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dimitri |
1.1 |
Instructions for setting up a quarter degree integration |
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forced 1. by NCEP fields and 2. by SIO fields. |
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########################################################################## |
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# getting the code from anonymous CVS server |
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cvs co MITgcm_contrib/quarter_degree_global |
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cvs co MITgcm_code |
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dimitri |
1.4 |
cvs co MITgcm/verification/global_with_exf |
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cvs co MITgcm/verification/testreport |
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dimitri |
1.25 |
############################################################################# |
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dimitri |
1.26 |
# 1-CPU verification/global_with_exf including pkg/diagnostics |
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examples: |
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aim.5l_cs/input/data.diagnostics fizhi-gridalt-hs/input/data.diagnostics |
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dome/input/data.diagnostics hs94.cs-32x32x5/input/data.diagnostics |
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e1=readbin('test_oldstyle/ETAtave.0000000018.data',[90 40]); |
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e2=readbin('ETAN.0000000018.data',[90 40]); |
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e16=readbin('test_oldstyle/Eta.0000000016.data',[90 40]); |
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e17=readbin('test_oldstyle/Eta.0000000017.data',[90 40]); |
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e18=readbin('test_oldstyle/Eta.0000000018.data',[90 40]); |
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minmax(e1-e2) |
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minmax(e2-(e16+e17+e18)/3) |
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e1=readbin('test_oldstyle/sFluxtave.0000000018.data',[90 40]); |
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e2=readbin('SFLUX.0000000018.data',[90 40]); |
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minmax(e1-e2) |
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e1=readbin('test_oldstyle/tFluxtave.0000000018.data',[90 40]); |
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e2=readbin('TFLUX.0000000018.data',[90 40]); |
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minmax(e1-e2) |
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e1=readbin('TRELAX.0000000018.data',[90 40]); |
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subplot(211),mypcolor(e1');colorbar |
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e1=readbin('SRELAX.0000000018.data',[90 40]); |
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subplot(211),mypcolor(e1');colorbar |
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e1=readbin('TICE.0000000018.data',[90 40]); |
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subplot(211),mypcolor(e1');colorbar |
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e1=readbin('test_oldstyle/wVeltave.0000000018.data',[90 40 15]); |
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e2=readbin('WVEL.0000000018.data',[90 40 15]); |
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e16=readbin('test_oldstyle/W.0000000016.data',[90 40 15]); |
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e17=readbin('test_oldstyle/W.0000000017.data',[90 40 15]); |
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e18=readbin('test_oldstyle/W.0000000018.data',[90 40 15]); |
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minmax(e1-e2) |
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minmax(e2-(e16+e17+e18)/3) |
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cd MITgcm/verification/global_with_exf/build |
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\rm * |
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\cp ../code/* . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/DIAGNOSTICS_SIZE.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test1 . |
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\mv SIZE.h_test1 SIZE.h |
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../../../tools/genmake2 |
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make depend |
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make -j |
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cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../build/mitgcmuv . |
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\ln -sf ../input/* . |
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\rm data |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.pkg . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.kpp . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data.diagnostics . |
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mitgcmuv >& output.txt |
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there is comparison output in |
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../../../../MITgcm_contrib/quarter_degree_global/results/output.txt |
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############################################################################# |
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dimitri |
1.25 |
# mpi test verification/global_with_exf including pkg/diagnostics on columbia |
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dimitri |
1.4 |
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cd MITgcm/verification/global_with_exf/build |
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\rm * |
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\cp ../code/* . |
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dimitri |
1.26 |
\cp ../../../../MITgcm_contrib/quarter_degree_global/code/packages.conf . |
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dimitri |
1.4 |
\cp ../../../../MITgcm_contrib/quarter_degree_global/code/ECCO_CPPOPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/CPP_OPTIONS.h . |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/code/SIZE.h_test . |
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dimitri |
1.5 |
\mv SIZE.h_test SIZE.h |
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dimitri |
1.26 |
../../../tools/genmake2 -of ../../../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.4 |
make depend |
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dimitri |
1.26 |
make -j |
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dimitri |
1.4 |
cd .. |
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mkdir run |
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cd run |
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\rm * |
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\cp ../build/mitgcmuv . |
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\ln -sf ../input/* . |
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\rm data |
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\cp ../../../../MITgcm_contrib/quarter_degree_global/input/data_test data |
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mpirun -np 2 mitgcmuv |
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dimitri |
1.5 |
there is comparison output in |
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../../../../MITgcm_contrib/quarter_degree_global/results/STDOUT.0000 |
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dimitri |
1.1 |
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########################################################################## |
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dimitri |
1.2 |
# 1440x1088 204-cpu (120x12)x(64x17) 1/4-deg integration on altix with efc |
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dimitri |
1.22 |
# requires input files in subdirectory iter69 to be at same level as MITgcm |
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dimitri |
1.3 |
# and MITgcm_contrib. A copy of iter69 resides on columbia10:/nobackup10 |
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dimitri |
1.8 |
# The integration length is 4018 days, 1992-2002. |
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# First three days need to be integrated using deltat=200. |
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dimitri |
1.1 |
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dimitri |
1.3 |
cd MITgcm |
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mkdir bin exe |
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cd bin |
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dimitri |
1.1 |
\rm * |
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dimitri |
1.6 |
\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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dimitri |
1.22 |
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.1 |
make depend |
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dimitri |
1.26 |
make -j |
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dimitri |
1.3 |
cd ../exe |
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dimitri |
1.1 |
\rm * |
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dimitri |
1.3 |
\cp ../bin/mitgcmuv . |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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qsub job_altix |
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dimitri |
1.9 |
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########################################################################## |
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# 2880x2176 480-cpu (96x30)x(136x16) 1/4-deg integration on altix with efc |
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# requires input files in sudirectory iter69 to be at same level as MITgcm |
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# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on |
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# columbia18:/nobackup18/menemenl/eight. |
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# The integration length is 3 days. |
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# First three days need to be integrated using deltat=100. |
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cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_8_480 SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_efc+mpi_altix |
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make depend |
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dimitri |
1.26 |
make -j |
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dimitri |
1.9 |
cd ../exe |
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\rm * |
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\cp ../bin/mitgcmuv . |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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dimitri |
1.10 |
\cp data.exf_clim_8 data.exf_clim |
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\cp data_SIO_8 data |
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dimitri |
1.9 |
qsub job_altix |
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dimitri |
1.11 |
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dimitri |
1.12 |
########################################################################## |
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# 2880x2176 960-cpu (96x30)x(68x32) 1/4-deg integration on altix with efc |
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# requires input files in sudirectory iter69 to be at same level as MITgcm |
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# and MITgcm_contrib. A copy of iter69 with 1/8-deg files resides on |
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# columbia18:/nobackup18/menemenl/eight. |
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# The integration length is 3 days. |
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# First three days need to be integrated using deltat=100. |
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module purge |
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module load modules scsl.1.5.0.0 intel-comp.8.0.070 mpt.1.11-85 |
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dimitri |
1.14 |
setenv MPI_DSM_DISTRIBUTE |
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dimitri |
1.12 |
cd MITgcm |
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mkdir bin exe |
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cd bin |
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\rm * |
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\cp ../../MITgcm_contrib/quarter_degree_global/code/* . |
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\cp SIZE.h_8_960 SIZE.h |
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../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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make depend |
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dimitri |
1.26 |
make -j |
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dimitri |
1.13 |
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dimitri |
1.12 |
cd ../exe |
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\cp ../bin/mitgcmuv . |
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\cp ../../MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf ../../iter69/* . |
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\cp data.exf_clim_8 data.exf_clim |
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\cp data_SIO_8 data |
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modpickup_8 |
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mpirun -v -a a2k c18 480 runon 4-483 mitgcmuv : c20 480 runon 4-483 mitgcmuv |
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mpirun -v -a a2k c18 508 runon 4-511 mitgcmuv : c20 508 runon 4-511 mitgcmuv |
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dimitri |
1.13 |
on columbia18: |
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ln -sf /nobackup18/menemenl/eighth /tmp/eighth |
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on columbia20: |
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ln -sf /nobackup20/menemenl/eighth /tmp/eighth |
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cd ~/exe |
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\cp /tmp/eighth/MITgcm/exe/mitgcmuv960 . |
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\cp /tmp/eighth/MITgcm_contrib/quarter_degree_global/input/* . |
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\ln -sf /tmp/eighth/iter69/* . |
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\cp data.exf_clim_8 data.exf_clim |
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\cp data_SIO_8 data |
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\ln -sf /tmp/eighth/MITgcm/exe/pick* . |
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dimitri |
1.23 |
mpirun -v -a a2k -d /tmp/eighth/MITgcm/exe c18 480 runon 4-511 mitgcmuv960 : \ |
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c20 480 runon 4-511 mitgcmuv960 >&! output.txt & |
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\cp data.test data |
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scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe |
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mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \ |
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c18 480 runon 4-511 mitgcmuv1440 : \ |
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c19 480 runon 4-511 mitgcmuv1440 : \ |
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c20 480 runon 4-511 mitgcmuv1440 \ |
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>&! output.test1440 |
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mkdir tests |
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mv STDOUT.0000 output.test1440 tests/stdout1440 |
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\rm STD* |
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mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \ |
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dimitri |
1.26 |
c17 480 runon 14-511 mitgcmuv1920 : \ |
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c18 480 runon 14-511 mitgcmuv1920 : \ |
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c19 480 runon 14-511 mitgcmuv1920 : \ |
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c20 480 runon 14-511 mitgcmuv1920 \ |
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dimitri |
1.23 |
>&! output.test1920 |
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mv STDOUT.0000 output.test1920 tests/stdout1920 |
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\rm STD* |
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\cp data.run data |
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scp data:columbia17:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data:columbia19:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data:columbia20:/nobackup/menemenl/eighth/MITgcm/exe |
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dimitri |
1.26 |
/opt/sgi/mpt/1.11-85/bin/mpirun.real -v -a a2k \ |
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-d /nobackup/menemenl/eighth/MITgcm/exe \ |
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dimitri |
1.23 |
c17 480 runon 9-511 mitgcmuv1920 : \ |
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c18 480 runon 9-511 mitgcmuv1920 : \ |
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c19 480 runon 9-511 mitgcmuv1920 : \ |
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c20 480 runon 9-511 mitgcmuv1920 \ |
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>&! output.run |
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\cp data.test data |
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scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data columbia20:/nobackup/menemenl/eighth/MITgcm/exe |
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mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \ |
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c18 480 runon 9-511 mitgcmuv1440 : \ |
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c19 480 runon 9-511 mitgcmuv1440 : \ |
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c20 480 runon 9-511 mitgcmuv1440 \ |
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>&! output.test1440 |
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mkdir tests |
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mv STDOUT.0000 output.test1440 tests/stdout1440 |
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\rm STD* |
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\cp data.run data |
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scp data columbia17:/nobackup/menemenl/eighth/MITgcm/exe |
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scp data columbia19:/nobackup/menemenl/eighth/MITgcm/exe |
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mpirun -v -a a2k -d /nobackup/menemenl/eighth/MITgcm/exe \ |
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c17 480 runon 9-511 mitgcmuv1440 : \ |
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dimitri |
1.26 |
c18 480 runon 9-511 mitgcmuv1440 : \ |
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c19 480 runon 9-511 mitgcmuv1440 \ |
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dimitri |
1.23 |
>&! output.run |
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dimitri |
1.12 |
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dimitri |
1.11 |
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fails for 1/8 |
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> viscA4GridMin=3.e-4, |
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> viscA4GridMax=4.e-3, |
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> viscC4Leith=0.05, |
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> deltat=300 |
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dimitri |
1.17 |
fails: |
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dimitri |
1.11 |
< viscA4GridMin=6.e-4, |
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< viscA4GridMax=8.e-3, |
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< viscC4Leith=0.1, |
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dimitri |
1.19 |
fails: |
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dimitri |
1.17 |
< viscA4GridMin=6.e-4, |
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< viscA4GridMax=8.e-3, |
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< viscC4Leith=0.2, |
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dimitri |
1.19 |
fails: |
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< viscA4GridMin=1.e-3, |
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< viscA4GridMax=1.e-2, |
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< viscC4Leith=0.2, |
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dimitri |
1.20 |
fails: |
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dimitri |
1.19 |
< viscA4GridMin=1.e-3, |
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< viscA4GridMax=1.e-2, |
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< viscC4Leith=0.3, |
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dimitri |
1.20 |
fails: |
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< viscA4GridMin=1.2e-3, |
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< viscA4GridMax=1.6e-2, |
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< viscC4Leith=0.2, |
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fails: |
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< viscA4GridMin=1.2e-3, |
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< viscA4GridMax=1.6e-2, |
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< viscC4Leith=0.4, |
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fails |
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< viscA4GridMin=1.2e-3, |
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< viscA4GridMax=1.2e-2, |
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< viscC4Leith=1.2, |
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fails: |
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< viscA4GridMin=2e-3, |
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< viscA4GridMax=1e-2, |
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|
|
< viscC4Leith=0.1, |
| 310 |
|
|
fails: |
| 311 |
|
|
< viscA4GridMin=2e-3, |
| 312 |
|
|
< viscA4GridMax=1e-2, |
| 313 |
|
|
< viscC4Leith=0.2, |
| 314 |
dimitri |
1.26 |
fails: |
| 315 |
dimitri |
1.20 |
< viscA4GridMin=4e-3, |
| 316 |
|
|
< viscA4GridMax=8e-3, |
| 317 |
|
|
< viscC4Leith=0.2, |
| 318 |
dimitri |
1.26 |
fails: |
| 319 |
|
|
viscA4GridMin=5e-3, |
| 320 |
|
|
viscA4GridMax=1e-2, |
| 321 |
|
|
viscC4Leith=.2, |
| 322 |
|
|
starting with time step 50112, try: |
| 323 |
|
|
(this mean day 174 becomes day 116) |
| 324 |
|
|
viscA4GridMin=6.e-4, |
| 325 |
|
|
viscA4GridMax=8.e-3, |
| 326 |
|
|
viscC4Leith=0.1, |
| 327 |
|
|
deltat=200 |
| 328 |
dimitri |
1.14 |
|
| 329 |
|
|
|
| 330 |
|
|
%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| 331 |
|
|
|
| 332 |
|
|
1/8 timing tests: |
| 333 |
|
|
|
| 334 |
|
|
columbia20 |
| 335 |
|
|
scsl.1.5.0.0 |
| 336 |
|
|
c18 intel-comp.8.0.070 |
| 337 |
|
|
240-CPU default mpt.1.11-85 |
| 338 |
|
|
------------------------------------------------ |
| 339 |
|
|
MAIN LOOP 7115 5066 |
| 340 |
|
|
EXF_GETFORCING 372 38 |
| 341 |
|
|
DO_OCEANIC_PHYS 1221 1272 |
| 342 |
|
|
STATEKPP 509 532 |
| 343 |
|
|
KPPMIX 370 374 |
| 344 |
|
|
DYNAMICS 1527 1429 |
| 345 |
|
|
SOLVE_FOR_PRESSURE 1804 206 |
| 346 |
|
|
BLOCKING_EXCHANGES 117 115 |
| 347 |
|
|
THERMODYNAMICS 1166 1100 |
| 348 |
|
|
DO_THE_MODEL_IO 173 177 |
| 349 |
dimitri |
1.15 |
WRITE_CHECKPOINT 341 333 |
| 350 |
dimitri |
1.14 |
|
| 351 |
|
|
|
| 352 |
|
|
columbia20 |
| 353 |
|
|
scsl.1.5.0.0 |
| 354 |
|
|
c18 intel-comp.8.0.070 |
| 355 |
|
|
480-CPU default mpt.1.11-85 |
| 356 |
dimitri |
1.21 |
c19 default |
| 357 |
dimitri |
1.23 |
c17 default, other processes |
| 358 |
|
|
c19 new |
| 359 |
dimitri |
1.21 |
------------------------------------------------------------------------- |
| 360 |
dimitri |
1.23 |
MAIN LOOP 4024 2917 5379 8895 3571 |
| 361 |
|
|
EXF_GETFORCING 218 33 880 261 227 |
| 362 |
|
|
DO_OCEANIC_PHYS 622 619 621 913 620 |
| 363 |
|
|
STATEKPP 269 265 268 310 265 |
| 364 |
|
|
KPPMIX 190 188 189 291 189 |
| 365 |
|
|
DYNAMICS 747 718 745 1456 714 |
| 366 |
|
|
SOLVE_FOR_PRESSURE 966 119 1703 2748 900 |
| 367 |
|
|
BLOCKING_EXCHANGES 64 70 392 375 70 |
| 368 |
|
|
THERMODYNAMICS 553 582 566 1510 584 |
| 369 |
|
|
DO_THE_MODEL_IO 178 156 149 184 152 |
| 370 |
|
|
WRITE_CHECKPOINT 364 332 864 420 333 |
| 371 |
dimitri |
1.15 |
|
| 372 |
|
|
|
| 373 |
|
|
|
| 374 |
dimitri |
1.26 |
CPU 240 480 960 1440 1920 |
| 375 |
|
|
------------------------------------------------------------- |
| 376 |
|
|
MAIN LOOP 5066 2917 2227 1551 1276 |
| 377 |
|
|
EXF_GETFORCING 38 33 126 60 83 |
| 378 |
|
|
DO_OCEANIC_PHYS 1272 619 320 390 186 |
| 379 |
|
|
STATEKPP 532 265 138 181 77 |
| 380 |
|
|
KPPMIX 374 188 98 112 53 |
| 381 |
|
|
DYNAMICS 1429 718 313 319 173 |
| 382 |
|
|
SOLVE_FOR_PRESSURE 206 119 483 169 310 |
| 383 |
|
|
BLOCKING_EXCHANGES 115 70 53 29 28 |
| 384 |
|
|
THERMODYNAMICS 1100 582 294 279 172 |
| 385 |
|
|
DO_THE_MODEL_IO 177 156 131 202 155 |
| 386 |
|
|
WRITE_CHECKPOINT 333 332 302 524 352 |
| 387 |
|
|
|
| 388 |
|
|
|
| 389 |
|
|
4 clusters |
| 390 |
|
|
Dec 16 08:17 Ttave.0000051840.data |
| 391 |
|
|
Dec 16 08:47 Ttave.0000053136.data |
| 392 |
|
|
Dec 16 09:17 Ttave.0000054432.data |
| 393 |
|
|
Dec 16 09:53 Ttave.0000055728.data |
| 394 |
|
|
Dec 17 14:08 Ttave.0000075168.data |
| 395 |
|
|
Dec 17 14:33 Ttave.0000076464.data |
| 396 |
|
|
Dec 17 14:58 Ttave.0000077760.data |
| 397 |
|
|
Dec 17 15:29 Ttave.0000079056.data |
| 398 |
|
|
|
| 399 |
|
|
1 cluster |
| 400 |
|
|
Dec 16 22:14 Ttave.0000059616.data |
| 401 |
|
|
Dec 16 23:16 Ttave.0000060912.data |
| 402 |
|
|
Dec 17 00:19 Ttave.0000062208.data |
| 403 |
|
|
Dec 17 01:27 Ttave.0000063504.data |
| 404 |
|
|
Dec 17 02:29 Ttave.0000064800.data |
| 405 |
|
|
Dec 17 03:31 Ttave.0000066096.data |
| 406 |
|
|
Dec 17 04:39 Ttave.0000067392.data |
| 407 |
|
|
Dec 17 05:42 Ttave.0000068688.data |
| 408 |
|
|
Dec 17 06:44 Ttave.0000069984.data |
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Revision Log
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