/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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revision 1.30 by dimitri, Mon Dec 20 22:21:07 2004 UTC revision 1.39 by dimitri, Fri Dec 31 15:13:46 2004 UTC
# Line 24  cd MITgcm/verification/global_with_exf/b Line 24  cd MITgcm/verification/global_with_exf/b
24  \mv SIZE.h_test1 SIZE.h  \mv SIZE.h_test1 SIZE.h
25  ../../../tools/genmake2  ../../../tools/genmake2
26  make depend  make depend
27  make -j  make -j 4
28  cd ..  cd ..
29  mkdir run  mkdir run
30  cd run  cd run
# Line 56  cd MITgcm/verification/global_with_exf/b Line 56  cd MITgcm/verification/global_with_exf/b
56  \mv SIZE.h_test SIZE.h  \mv SIZE.h_test SIZE.h
57  ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas
58  make depend  make depend
59  make -j  make -j 4
60  cd ..  cd ..
61  mkdir run  mkdir run
62  cd run  cd run
# Line 72  there is comparison output in Line 72  there is comparison output in
72    
73    
74  ##########################################################################  ##########################################################################
75  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix.
76  # requires input files in subdirectory iter69 to be at same level as MITgcm  # Requires input files in subdirectory iter69 to be at same level as MITgcm
77  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
78  # The integration length is 4018 days, 1992-2002.  # The integration length is 4018 days, 1992-2002.
79  # First three days need to be integrated using deltat=200.  # First three days need to be integrated using deltat=200.
# Line 85  cd bin Line 85  cd bin
85  \cp ../../MITgcm_contrib/quarter_degree_global/code/* .  \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
86  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
87  make depend  make depend
88  make -j  make -j 4
89  cd ../exe  cd ../exe
90  \rm *  \rm *
91  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
# Line 95  qsub job_altix Line 95  qsub job_altix
95    
96    
97  ##########################################################################  ##########################################################################
98  # 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc  # 2880x2176 480-cpu (96x30)x(136x16) 1/8-deg integration on altix.
99  # requires input files in sudirectory iter69 to be at same level as MITgcm  # Requires input files in sudirectory iter69 to be at same level as MITgcm
100  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
101  # columbia18:/nobackup18/menemenl/eight.  # columbia18:/nobackup18/menemenl/eight.
102  # The integration length is 3 days.  # The integration length is 3 days.
# Line 110  cd bin Line 110  cd bin
110  \cp SIZE.h_8_480 SIZE.h  \cp SIZE.h_8_480 SIZE.h
111  ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix  ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
112  make depend  make depend
113  make -j  make -j 4
114  cd ../exe  cd ../exe
115  \rm *  \rm *
116  \cp ../bin/mitgcmuv .  \cp ../bin/mitgcmuv .
# Line 122  qsub job_altix Line 122  qsub job_altix
122    
123    
124  ##########################################################################  ##########################################################################
125  # 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc  # 2880x2176 960-cpu (96x30)x(68x32) 1/8-deg integration on altix with efc
126  # requires input files in sudirectory iter69 to be at same level as MITgcm  # requires input files in sudirectory iter69 to be at same level as MITgcm
127  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
128  # columbia18:/nobackup18/menemenl/eight.  # columbia18:/nobackup18/menemenl/eight.
# Line 141  cd bin Line 141  cd bin
141  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
142  make depend  make depend
143  make -j 4  make -j 4
144    \cp mitgcmuv ../exe/mitgcmuv960
145    
146    # NCEP integration start
147  cd ../exe  cd ../exe
 \cp ../bin/mitgcmuv .  
148  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
149  \ln -sf ../../iter69/* .  \ln -sf ../../iter69/* .
150  \cp data.exf_clim_8 data.exf_clim  \cp data.exf_clim_8 data.exf_clim
151  \cp data_SIO_8 data  \cp data_NCEP_8 data
152  modpickup_8  ./modpickup_8
153    scp data* mitgcm* columbia18:/nobackup/menemenl/eighth/MITgcm/exe
154    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
155                     -d /nobackup/menemenl/eighth/MITgcm/exe \
156                     c17 480 runon 11-490 mitgcmuv960 : \
157                     c18 480 runon 11-490 mitgcmuv960   \
158                     < /dev/null >&! output.run &
159    
160    days integrated with 150-s time steps: 1-30, 81-112,  
161    use data.diagnostics_150, data_NCEP_8_150
162    
163    # SIO integration start
164    cd ../exe
165    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
166    \ln -sf ../../iter69/* .
167    \cp data.exf_clim_8 data.exf_clim
168    \cp data.exf_SIO data.exf
169    \cp data_SIO_8 data
170    ./modpickup_8
171    scp data* mitgcmuv* columbia20:/nobackup/menemenl/eighth/MITgcm/exe
172  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
173                   -d /nobackup/menemenl/eighth/MITgcm/exe \                   -d /nobackup/menemenl/eighth/MITgcm/exe \
174                   c19 480 runon 11-490 mitgcmuv960 : \                   c19 480 runon 11-490 mitgcmuv960 : \
175                   c18 480 runon 11-490 mitgcmuv960   \                   c20 480 runon 11-490 mitgcmuv960   \
176                              >&! output.run &                   < /dev/null >&! output.run &
177    
178    /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
179                     c19 480 runon 11-490 mitgcmuv480 \
180                     < /dev/null >&! output.run &
181    
182    days integrated with 150-s time steps: 1-30, 81-91, 112-132,
183    use data.diagnostics_150, data_SIO_8_150
184    
185    
186    # 1920-CPU integration
187  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
188                   -d /nobackup/menemenl/eighth/MITgcm/exe \                   -d /nobackup/menemenl/eighth/MITgcm/exe \
189                   c17 480 runon 11-490 mitgcmuv1920 : \                   c17 480 runon 11-490 mitgcmuv1920 : \
190                   c18 480 runon 11-490 mitgcmuv1920 : \                   c18 480 runon 11-490 mitgcmuv1920 : \
191                   c19 480 runon 11-490 mitgcmuv1920 : \                   c19 480 runon 11-490 mitgcmuv1920 : \
192                   c20 480 runon 11-490 mitgcmuv1920   \                   c20 480 runon 11-490 mitgcmuv1920   \
193                              >&! output.run &                   < /dev/null >&! output.run &
   
   
   
194    
195    
196    
# Line 366  e17=readbin('test_oldstyle/W.0000000017. Line 389  e17=readbin('test_oldstyle/W.0000000017.
389  e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);  e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);
390  minmax(e1-e2)  minmax(e1-e2)
391  minmax(e2-(e16+e17+e18)/3)  minmax(e2-(e16+e17+e18)/3)
392    
393    
394    
395    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
396    
397    4-cluster STDOUT:
398    
399    (PID.TID 0000.0001)   Seconds in section "ALL                    [THE_MODEL_MAIN]":
400    (PID.TID 0000.0001)           User time:   23015.0722656250
401    (PID.TID 0000.0001)         System time:   1243.64355468750
402    (PID.TID 0000.0001)     Wall clock time:   24311.5318078995
403    (PID.TID 0000.0001)          No. starts:           1
404    (PID.TID 0000.0001)           No. stops:           1
405    (PID.TID 0000.0001)   Seconds in section "INITIALISE_FIXED       [THE_MODEL_MAIN]":
406    (PID.TID 0000.0001)           User time:   2.60839843750000
407    (PID.TID 0000.0001)         System time:   25.8310546875000
408    (PID.TID 0000.0001)     Wall clock time:   33.9003880023956
409    (PID.TID 0000.0001)          No. starts:           1
410    (PID.TID 0000.0001)           No. stops:           1
411    (PID.TID 0000.0001)   Seconds in section "THE_MAIN_LOOP          [THE_MODEL_MAIN]":
412    (PID.TID 0000.0001)           User time:   22703.6943359375
413    (PID.TID 0000.0001)         System time:   1182.34375000000
414    (PID.TID 0000.0001)     Wall clock time:   23933.1810109615
415    (PID.TID 0000.0001)          No. starts:           1
416    (PID.TID 0000.0001)           No. stops:           1
417    (PID.TID 0000.0001)   Seconds in section "INITIALISE_VARIA    [THE_MAIN_LOOP]":
418    (PID.TID 0000.0001)           User time:   280.416992187500
419    (PID.TID 0000.0001)         System time:   31.5332031250000
420    (PID.TID 0000.0001)     Wall clock time:   312.243556022644
421    (PID.TID 0000.0001)          No. starts:           1
422    (PID.TID 0000.0001)           No. stops:           1
423    (PID.TID 0000.0001)   Seconds in section "MONITOR             [THE_MAIN_LOOP]":
424    (PID.TID 0000.0001)           User time:  0.217773437500000
425    (PID.TID 0000.0001)         System time:  2.148437500000000E-002
426    (PID.TID 0000.0001)     Wall clock time:  0.239687919616699
427    (PID.TID 0000.0001)          No. starts:           1
428    (PID.TID 0000.0001)           No. stops:           1
429    (PID.TID 0000.0001)   Seconds in section "DO_THE_MODEL_IO     [THE_MAIN_LOOP]":
430    (PID.TID 0000.0001)           User time:  0.000000000000000E+000
431    (PID.TID 0000.0001)         System time:  2.929687500000000E-003
432    (PID.TID 0000.0001)     Wall clock time:  1.174807548522949E-002
433    (PID.TID 0000.0001)          No. starts:           1
434    (PID.TID 0000.0001)           No. stops:           1
435    (PID.TID 0000.0001)   Seconds in section "MAIN LOOP           [THE_MAIN_LOOP]":
436    (PID.TID 0000.0001)           User time:   22423.0595703125
437    (PID.TID 0000.0001)         System time:   1150.77441406250
438    (PID.TID 0000.0001)     Wall clock time:   23620.6801800728
439    (PID.TID 0000.0001)          No. starts:           1
440    (PID.TID 0000.0001)           No. stops:           1
441    (PID.TID 0000.0001)   Seconds in section "FORWARD_STEP        [THE_MAIN_LOOP]":
442    (PID.TID 0000.0001)           User time:   22422.7861328125
443    (PID.TID 0000.0001)         System time:   1131.83984375000
444    (PID.TID 0000.0001)     Wall clock time:   23601.7874710560
445    (PID.TID 0000.0001)          No. starts:       19584
446    (PID.TID 0000.0001)           No. stops:       19584
447    (PID.TID 0000.0001)   Seconds in section "EXF_GETFORCING     [FORWARD_STEP]":
448    (PID.TID 0000.0001)           User time:   2326.35644531250
449    (PID.TID 0000.0001)         System time:   19.2968750000000
450    (PID.TID 0000.0001)     Wall clock time:   2407.96958661079
451    (PID.TID 0000.0001)          No. starts:       19584
452    (PID.TID 0000.0001)           No. stops:       19584
453    (PID.TID 0000.0001)   Seconds in section "DO_ATMOSPHERIC_PHYS [FORWARD_STEP]":
454    (PID.TID 0000.0001)           User time:  0.241210937500000
455    (PID.TID 0000.0001)         System time:   65.8115234375000
456    (PID.TID 0000.0001)     Wall clock time:   63.7085669040680
457    (PID.TID 0000.0001)          No. starts:       19584
458    (PID.TID 0000.0001)           No. stops:       19584
459    (PID.TID 0000.0001)   Seconds in section "DO_OCEANIC_PHYS     [FORWARD_STEP]":
460    (PID.TID 0000.0001)           User time:   3878.48046875000
461    (PID.TID 0000.0001)         System time:   133.912109375000
462    (PID.TID 0000.0001)     Wall clock time:   3950.58713698387
463    (PID.TID 0000.0001)          No. starts:       19584
464    (PID.TID 0000.0001)           No. stops:       19584
465    (PID.TID 0000.0001)   Seconds in section "STATEKPP      [KPP_CALC]":
466    (PID.TID 0000.0001)           User time:   1737.89941406250
467    (PID.TID 0000.0001)         System time:   65.4189453125000
468    (PID.TID 0000.0001)     Wall clock time:   1742.63016891479
469    (PID.TID 0000.0001)          No. starts:       19584
470    (PID.TID 0000.0001)           No. stops:       19584
471    (PID.TID 0000.0001)   Seconds in section "KPPMIX [KPP_CALC]":
472    (PID.TID 0000.0001)           User time:   1112.83300781250
473    (PID.TID 0000.0001)         System time:  0.589843750000000
474    (PID.TID 0000.0001)     Wall clock time:   1113.83706998825
475    (PID.TID 0000.0001)          No. starts:       19584
476    (PID.TID 0000.0001)           No. stops:       19584
477    (PID.TID 0000.0001)   Seconds in section "DYNAMICS            [FORWARD_STEP]":
478    (PID.TID 0000.0001)           User time:   3743.64941406250
479    (PID.TID 0000.0001)         System time:  0.105468750000000
480    (PID.TID 0000.0001)     Wall clock time:   3746.24456620216
481    (PID.TID 0000.0001)          No. starts:       19584
482    (PID.TID 0000.0001)           No. stops:       19584
483    (PID.TID 0000.0001)   Seconds in section "UPDATE_R_STAR      [FORWARD_STEP]":
484    (PID.TID 0000.0001)           User time:   164.068359375000
485    (PID.TID 0000.0001)         System time:  0.115234375000000
486    (PID.TID 0000.0001)     Wall clock time:   164.361629724503
487    (PID.TID 0000.0001)          No. starts:       19584
488    (PID.TID 0000.0001)           No. stops:       19584
489    (PID.TID 0000.0001)   Seconds in section "UPDATE_CG2D        [FORWARD_STEP]":
490    (PID.TID 0000.0001)           User time:   1887.82617187500
491    (PID.TID 0000.0001)         System time:  2.929687500000000E-002
492    (PID.TID 0000.0001)     Wall clock time:   1889.06779980659
493    (PID.TID 0000.0001)          No. starts:       19584
494    (PID.TID 0000.0001)           No. stops:       19584
495    (PID.TID 0000.0001)   Seconds in section "SOLVE_FOR_PRESSURE  [FORWARD_STEP]":
496    (PID.TID 0000.0001)           User time:   2169.57617187500
497    (PID.TID 0000.0001)         System time:  0.207031250000000
498    (PID.TID 0000.0001)     Wall clock time:   2247.96811437607
499    (PID.TID 0000.0001)          No. starts:       19584
500    (PID.TID 0000.0001)           No. stops:       19584
501    (PID.TID 0000.0001)   Seconds in section "UV_CORRECTION_STEP  [FORWARD_STEP]":
502    (PID.TID 0000.0001)           User time:   941.570312500000
503    (PID.TID 0000.0001)         System time:   87.3515625000000
504    (PID.TID 0000.0001)     Wall clock time:   952.724304437637
505    (PID.TID 0000.0001)          No. starts:       19584
506    (PID.TID 0000.0001)           No. stops:       19584
507    (PID.TID 0000.0001)   Seconds in section "UPDATE_ETAH        [FORWARD_STEP]":
508    (PID.TID 0000.0001)           User time:  0.804687500000000
509    (PID.TID 0000.0001)         System time:   12.5117187500000
510    (PID.TID 0000.0001)     Wall clock time:   12.5125827789307
511    (PID.TID 0000.0001)          No. starts:       19584
512    (PID.TID 0000.0001)           No. stops:       19584
513    (PID.TID 0000.0001)   Seconds in section "CALC_R_STAR       [FORWARD_STEP]":
514    (PID.TID 0000.0001)           User time:   337.389648437500
515    (PID.TID 0000.0001)         System time:   10.0253906250000
516    (PID.TID 0000.0001)     Wall clock time:   393.278358459473
517    (PID.TID 0000.0001)          No. starts:       19584
518    (PID.TID 0000.0001)           No. stops:       19584
519    (PID.TID 0000.0001)   Seconds in section "BLOCKING_EXCHANGES  [FORWARD_STEP]":
520    (PID.TID 0000.0001)           User time:   1077.76074218750
521    (PID.TID 0000.0001)         System time:   48.0166015625000
522    (PID.TID 0000.0001)     Wall clock time:   1098.13236880302
523    (PID.TID 0000.0001)          No. starts:       39168
524    (PID.TID 0000.0001)           No. stops:       39168
525    (PID.TID 0000.0001)   Seconds in section "THERMODYNAMICS      [FORWARD_STEP]":
526    (PID.TID 0000.0001)           User time:   3478.11425781250
527    (PID.TID 0000.0001)         System time:   8.09960937500000
528    (PID.TID 0000.0001)     Wall clock time:   3480.73422122002
529    (PID.TID 0000.0001)          No. starts:       19584
530    (PID.TID 0000.0001)           No. stops:       19584
531    (PID.TID 0000.0001)   Seconds in section "TS_CORRECTION_STEP  [FORWARD_STEP]":
532    (PID.TID 0000.0001)           User time:   39.9218750000000
533    (PID.TID 0000.0001)         System time:  0.778320312500000
534    (PID.TID 0000.0001)     Wall clock time:   41.1147830486298
535    (PID.TID 0000.0001)          No. starts:       19584
536    (PID.TID 0000.0001)           No. stops:       19584
537    (PID.TID 0000.0001)   Seconds in section "DO_STATEVARS_DIAGS  [FORWARD_STEP]":
538    (PID.TID 0000.0001)           User time:   135.019531250000
539    (PID.TID 0000.0001)         System time:   13.3310546875000
540    (PID.TID 0000.0001)     Wall clock time:   155.438081502914
541    (PID.TID 0000.0001)          No. starts:       19584
542    (PID.TID 0000.0001)           No. stops:       19584
543    (PID.TID 0000.0001)   Seconds in section "MONITOR             [FORWARD_STEP]":
544    (PID.TID 0000.0001)           User time:   122.875976562500
545    (PID.TID 0000.0001)         System time:   19.3457031250000
546    (PID.TID 0000.0001)     Wall clock time:   145.524942874908
547    (PID.TID 0000.0001)          No. starts:       19584
548    (PID.TID 0000.0001)           No. stops:       19584
549    (PID.TID 0000.0001)   Seconds in section "DO_THE_MODEL_IO     [FORWARD_STEP]":
550    (PID.TID 0000.0001)           User time:   566.588867187500
551    (PID.TID 0000.0001)         System time:   89.4033203125000
552    (PID.TID 0000.0001)     Wall clock time:   657.526910781860
553    (PID.TID 0000.0001)          No. starts:       19584
554    (PID.TID 0000.0001)           No. stops:       19584
555    (PID.TID 0000.0001)   Seconds in section "WRITE_CHECKPOINT    [FORWARD_STEP]":
556    (PID.TID 0000.0001)           User time:   1545.53710937500
557    (PID.TID 0000.0001)         System time:   212.592773437500
558    (PID.TID 0000.0001)     Wall clock time:   1780.71277046204
559    (PID.TID 0000.0001)          No. starts:       19584
560    (PID.TID 0000.0001)           No. stops:       19584
561    (PID.TID 0000.0001)   Seconds in section "WRITE_CHECKPOINT       [THE_MODEL_MAIN]":
562    (PID.TID 0000.0001)           User time:   308.769531250000
563    (PID.TID 0000.0001)         System time:   35.4687500000000
564    (PID.TID 0000.0001)     Wall clock time:   344.450322151184
565    (PID.TID 0000.0001)          No. starts:           1
566    (PID.TID 0000.0001)           No. stops:           1
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