1 |
Equilibrium integrations for dissolved inorganic |
2 |
carbon (DIC) and for radiocarbon (C14). |
3 |
================================================ |
4 |
|
5 |
Instructions for using pkg/ptracers for equilibrium DIC |
6 |
and C14 integrations as per OCMIP 2: |
7 |
http://www.cgd.ucar.edu/oce/OCMIP/HOWTO-Abiotic.pdf |
8 |
|
9 |
=============================================== |
10 |
First check that pkg/ptracers works OK by using |
11 |
salinity initial and boundary conditions |
12 |
=============================================== |
13 |
|
14 |
1 ===> get MITgcm code from cvs repository |
15 |
|
16 |
cvs co -r checkpoint57w_post MITgcm_code |
17 |
cvs co -r checkpoint57w_post MITgcm/verification/testreport |
18 |
cvs co -r checkpoint57w_post MITgcm/verification/global_with_exf |
19 |
|
20 |
2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory |
21 |
|
22 |
cd MITgcm |
23 |
cvs co -d ocean_inversion_project MITgcm_contrib/ocean_inversion_project |
24 |
|
25 |
3 ===> compile and link |
26 |
|
27 |
mkdir bin exe |
28 |
cd bin |
29 |
\cp ../verification/global_with_exf/code/* . |
30 |
\cp ../ocean_inversion_project/code_c14/* . |
31 |
../tools/genmake2 |
32 |
make depend |
33 |
make -j |
34 |
\cp mitgcmuv ../exe |
35 |
|
36 |
4 ===> execute |
37 |
|
38 |
cd ../exe |
39 |
\cp ../verification/global_with_exf/input/eedata . |
40 |
\cp ../verification/global_with_exf/input/data.* . |
41 |
\cp ../verification/global_with_exf/input/POLY3.COEFFS . |
42 |
\ln -sf ../verification/global_with_exf/input/*.bin . |
43 |
\cp ../ocean_inversion_project/input/* . |
44 |
\cp ../ocean_inversion_project/input_c14/* . |
45 |
./mitgcmuv >! output.txt |
46 |
|
47 |
5 ===> check that PTRACER output and salinity output are identical. |
48 |
|
49 |
diff PTRACER01.0000000020.data S.0000000020.data |
50 |
diff PTRACER02.0000000020.data S.0000000020.data |
51 |
|
52 |
|
53 |
========================================================== |
54 |
Instructions for carrying out 3000-year quasi-stationary |
55 |
integration using the ecco1x1 configuration on columbia. |
56 |
This assumes that the appropriate libnetcdf.a exists |
57 |
and that it be specified in the genmake2 option file. |
58 |
It also assumes that surface forcing files are available |
59 |
in MITgcm/../iter69 |
60 |
========================================================== |
61 |
|
62 |
module purge |
63 |
module load modules scsl.1.5.0.0 intel-comp.8.1.024 mpt.1.12.0.0 |
64 |
cd MITgcm |
65 |
\rm exe/* bin/* |
66 |
cd bin |
67 |
\cp ../ocean_inversion_project/code_c14/* . |
68 |
\cp SIZE.h.ecco1x1 SIZE.h |
69 |
\cp ptracers_forcing_surf.F.ecco1x1 ptracers_forcing_surf.F |
70 |
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
71 |
make depend |
72 |
make -j |
73 |
\cp mitgcmuv ../exe |
74 |
cd ../exe |
75 |
\cp ../ocean_inversion_project/input_c14/* . |
76 |
\mv data.ecco1x1 data |
77 |
\mv data.ptracers.ecco1x1 data.ptracers |
78 |
\ln -sf ../../iter69/* . |
79 |
qsub job_c14_ecco1x1 |