Instructions for setting up a quarter degree integration
forced 1. by NCEP fields and 2. by SIO fields.

##########################################################################
# getting the code from anonymous CVS server

cvs co MITgcm_contrib/quarter_degree_global
cvs co MITgcm_code
cvs co MITgcm/verification/global_with_exf
cvs co MITgcm/verification/testreport


##########################################################################
# mpi test of verification/global_with_exf on columbia

cd MITgcm/verification/global_with_exf/build
\rm *
\cp ../code/* .
\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .
\mv SIZE.h_test SIZE.h
../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j 4
cd ..
mkdir run
cd run
\rm *
\cp ../build/mitgcmuv .
\ln -sf ../input/* .
\rm data
\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
mpirun -np 2 mitgcmuv

there is comparison output in
../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000


##########################################################################
# 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc
# requires input files in sudirectory iter69 to be at same level as MITgcm
# and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
# The integration length is 4018 days, 1992-2002.
# First three days need to be integrated using deltat=200.

cd MITgcm
mkdir bin exe
cd bin
\rm *
\cp ../../MITgcm_contrib/quarter_degree_global/code/* .
../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j 4
cd ../exe
\rm *
\cp ../bin/mitgcmuv .
\cp ../../MITgcm_contrib/quarter_degree_global/input/* .
\ln -sf ../../iter69/* .
qsub job_altix


##########################################################################
# 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc
# requires input files in sudirectory iter69 to be at same level as MITgcm
# and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
# columbia18:/nobackup18/menemenl/eight.
# The integration length is 3 days.
# First three days need to be integrated using deltat=100.

cd MITgcm
mkdir bin exe
cd bin
\rm *
\cp ../../MITgcm_contrib/quarter_degree_global/code/* .
\cp SIZE.h_8_480 SIZE.h
../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
make depend
make -j 4
cd ../exe
\rm *
\cp ../bin/mitgcmuv .
\cp ../../MITgcm_contrib/quarter_degree_global/input/* .
\ln -sf ../../iter69/* .
\cp data.exf_clim_8 data.exf_clim
\cp data_SIO_8 data
qsub job_altix




fails for 1/8
>   viscA4GridMin=3.e-4,
>   viscA4GridMax=4.e-3,
>   viscC4Leith=0.05,
>   deltat=300

try
<   viscA4GridMin=6.e-4,
<   viscA4GridMax=8.e-3,
<   viscC4Leith=0.1,