/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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revision 1.2 by dimitri, Tue Nov 30 01:29:12 2004 UTC revision 1.18 by dimitri, Tue Dec 14 01:20:45 2004 UTC
# Line 6  forced 1. by NCEP fields and 2. by SIO f Line 6  forced 1. by NCEP fields and 2. by SIO f
6    
7  cvs co MITgcm_contrib/quarter_degree_global  cvs co MITgcm_contrib/quarter_degree_global
8  cvs co MITgcm_code  cvs co MITgcm_code
9    cvs co MITgcm/verification/global_with_exf
10    cvs co MITgcm/verification/testreport
11    
 ##########################################################################  
 # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc  
 # requires input files in sudirectories iter69  
12    
13  cd MITgcm/  ##########################################################################
14  \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/* .  # mpi test of verification/global_with_exf on columbia
 \cp ../../../../MITgcm_contrib/high_res_cube/code-mods/s216t_85x85/* .  
 \cp SIZE.h_216 SIZE.h  
 \cp packages.conf_hr packages.conf  
15    
16  cd ../build  cd MITgcm/verification/global_with_exf/build
17  \rm *  \rm *
18  ../../../tools/genmake2 -mods=../code -of ../../../tools/build_options/linux_ia64_efc+mpi_altix  \cp ../code/* .
19    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h .
20    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h .
21    \cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test .
22    \mv SIZE.h_test SIZE.h
23    ../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_efc+mpi_altix
24  make depend  make depend
25  make -j 16  make -j 4
   
26  cd ..  cd ..
27  mkdir run  mkdir run
28  cd run  cd run
29  \rm *  \rm *
30  \cp ../input/* .  \cp ../build/mitgcmuv .
31  \cp ../../../../MITgcm_contrib/high_res_cube/input/* .  \ln -sf ../input/* .
32  qsub job_altix92  \rm data
33    \cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data
34    mpirun -np 2 mitgcmuv
35    
36    there is comparison output in
37    ../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000
38    
39    
40    ##########################################################################
41    # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc
42    # requires input files in sudirectory iter69 to be at same level as MITgcm
43    # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
44    # The integration length is 4018 days, 1992-2002.
45    # First three days need to be integrated using deltat=200.
46    
47    cd MITgcm
48    mkdir bin exe
49    cd bin
50    \rm *
51    \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
52    ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
53    make depend
54    make -j 4
55    cd ../exe
56    \rm *
57    \cp ../bin/mitgcmuv .
58    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
59    \ln -sf ../../iter69/* .
60    qsub job_altix
61    
62    
63    ##########################################################################
64    # 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc
65    # requires input files in sudirectory iter69 to be at same level as MITgcm
66    # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
67    # columbia18:/nobackup18/menemenl/eight.
68    # The integration length is 3 days.
69    # First three days need to be integrated using deltat=100.
70    
71    cd MITgcm
72    mkdir bin exe
73    cd bin
74    \rm *
75    \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
76    \cp SIZE.h_8_480 SIZE.h
77    ../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix
78    make depend
79    make -j 4
80    cd ../exe
81    \rm *
82    \cp ../bin/mitgcmuv .
83    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
84    \ln -sf ../../iter69/* .
85    \cp data.exf_clim_8 data.exf_clim
86    \cp data_SIO_8 data
87    qsub job_altix
88    
89    
90    ##########################################################################
91    # 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc
92    # requires input files in sudirectory iter69 to be at same level as MITgcm
93    # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
94    # columbia18:/nobackup18/menemenl/eight.
95    # The integration length is 3 days.
96    # First three days need to be integrated using deltat=100.
97    
98    module purge
99    module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85
100    setenv MPI_DSM_DISTRIBUTE
101    cd MITgcm
102    mkdir bin exe
103    cd bin
104    \rm *
105    \cp ../../MITgcm_contrib/quarter_degree_global/code/* .
106    \cp SIZE.h_8_960 SIZE.h
107    ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
108    make depend
109    make -j 4
110    
111    cd ../exe
112    \cp ../bin/mitgcmuv .
113    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
114    \ln -sf ../../iter69/* .
115    \cp data.exf_clim_8 data.exf_clim
116    \cp data_SIO_8 data
117    modpickup_8
118    mpirun -v -a a2k c18 480 runon 4-483 mitgcmuv : c20 480 runon 4-483 mitgcmuv
119    mpirun -v -a a2k c18 508 runon 4-511 mitgcmuv : c20 508 runon 4-511 mitgcmuv
120    
121    on columbia18:
122    ln -sf /nobackup18/menemenl/eighth /tmp/eighth
123    
124    on columbia20:
125    ln -sf /nobackup20/menemenl/eighth /tmp/eighth
126    
127    cd ~/exe
128    \cp /tmp/eighth/MITgcm/exe/mitgcmuv960 .
129    \cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* .
130    \ln -sf /tmp/eighth/iter69/* .
131    \cp data.exf_clim_8 data.exf_clim
132    \cp data_SIO_8 data
133    \ln -sf /tmp/eighth/MITgcm/exe/pick* .
134    
135    mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : c20 480 runon 4-511 mitgcmuv960 >&! output.txt &
136    
137    
138    
139    fails for 1/8
140    >   viscA4GridMin=3.e-4,
141    >   viscA4GridMax=4.e-3,
142    >   viscC4Leith=0.05,
143    >   deltat=300
144    fails:
145    <   viscA4GridMin=6.e-4,
146    <   viscA4GridMax=8.e-3,
147    <   viscC4Leith=0.1,
148    starting at ????? try
149    <   viscA4GridMin=6.e-4,
150    <   viscA4GridMax=8.e-3,
151    <   viscC4Leith=0.2,
152    
153    
154    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
155    
156    1/8 timing tests:
157    
158                                 columbia20
159                                 scsl.1.5.0.0
160                        c18      intel-comp.8.0.070
161    240-CPU             default  mpt.1.11-85
162    ------------------------------------------------
163    MAIN LOOP           7115     5066
164    EXF_GETFORCING      372      38
165    DO_OCEANIC_PHYS     1221     1272
166    STATEKPP            509      532
167    KPPMIX              370      374
168    DYNAMICS            1527     1429
169    SOLVE_FOR_PRESSURE  1804     206
170    BLOCKING_EXCHANGES  117      115
171    THERMODYNAMICS      1166     1100
172    DO_THE_MODEL_IO     173      177
173    WRITE_CHECKPOINT    341      333  
174    
175    
176                                 columbia20
177                                 scsl.1.5.0.0
178                        c18      intel-comp.8.0.070
179    480-CPU             default  mpt.1.11-85
180    ------------------------------------------------
181    MAIN LOOP           4024     2917
182    EXF_GETFORCING      218      33
183    DO_OCEANIC_PHYS     622      619
184    STATEKPP            269      265
185    KPPMIX              190      188
186    DYNAMICS            747      718
187    SOLVE_FOR_PRESSURE  966      119
188    BLOCKING_EXCHANGES  64       70
189    THERMODYNAMICS      553      582
190    DO_THE_MODEL_IO     178      156
191    WRITE_CHECKPOINT    364      332
192    
193    
194    
195                        240-CPU  480-CPU  960-CPU
196    ------------------------------------------------
197    MAIN LOOP           5066     2917     2227
198    EXF_GETFORCING      38       33       126
199    DO_OCEANIC_PHYS     1272     619      320
200    STATEKPP            532      265      138
201    KPPMIX              374      188      98
202    DYNAMICS            1429     718      313
203    SOLVE_FOR_PRESSURE  206      119      483
204    BLOCKING_EXCHANGES  115      70       53
205    THERMODYNAMICS      1100     582      294
206    DO_THE_MODEL_IO     177      156      131
207    WRITE_CHECKPOINT    333      332      302

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