8895     3571
361  KPPMIX              190      188  EXF_GETFORCING      218      33       880      261      227
362  DYNAMICS            747      718  DO_OCEANIC_PHYS     622      619      621      913      620
363  SOLVE_FOR_PRESSURE  966      119  STATEKPP            269      265      268      310      265
364  BLOCKING_EXCHANGES  64       70  KPPMIX              190      188      189      291      189
365  THERMODYNAMICS      553      582  DYNAMICS            747      718      745      1456     714
366  DO_THE_MODEL_IO     178      156  SOLVE_FOR_PRESSURE  966      119      1703     2748     900
367  WRITE_CHECKPOINT    364      332  BLOCKING_EXCHANGES  64       70       392      375      70
368    THERMODYNAMICS      553      582      566      1510     584
369    DO_THE_MODEL_IO     178      156      149      184      152
370    WRITE_CHECKPOINT    364      332      864      420      333
371    
372    
373    
374                      240-CPU  480-CPU  960-CPU  CPU                 240     480     960     1440    1920
375  ------------------------------------------------  -------------------------------------------------------------
376  MAIN LOOP           5066     2917     2227  MAIN LOOP           5066    2917    2227    1551    1276
377  EXF_GETFORCING      38       33       126  EXF_GETFORCING      38      33      126     60      83
378  DO_OCEANIC_PHYS     1272     619      320  DO_OCEANIC_PHYS     1272    619     320     390     186
379  STATEKPP            532      265      138  STATEKPP            532     265     138     181     77
380  KPPMIX              374      188      98  KPPMIX              374     188     98      112     53
381  DYNAMICS            1429     718      313  DYNAMICS            1429    718     313     319     173
382  SOLVE_FOR_PRESSURE  206      119      483  SOLVE_FOR_PRESSURE  206     119     483     169     310
383  BLOCKING_EXCHANGES  115      70       53  BLOCKING_EXCHANGES  115     70      53      29      28
384  THERMODYNAMICS      1100     582      294  THERMODYNAMICS      1100    582     294     279     172
385  DO_THE_MODEL_IO     177      156      131  DO_THE_MODEL_IO     177     156     131     202     155
386  WRITE_CHECKPOINT    333      332      302  WRITE_CHECKPOINT    333     332     302     524     352
387    
388    
389    4 clusters
390    Dec 16 08:17 Ttave.0000051840.data
391    Dec 16 08:47 Ttave.0000053136.data
392    Dec 16 09:17 Ttave.0000054432.data
393    Dec 16 09:53 Ttave.0000055728.data
394    Dec 17 14:08 Ttave.0000075168.data
395    Dec 17 14:33 Ttave.0000076464.data
396    Dec 17 14:58 Ttave.0000077760.data
397    Dec 17 15:29 Ttave.0000079056.data
398    
399    1 cluster
400    Dec 16 22:14 Ttave.0000059616.data
401    Dec 16 23:16 Ttave.0000060912.data
402    Dec 17 00:19 Ttave.0000062208.data
403    Dec 17 01:27 Ttave.0000063504.data
404    Dec 17 02:29 Ttave.0000064800.data
405    Dec 17 03:31 Ttave.0000066096.data
406    Dec 17 04:39 Ttave.0000067392.data
407    Dec 17 05:42 Ttave.0000068688.data
408    Dec 17 06:44 Ttave.0000069984.data
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