| 58 |
\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
| 59 |
\ln -sf ../../iter69/* . |
\ln -sf ../../iter69/* . |
| 60 |
qsub job_altix |
qsub job_altix |
| 61 |
|
|
| 62 |
|
|
| 63 |
|
########################################################################## |
| 64 |
|
# 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc |
| 65 |
|
# requires input files in sudirectory iter69 to be at same level as MITgcm |
| 66 |
|
# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on |
| 67 |
|
# columbia18:/nobackup18/menemenl/eight. |
| 68 |
|
# The integration length is 3 days. |
| 69 |
|
# First three days need to be integrated using deltat=100. |
| 70 |
|
|
| 71 |
|
cd MITgcm |
| 72 |
|
mkdir bin exe |
| 73 |
|
cd bin |
| 74 |
|
\rm * |
| 75 |
|
\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
| 76 |
|
\cp SIZE.h_8_480 SIZE.h |
| 77 |
|
../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix |
| 78 |
|
make depend |
| 79 |
|
make -j 4 |
| 80 |
|
cd ../exe |
| 81 |
|
\rm * |
| 82 |
|
\cp ../bin/mitgcmuv . |
| 83 |
|
\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
| 84 |
|
\ln -sf ../../iter69/* . |
| 85 |
|
\cp data.exf_clim_8 data.exf_clim |
| 86 |
|
\cp data_SIO_8 data |
| 87 |
|
qsub job_altix |
| 88 |
|
|
| 89 |
|
|
| 90 |
|
########################################################################## |
| 91 |
|
# 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc |
| 92 |
|
# requires input files in sudirectory iter69 to be at same level as MITgcm |
| 93 |
|
# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on |
| 94 |
|
# columbia18:/nobackup18/menemenl/eight. |
| 95 |
|
# The integration length is 3 days. |
| 96 |
|
# First three days need to be integrated using deltat=100. |
| 97 |
|
|
| 98 |
|
module purge |
| 99 |
|
module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85 |
| 100 |
|
setenv MPI_DSM_DISTRIBUTE |
| 101 |
|
cd MITgcm |
| 102 |
|
mkdir bin exe |
| 103 |
|
cd bin |
| 104 |
|
\rm * |
| 105 |
|
\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
| 106 |
|
\cp SIZE.h_8_960 SIZE.h |
| 107 |
|
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
| 108 |
|
make depend |
| 109 |
|
make -j 4 |
| 110 |
|
|
| 111 |
|
cd ../exe |
| 112 |
|
\cp ../bin/mitgcmuv . |
| 113 |
|
\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
| 114 |
|
\ln -sf ../../iter69/* . |
| 115 |
|
\cp data.exf_clim_8 data.exf_clim |
| 116 |
|
\cp data_SIO_8 data |
| 117 |
|
modpickup_8 |
| 118 |
|
mpirun -v -a a2k c18 480 runon 4-483 mitgcmuv : c20 480 runon 4-483 mitgcmuv |
| 119 |
|
mpirun -v -a a2k c18 508 runon 4-511 mitgcmuv : c20 508 runon 4-511 mitgcmuv |
| 120 |
|
|
| 121 |
|
on columbia18: |
| 122 |
|
ln -sf /nobackup18/menemenl/eighth /tmp/eighth |
| 123 |
|
|
| 124 |
|
on columbia20: |
| 125 |
|
ln -sf /nobackup20/menemenl/eighth /tmp/eighth |
| 126 |
|
|
| 127 |
|
cd ~/exe |
| 128 |
|
\cp /tmp/eighth/MITgcm/exe/mitgcmuv960 . |
| 129 |
|
\cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* . |
| 130 |
|
\ln -sf /tmp/eighth/iter69/* . |
| 131 |
|
\cp data.exf_clim_8 data.exf_clim |
| 132 |
|
\cp data_SIO_8 data |
| 133 |
|
\ln -sf /tmp/eighth/MITgcm/exe/pick* . |
| 134 |
|
|
| 135 |
|
mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : c20 480 runon 4-511 mitgcmuv960 >&! output.txt & |
| 136 |
|
|
| 137 |
|
|
| 138 |
|
|
| 139 |
|
fails for 1/8 |
| 140 |
|
> viscA4GridMin=3.e-4, |
| 141 |
|
> viscA4GridMax=4.e-3, |
| 142 |
|
> viscC4Leith=0.05, |
| 143 |
|
> deltat=300 |
| 144 |
|
fails: |
| 145 |
|
< viscA4GridMin=6.e-4, |
| 146 |
|
< viscA4GridMax=8.e-3, |
| 147 |
|
< viscC4Leith=0.1, |
| 148 |
|
fails: |
| 149 |
|
< viscA4GridMin=6.e-4, |
| 150 |
|
< viscA4GridMax=8.e-3, |
| 151 |
|
< viscC4Leith=0.2, |
| 152 |
|
fails: |
| 153 |
|
< viscA4GridMin=1.e-3, |
| 154 |
|
< viscA4GridMax=1.e-2, |
| 155 |
|
< viscC4Leith=0.2, |
| 156 |
|
try: |
| 157 |
|
< viscA4GridMin=1.e-3, |
| 158 |
|
< viscA4GridMax=1.e-2, |
| 159 |
|
< viscC4Leith=0.3, |
| 160 |
|
|
| 161 |
|
|
| 162 |
|
|
| 163 |
|
%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 164 |
|
|
| 165 |
|
1/8 timing tests: |
| 166 |
|
|
| 167 |
|
columbia20 |
| 168 |
|
scsl.1.5.0.0 |
| 169 |
|
c18 intel-comp.8.0.070 |
| 170 |
|
240-CPU default mpt.1.11-85 |
| 171 |
|
------------------------------------------------ |
| 172 |
|
MAIN LOOP 7115 5066 |
| 173 |
|
EXF_GETFORCING 372 38 |
| 174 |
|
DO_OCEANIC_PHYS 1221 1272 |
| 175 |
|
STATEKPP 509 532 |
| 176 |
|
KPPMIX 370 374 |
| 177 |
|
DYNAMICS 1527 1429 |
| 178 |
|
SOLVE_FOR_PRESSURE 1804 206 |
| 179 |
|
BLOCKING_EXCHANGES 117 115 |
| 180 |
|
THERMODYNAMICS 1166 1100 |
| 181 |
|
DO_THE_MODEL_IO 173 177 |
| 182 |
|
WRITE_CHECKPOINT 341 333 |
| 183 |
|
|
| 184 |
|
|
| 185 |
|
columbia20 |
| 186 |
|
scsl.1.5.0.0 |
| 187 |
|
c18 intel-comp.8.0.070 |
| 188 |
|
480-CPU default mpt.1.11-85 |
| 189 |
|
------------------------------------------------ |
| 190 |
|
MAIN LOOP 4024 2917 |
| 191 |
|
EXF_GETFORCING 218 33 |
| 192 |
|
DO_OCEANIC_PHYS 622 619 |
| 193 |
|
STATEKPP 269 265 |
| 194 |
|
KPPMIX 190 188 |
| 195 |
|
DYNAMICS 747 718 |
| 196 |
|
SOLVE_FOR_PRESSURE 966 119 |
| 197 |
|
BLOCKING_EXCHANGES 64 70 |
| 198 |
|
THERMODYNAMICS 553 582 |
| 199 |
|
DO_THE_MODEL_IO 178 156 |
| 200 |
|
WRITE_CHECKPOINT 364 332 |
| 201 |
|
|
| 202 |
|
|
| 203 |
|
|
| 204 |
|
240-CPU 480-CPU 960-CPU |
| 205 |
|
------------------------------------------------ |
| 206 |
|
MAIN LOOP 5066 2917 2227 |
| 207 |
|
EXF_GETFORCING 38 33 126 |
| 208 |
|
DO_OCEANIC_PHYS 1272 619 320 |
| 209 |
|
STATEKPP 532 265 138 |
| 210 |
|
KPPMIX 374 188 98 |
| 211 |
|
DYNAMICS 1429 718 313 |
| 212 |
|
SOLVE_FOR_PRESSURE 206 119 483 |
| 213 |
|
BLOCKING_EXCHANGES 115 70 53 |
| 214 |
|
THERMODYNAMICS 1100 582 294 |
| 215 |
|
DO_THE_MODEL_IO 177 156 131 |
| 216 |
|
WRITE_CHECKPOINT 333 332 302 |
Parent Directory
| 
Revision Log
| 
Revision Graph
| 
Patch