/[MITgcm]/MITgcm_contrib/quarter_degree_global/README.txt
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revision 1.29 by dimitri, Sun Dec 19 17:42:02 2004 UTC revision 1.32 by dimitri, Tue Dec 21 09:16:55 2004 UTC
# Line 72  there is comparison output in Line 72  there is comparison output in
72    
73    
74  ##########################################################################  ##########################################################################
75  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc  # 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix.
76  # requires input files in subdirectory iter69 to be at same level as MITgcm  # Requires input files in subdirectory iter69 to be at same level as MITgcm
77  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10  # and MITgcm_contrib.  A copy of iter69 resides on columbia10:/nobackup10
78  # The integration length is 4018 days, 1992-2002.  # The integration length is 4018 days, 1992-2002.
79  # First three days need to be integrated using deltat=200.  # First three days need to be integrated using deltat=200.
# Line 95  qsub job_altix Line 95  qsub job_altix
95    
96    
97  ##########################################################################  ##########################################################################
98  # 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc  # 2880x2176 480-cpu (96x30)x(136x16) 1/8-deg integration on altix.
99  # requires input files in sudirectory iter69 to be at same level as MITgcm  # Requires input files in sudirectory iter69 to be at same level as MITgcm
100  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
101  # columbia18:/nobackup18/menemenl/eight.  # columbia18:/nobackup18/menemenl/eight.
102  # The integration length is 3 days.  # The integration length is 3 days.
# Line 122  qsub job_altix Line 122  qsub job_altix
122    
123    
124  ##########################################################################  ##########################################################################
125  # 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc  # 2880x2176 960-cpu (96x30)x(68x32) 1/8-deg integration on altix with efc
126  # requires input files in sudirectory iter69 to be at same level as MITgcm  # requires input files in sudirectory iter69 to be at same level as MITgcm
127  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on  # and MITgcm_contrib.  A copy of iter69 with 1/8-deg files resides on
128  # columbia18:/nobackup18/menemenl/eight.  # columbia18:/nobackup18/menemenl/eight.
# Line 140  cd bin Line 140  cd bin
140  \cp SIZE.h_8_960 SIZE.h  \cp SIZE.h_8_960 SIZE.h
141  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas  ../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas
142  make depend  make depend
143  make -j  make -j 4
144    \cp mitgcmuv ../exe/mitgcmuv960
145    
146    # NCEP integration start
147  cd ../exe  cd ../exe
 \cp ../bin/mitgcmuv .  
148  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .  \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
149  \ln -sf ../../iter69/* .  \ln -sf ../../iter69/* .
150  \cp data.exf_clim_8 data.exf_clim  \cp data.exf_clim_8 data.exf_clim
151  \cp data_SIO_8 data  \cp data_NCEP_8 data
 modpickup_8  
   
152  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
153                   -d /nobackup/menemenl/eighth/MITgcm/exe \                   -d /nobackup/menemenl/eighth/MITgcm/exe \
154                   c19 480 runon 11-490 mitgcmuv960 : \                   c17 480 runon 11-490 mitgcmuv960 : \
155                   c18 480 runon 11-490 mitgcmuv960   \                   c18 480 runon 11-490 mitgcmuv960   \
156                              >&! output.run &                              >&! output.run &
157    
158  mpirun -v -a a2k c18 480 runon 11-490 mitgcmuv : c20 480 runon 11-490 mitgcmuv  # NCEP integration start
159  mpirun -v -a a2k c18 508 runon 11-490 mitgcmuv : c20 508 runon 11-490 mitgcmuv  cd ../exe
160    \cp ../../MITgcm_contrib/quarter_degree_global/input/* .
161  on columbia18:  \ln -sf ../../iter69/* .
 ln -sf /nobackup18/menemenl/eighth /tmp/eighth  
   
 on columbia20:  
 ln -sf /nobackup20/menemenl/eighth /tmp/eighth  
   
 cd ~/exe  
 \cp /tmp/eighth/MITgcm/exe/mitgcmuv960 .  
 \cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* .  
 \ln -sf /tmp/eighth/iter69/* .  
162  \cp data.exf_clim_8 data.exf_clim  \cp data.exf_clim_8 data.exf_clim
163    \cp data.exf_SIO data.exf
164  \cp data_SIO_8 data  \cp data_SIO_8 data
165  \ln -sf /tmp/eighth/MITgcm/exe/pick* .  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
166                     -d /nobackup/menemenl/eighth/MITgcm/exe \
167                     c19 480 runon 11-490 mitgcmuv960 : \
168                     c20 480 runon 11-490 mitgcmuv960   \
169                                >&! output.run &
170    
 mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 11-490 mitgcmuv960 : \  
                              c20 480 runon 11-490 mitgcmuv960 >&! output.txt &  
171    
172  \cp data.test data  
173  scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe  modpickup_8
174  scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe  
 scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe  
 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \  
                  c18 480 runon 11-490 mitgcmuv1440 : \  
                  c19 480 runon 11-490 mitgcmuv1440 : \  
                  c20 480 runon 11-490 mitgcmuv1440   \  
                             >&! output.test1440  
 mkdir tests  
 mv STDOUT.0000 output.test1440 tests/stdout1440  
 \rm STD*  
 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \  
                  c17 480 runon 11-490 mitgcmuv1920 : \  
                  c18 480 runon 11-490 mitgcmuv1920 : \  
                  c19 480 runon 11-490 mitgcmuv1920 : \  
                  c20 480 runon 11-490 mitgcmuv1920   \  
                             >&! output.test1920  
 mv STDOUT.0000 output.test1920 tests/stdout1920  
 \rm STD*  
 \cp data.run data  
 scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe  
 scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe  
 scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe  
175  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \  /opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \
176                   -d /nobackup/menemenl/eighth/MITgcm/exe \                   -d /nobackup/menemenl/eighth/MITgcm/exe \
177                   c17 480 runon 11-490 mitgcmuv1920 : \                   c17 480 runon 11-490 mitgcmuv1920 : \
# Line 210  scp data:columbia20:/nobackup/menemenl/e Line 182  scp data:columbia20:/nobackup/menemenl/e
182    
183    
184    
   
 \cp data.test data  
 scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe  
 scp data columbia20:/nobackup/menemenl/eighth/MITgcm/exe  
 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \  
                  c18 480 runon 9-511 mitgcmuv1440 : \  
                  c19 480 runon 9-511 mitgcmuv1440 : \  
                  c20 480 runon 9-511 mitgcmuv1440   \  
                             >&! output.test1440  
 mkdir tests  
 mv STDOUT.0000 output.test1440 tests/stdout1440  
 \rm STD*  
 \cp data.run data  
 scp data columbia17:/nobackup/menemenl/eighth/MITgcm/exe  
 scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe  
 mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \  
                  c17 480 runon 9-511 mitgcmuv1440 : \  
                  c18 480 runon 9-511 mitgcmuv1440 : \  
                  c19 480 runon 9-511 mitgcmuv1440   \  
                             >&! output.run  
   
   
   
   
185  fails for 1/8  fails for 1/8
186  >   viscA4GridMin=3.e-4,  >   viscA4GridMin=3.e-4,
187  >   viscA4GridMax=4.e-3,  >   viscA4GridMax=4.e-3,
# Line 429  e17=readbin('test_oldstyle/W.0000000017. Line 377  e17=readbin('test_oldstyle/W.0000000017.
377  e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);  e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]);
378  minmax(e1-e2)  minmax(e1-e2)
379  minmax(e2-(e16+e17+e18)/3)  minmax(e2-(e16+e17+e18)/3)
380    
381    
382    
383    %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
384    
385    4-cluster STDOUT:
386    
387    (PID.TID 0000.0001)   Seconds in section "ALL                    [THE_MODEL_MAIN]":
388    (PID.TID 0000.0001)           User time:   23015.0722656250
389    (PID.TID 0000.0001)         System time:   1243.64355468750
390    (PID.TID 0000.0001)     Wall clock time:   24311.5318078995
391    (PID.TID 0000.0001)          No. starts:           1
392    (PID.TID 0000.0001)           No. stops:           1
393    (PID.TID 0000.0001)   Seconds in section "INITIALISE_FIXED       [THE_MODEL_MAIN]":
394    (PID.TID 0000.0001)           User time:   2.60839843750000
395    (PID.TID 0000.0001)         System time:   25.8310546875000
396    (PID.TID 0000.0001)     Wall clock time:   33.9003880023956
397    (PID.TID 0000.0001)          No. starts:           1
398    (PID.TID 0000.0001)           No. stops:           1
399    (PID.TID 0000.0001)   Seconds in section "THE_MAIN_LOOP          [THE_MODEL_MAIN]":
400    (PID.TID 0000.0001)           User time:   22703.6943359375
401    (PID.TID 0000.0001)         System time:   1182.34375000000
402    (PID.TID 0000.0001)     Wall clock time:   23933.1810109615
403    (PID.TID 0000.0001)          No. starts:           1
404    (PID.TID 0000.0001)           No. stops:           1
405    (PID.TID 0000.0001)   Seconds in section "INITIALISE_VARIA    [THE_MAIN_LOOP]":
406    (PID.TID 0000.0001)           User time:   280.416992187500
407    (PID.TID 0000.0001)         System time:   31.5332031250000
408    (PID.TID 0000.0001)     Wall clock time:   312.243556022644
409    (PID.TID 0000.0001)          No. starts:           1
410    (PID.TID 0000.0001)           No. stops:           1
411    (PID.TID 0000.0001)   Seconds in section "MONITOR             [THE_MAIN_LOOP]":
412    (PID.TID 0000.0001)           User time:  0.217773437500000
413    (PID.TID 0000.0001)         System time:  2.148437500000000E-002
414    (PID.TID 0000.0001)     Wall clock time:  0.239687919616699
415    (PID.TID 0000.0001)          No. starts:           1
416    (PID.TID 0000.0001)           No. stops:           1
417    (PID.TID 0000.0001)   Seconds in section "DO_THE_MODEL_IO     [THE_MAIN_LOOP]":
418    (PID.TID 0000.0001)           User time:  0.000000000000000E+000
419    (PID.TID 0000.0001)         System time:  2.929687500000000E-003
420    (PID.TID 0000.0001)     Wall clock time:  1.174807548522949E-002
421    (PID.TID 0000.0001)          No. starts:           1
422    (PID.TID 0000.0001)           No. stops:           1
423    (PID.TID 0000.0001)   Seconds in section "MAIN LOOP           [THE_MAIN_LOOP]":
424    (PID.TID 0000.0001)           User time:   22423.0595703125
425    (PID.TID 0000.0001)         System time:   1150.77441406250
426    (PID.TID 0000.0001)     Wall clock time:   23620.6801800728
427    (PID.TID 0000.0001)          No. starts:           1
428    (PID.TID 0000.0001)           No. stops:           1
429    (PID.TID 0000.0001)   Seconds in section "FORWARD_STEP        [THE_MAIN_LOOP]":
430    (PID.TID 0000.0001)           User time:   22422.7861328125
431    (PID.TID 0000.0001)         System time:   1131.83984375000
432    (PID.TID 0000.0001)     Wall clock time:   23601.7874710560
433    (PID.TID 0000.0001)          No. starts:       19584
434    (PID.TID 0000.0001)           No. stops:       19584
435    (PID.TID 0000.0001)   Seconds in section "EXF_GETFORCING     [FORWARD_STEP]":
436    (PID.TID 0000.0001)           User time:   2326.35644531250
437    (PID.TID 0000.0001)         System time:   19.2968750000000
438    (PID.TID 0000.0001)     Wall clock time:   2407.96958661079
439    (PID.TID 0000.0001)          No. starts:       19584
440    (PID.TID 0000.0001)           No. stops:       19584
441    (PID.TID 0000.0001)   Seconds in section "DO_ATMOSPHERIC_PHYS [FORWARD_STEP]":
442    (PID.TID 0000.0001)           User time:  0.241210937500000
443    (PID.TID 0000.0001)         System time:   65.8115234375000
444    (PID.TID 0000.0001)     Wall clock time:   63.7085669040680
445    (PID.TID 0000.0001)          No. starts:       19584
446    (PID.TID 0000.0001)           No. stops:       19584
447    (PID.TID 0000.0001)   Seconds in section "DO_OCEANIC_PHYS     [FORWARD_STEP]":
448    (PID.TID 0000.0001)           User time:   3878.48046875000
449    (PID.TID 0000.0001)         System time:   133.912109375000
450    (PID.TID 0000.0001)     Wall clock time:   3950.58713698387
451    (PID.TID 0000.0001)          No. starts:       19584
452    (PID.TID 0000.0001)           No. stops:       19584
453    (PID.TID 0000.0001)   Seconds in section "STATEKPP      [KPP_CALC]":
454    (PID.TID 0000.0001)           User time:   1737.89941406250
455    (PID.TID 0000.0001)         System time:   65.4189453125000
456    (PID.TID 0000.0001)     Wall clock time:   1742.63016891479
457    (PID.TID 0000.0001)          No. starts:       19584
458    (PID.TID 0000.0001)           No. stops:       19584
459    (PID.TID 0000.0001)   Seconds in section "KPPMIX [KPP_CALC]":
460    (PID.TID 0000.0001)           User time:   1112.83300781250
461    (PID.TID 0000.0001)         System time:  0.589843750000000
462    (PID.TID 0000.0001)     Wall clock time:   1113.83706998825
463    (PID.TID 0000.0001)          No. starts:       19584
464    (PID.TID 0000.0001)           No. stops:       19584
465    (PID.TID 0000.0001)   Seconds in section "DYNAMICS            [FORWARD_STEP]":
466    (PID.TID 0000.0001)           User time:   3743.64941406250
467    (PID.TID 0000.0001)         System time:  0.105468750000000
468    (PID.TID 0000.0001)     Wall clock time:   3746.24456620216
469    (PID.TID 0000.0001)          No. starts:       19584
470    (PID.TID 0000.0001)           No. stops:       19584
471    (PID.TID 0000.0001)   Seconds in section "UPDATE_R_STAR      [FORWARD_STEP]":
472    (PID.TID 0000.0001)           User time:   164.068359375000
473    (PID.TID 0000.0001)         System time:  0.115234375000000
474    (PID.TID 0000.0001)     Wall clock time:   164.361629724503
475    (PID.TID 0000.0001)          No. starts:       19584
476    (PID.TID 0000.0001)           No. stops:       19584
477    (PID.TID 0000.0001)   Seconds in section "UPDATE_CG2D        [FORWARD_STEP]":
478    (PID.TID 0000.0001)           User time:   1887.82617187500
479    (PID.TID 0000.0001)         System time:  2.929687500000000E-002
480    (PID.TID 0000.0001)     Wall clock time:   1889.06779980659
481    (PID.TID 0000.0001)          No. starts:       19584
482    (PID.TID 0000.0001)           No. stops:       19584
483    (PID.TID 0000.0001)   Seconds in section "SOLVE_FOR_PRESSURE  [FORWARD_STEP]":
484    (PID.TID 0000.0001)           User time:   2169.57617187500
485    (PID.TID 0000.0001)         System time:  0.207031250000000
486    (PID.TID 0000.0001)     Wall clock time:   2247.96811437607
487    (PID.TID 0000.0001)          No. starts:       19584
488    (PID.TID 0000.0001)           No. stops:       19584
489    (PID.TID 0000.0001)   Seconds in section "UV_CORRECTION_STEP  [FORWARD_STEP]":
490    (PID.TID 0000.0001)           User time:   941.570312500000
491    (PID.TID 0000.0001)         System time:   87.3515625000000
492    (PID.TID 0000.0001)     Wall clock time:   952.724304437637
493    (PID.TID 0000.0001)          No. starts:       19584
494    (PID.TID 0000.0001)           No. stops:       19584
495    (PID.TID 0000.0001)   Seconds in section "UPDATE_ETAH        [FORWARD_STEP]":
496    (PID.TID 0000.0001)           User time:  0.804687500000000
497    (PID.TID 0000.0001)         System time:   12.5117187500000
498    (PID.TID 0000.0001)     Wall clock time:   12.5125827789307
499    (PID.TID 0000.0001)          No. starts:       19584
500    (PID.TID 0000.0001)           No. stops:       19584
501    (PID.TID 0000.0001)   Seconds in section "CALC_R_STAR       [FORWARD_STEP]":
502    (PID.TID 0000.0001)           User time:   337.389648437500
503    (PID.TID 0000.0001)         System time:   10.0253906250000
504    (PID.TID 0000.0001)     Wall clock time:   393.278358459473
505    (PID.TID 0000.0001)          No. starts:       19584
506    (PID.TID 0000.0001)           No. stops:       19584
507    (PID.TID 0000.0001)   Seconds in section "BLOCKING_EXCHANGES  [FORWARD_STEP]":
508    (PID.TID 0000.0001)           User time:   1077.76074218750
509    (PID.TID 0000.0001)         System time:   48.0166015625000
510    (PID.TID 0000.0001)     Wall clock time:   1098.13236880302
511    (PID.TID 0000.0001)          No. starts:       39168
512    (PID.TID 0000.0001)           No. stops:       39168
513    (PID.TID 0000.0001)   Seconds in section "THERMODYNAMICS      [FORWARD_STEP]":
514    (PID.TID 0000.0001)           User time:   3478.11425781250
515    (PID.TID 0000.0001)         System time:   8.09960937500000
516    (PID.TID 0000.0001)     Wall clock time:   3480.73422122002
517    (PID.TID 0000.0001)          No. starts:       19584
518    (PID.TID 0000.0001)           No. stops:       19584
519    (PID.TID 0000.0001)   Seconds in section "TS_CORRECTION_STEP  [FORWARD_STEP]":
520    (PID.TID 0000.0001)           User time:   39.9218750000000
521    (PID.TID 0000.0001)         System time:  0.778320312500000
522    (PID.TID 0000.0001)     Wall clock time:   41.1147830486298
523    (PID.TID 0000.0001)          No. starts:       19584
524    (PID.TID 0000.0001)           No. stops:       19584
525    (PID.TID 0000.0001)   Seconds in section "DO_STATEVARS_DIAGS  [FORWARD_STEP]":
526    (PID.TID 0000.0001)           User time:   135.019531250000
527    (PID.TID 0000.0001)         System time:   13.3310546875000
528    (PID.TID 0000.0001)     Wall clock time:   155.438081502914
529    (PID.TID 0000.0001)          No. starts:       19584
530    (PID.TID 0000.0001)           No. stops:       19584
531    (PID.TID 0000.0001)   Seconds in section "MONITOR             [FORWARD_STEP]":
532    (PID.TID 0000.0001)           User time:   122.875976562500
533    (PID.TID 0000.0001)         System time:   19.3457031250000
534    (PID.TID 0000.0001)     Wall clock time:   145.524942874908
535    (PID.TID 0000.0001)          No. starts:       19584
536    (PID.TID 0000.0001)           No. stops:       19584
537    (PID.TID 0000.0001)   Seconds in section "DO_THE_MODEL_IO     [FORWARD_STEP]":
538    (PID.TID 0000.0001)           User time:   566.588867187500
539    (PID.TID 0000.0001)         System time:   89.4033203125000
540    (PID.TID 0000.0001)     Wall clock time:   657.526910781860
541    (PID.TID 0000.0001)          No. starts:       19584
542    (PID.TID 0000.0001)           No. stops:       19584
543    (PID.TID 0000.0001)   Seconds in section "WRITE_CHECKPOINT    [FORWARD_STEP]":
544    (PID.TID 0000.0001)           User time:   1545.53710937500
545    (PID.TID 0000.0001)         System time:   212.592773437500
546    (PID.TID 0000.0001)     Wall clock time:   1780.71277046204
547    (PID.TID 0000.0001)          No. starts:       19584
548    (PID.TID 0000.0001)           No. stops:       19584
549    (PID.TID 0000.0001)   Seconds in section "WRITE_CHECKPOINT       [THE_MODEL_MAIN]":
550    (PID.TID 0000.0001)           User time:   308.769531250000
551    (PID.TID 0000.0001)         System time:   35.4687500000000
552    (PID.TID 0000.0001)     Wall clock time:   344.450322151184
553    (PID.TID 0000.0001)          No. starts:           1
554    (PID.TID 0000.0001)           No. stops:           1
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