/[MITgcm]/MITgcm_contrib/osse/README
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revision 1.3 by afe, Tue Jun 8 14:13:39 2004 UTC revision 1.5 by afe, Tue Jun 8 19:52:21 2004 UTC
# Line 32  where examples and test examples of MITg Line 32  where examples and test examples of MITg
32    
33  CONTENTS  CONTENTS
34    
   
   
35  code: modifications to MITgcm to run in cyclindrical coordinates.  At  code: modifications to MITgcm to run in cyclindrical coordinates.  At
36  the time of this writing, it requires checkpoint48 to compile and run.  the time of this writing, it requires checkpoint48 to compile and run.
37    
38    input: initialization and input files for MITgcm
39    
40  filter: source and data files to run the data assimilation and Kalman  filter: source and data files to run the data assimilation and Kalman
41  filter.  filter.
42    
43    utils: assorted Matlab m-files
44    
45    EnKF: empty
46    
47    run: empty
48    
49    
50    COMPILING AND RUNNING THE MODEL
51    
52    The following series of commands creates the MITgcm executable.  
53    
54    From the MITgcm root:
55    
56    cd verification/osse/build  
57    ../../../tools/genmake -mods=../code  # creates makefile
58    make depend       # contructs Fortran code from model codebase
59    make              # makes executable mitgcmuv
60    
61    Try a test run, while redirecting the standard output to a file.  The
62    input directory contains files that should be present in the working
63    directory when you run mitgcmuv.  It is recommended that you copy the
64    input contents to a different directory for running -- mitgcmuv does
65    not change them, but they can be lost in the multitudes of output
66    files.
67    
68    The data assimilation code is made by typing ``make'' in the filter
69    directory, which creates an executable named osse.  
70    
71    Before running osse, the initial ensemble needs to be set up by
72    running the mkens script in verification/osse/da.  mkens creates the
73    directories, symbolically links files necessary to run the model, and
74    copies in the initial ensemble files.  osse should be run from the
75    directory verification/osse/da/inits since it expects the ensemble
76    members to be one directory above.  It also expects to have in its
77    working directory the file iobsloc-003.txt, which contains the
78    locations of the observations.  This file is located in
79    verification/osse/da/inits.
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