/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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revision 1.3 by dimitri, Tue Nov 30 01:59:56 2004 UTC revision 1.14 by dimitri, Mon Dec 13 15:04:00 2004 UTC
# Line 6  forced 1. by NCEP fields and 2. by SIO f Line 6  forced 1. by NCEP fields and 2. by SIO f
6    
7  cvs co MITgcm_contrib/quarter_degree_global  cvs co MITgcm_contrib/quarter_degree_global
8  cvs co MITgcm_code  cvs co MITgcm_code
9    cvs co MITgcm/verification/global_with_exf
10    cvs co MITgcm/verification/testreport
11    
12    
13    ##########################################################################
14    # mpi test of verification/global_with_exf on columbia
15    
16    cd MITgcm/verification/global_with_exf/build
17    \rm *
18    \cp ../code/* .
19    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
20    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
21    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .
22    \mv SIZE.h_test SIZE.h
23    ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
24    make depend
25    make -j 4
26    cd ..
27    mkdir run
28    cd run
29    \rm *
30    \cp ../build/mitgcmuv .
31    \ln -sf ../input/* .
32    \rm data
33    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
34    mpirun -np 2 mitgcmuv
35    
36    there is comparison output in
37    ../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000
38    
39    
40  ##########################################################################  ##########################################################################
41  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc
42  # requires input files in sudirectory iter69 to be at same level as MITgcm  # requires input files in sudirectory iter69 to be at same level as MITgcm
43  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
44    # The integration length is 4018 days, 1992-2002.
45    # First three days need to be integrated using deltat=200.
46    
47    cd MITgcm
48    mkdir bin exe
49    cd bin
50    \rm *
51    \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
52    ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
53    make depend
54    make -j 4
55    cd ../exe
56    \rm *
57    \cp ../bin/mitgcmuv .
58    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
59    \ln -sf ../../iter69/* .
60    qsub job_altix
61    
62    
63    ##########################################################################
64    # 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc
65    # requires input files in sudirectory iter69 to be at same level as MITgcm
66    # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
67    # columbia18:/nobackup18/menemenl/eight.
68    # The integration length is 3 days.
69    # First three days need to be integrated using deltat=100.
70    
71  cd MITgcm  cd MITgcm
72  mkdir bin exe  mkdir bin exe
73  cd bin  cd bin
74  \rm *  \rm *
75  ../tools/genmake2 -mods=../../MITgcm_contrib/quarter_degree_global/code -of ../tools/build_options/linux_ia64_efc+mpi_altix  \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
76    \cp SIZE.h_8_480 SIZE.h
77    ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
78  make depend  make depend
79  make -j 16  make -j 4
80  cd ../exe  cd ../exe
81  \rm *  \rm *
82  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
83  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
84  \ln -sf ../../iter69/* .  \ln -sf ../../iter69/* .
85    \cp data.exf_clim_8 data.exf_clim
86    \cp data_SIO_8 data
87  qsub job_altix  qsub job_altix
88    
89    
90    ##########################################################################
91    # 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc
92    # requires input files in sudirectory iter69 to be at same level as MITgcm
93    # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
94    # columbia18:/nobackup18/menemenl/eight.
95    # The integration length is 3 days.
96    # First three days need to be integrated using deltat=100.
97    
98    module purge
99    module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85
100    setenv MPI_DSM_DISTRIBUTE
101    cd MITgcm
102    mkdir bin exe
103    cd bin
104    \rm *
105    \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
106    \cp SIZE.h_8_960 SIZE.h
107    ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
108    make depend
109    make -j 4
110    
111    cd ../exe
112    \cp ../bin/mitgcmuv .
113    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
114    \ln -sf ../../iter69/* .
115    \cp data.exf_clim_8 data.exf_clim
116    \cp data_SIO_8 data
117    modpickup_8
118    mpirun -v -a a2k c18 480 runon 4-483 mitgcmuv : c20 480 runon 4-483 mitgcmuv
119    mpirun -v -a a2k c18 508 runon 4-511 mitgcmuv : c20 508 runon 4-511 mitgcmuv
120    
121    on columbia18:
122    ln -sf /nobackup18/menemenl/eighth /tmp/eighth
123    
124    on columbia20:
125    ln -sf /nobackup20/menemenl/eighth /tmp/eighth
126    
127    cd ~/exe
128    \cp /tmp/eighth/MITgcm/exe/mitgcmuv960 .
129    \cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* .
130    \ln -sf /tmp/eighth/iter69/* .
131    \cp data.exf_clim_8 data.exf_clim
132    \cp data_SIO_8 data
133    \ln -sf /tmp/eighth/MITgcm/exe/pick* .
134    
135    mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : c20 480 runon 4-511 mitgcmuv960
136    
137    
138    
139    
140    fails for 1/8
141    >   viscA4GridMin=3.e-4,
142    >   viscA4GridMax=4.e-3,
143    >   viscC4Leith=0.05,
144    >   deltat=300
145    
146    try
147    <   viscA4GridMin=6.e-4,
148    <   viscA4GridMax=8.e-3,
149    <   viscC4Leith=0.1,
150    
151    
152    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
153    
154    1/8 timing tests:
155    
156                                 columbia20
157                                 scsl.1.5.0.0
158                        c18      intel-comp.8.0.070
159    240-CPU             default  mpt.1.11-85
160    ------------------------------------------------
161    MAIN LOOP           7115     5066
162    EXF_GETFORCING      372      38
163    DO_OCEANIC_PHYS     1221     1272
164    STATEKPP            509      532
165    KPPMIX              370      374
166    DYNAMICS            1527     1429
167    SOLVE_FOR_PRESSURE  1804     206
168    BLOCKING_EXCHANGES  117      115
169    THERMODYNAMICS      1166     1100
170    DO_THE_MODEL_IO     173      177
171    WRITE_CHECKPOINT    341      333
172    
173    
174                                 columbia20
175                                 scsl.1.5.0.0
176                        c18      intel-comp.8.0.070
177    480-CPU             default  mpt.1.11-85
178    ------------------------------------------------
179    MAIN LOOP           4024     2917
180    EXF_GETFORCING      218      33
181    DO_OCEANIC_PHYS     622      619
182    STATEKPP            269      265
183    KPPMIX              190      188
184    DYNAMICS            747      718
185    SOLVE_FOR_PRESSURE  966      119
186    BLOCKING_EXCHANGES  64       70
187    THERMODYNAMICS      553      582
188    DO_THE_MODEL_IO     178      156
189    WRITE_CHECKPOINT    364      332
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