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dimitri |
1.1 |
Equilibrium integrations for dissolved inorganic |
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carbon (DIC) and for radiocarbon (C14). |
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Instructions for using pkg/ptracers for equilibrium DIC |
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and C14 integrations as per OCMIP 2: |
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http://www.cgd.ucar.edu/oce/OCMIP/HOWTO-Abiotic.pdf |
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=============================================== |
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First check that pkg/ptracers works OK by using |
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salinity initial and boundary conditions |
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=============================================== |
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1 ===> get MITgcm code from cvs repository |
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cvs co -r checkpoint57w_post MITgcm_code |
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cvs co -r checkpoint57w_post MITgcm/verification/testreport |
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cvs co -r checkpoint57w_post MITgcm/verification/global_with_exf |
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2 ===> put MITgcm_contrib/ocean_inversion_project in MITgcm directory |
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cd MITgcm |
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cvs co -d ocean_inversion_project MITgcm_contrib/ocean_inversion_project |
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3 ===> compile and link |
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mkdir bin exe |
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cd bin |
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\cp ../verification/global_with_exf/code/* . |
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\cp ../ocean_inversion_project/code_c14/* . |
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../tools/genmake2 |
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make depend |
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make -j |
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\cp mitgcmuv ../exe |
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4 ===> execute |
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cd ../exe |
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\cp ../verification/global_with_exf/input/eedata . |
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\cp ../verification/global_with_exf/input/data.* . |
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\cp ../verification/global_with_exf/input/POLY3.COEFFS . |
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\ln -sf ../verification/global_with_exf/input/*.bin . |
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\cp ../ocean_inversion_project/input/* . |
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\cp ../ocean_inversion_project/input_c14/* . |
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./mitgcmuv >! output.txt |
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5 ===> check that PTRACER output and salinity output are identical. |
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diff PTRACER01.0000000020.data S.0000000020.data |
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diff PTRACER02.0000000020.data S.0000000020.data |
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========================================================== |
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Instructions for carrying out 3000-year quasi-stationary |
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integration using the ecco1x1 configuration on columbia. |
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This assumes that the appropriate libnetcdf.a exists |
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and that it be specified in the genmake2 option file. |
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It also assumes that surface forcing files are available |
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in MITgcm/../iter69 |
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========================================================== |
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dimitri |
1.2 |
module purge |
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module load modules scsl.1.5.0.0 intel-comp.8.1.024 mpt.1.12.0.0 |
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cd MITgcm |
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\rm exe/* bin/* |
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cd bin |
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\cp ../ocean_inversion_project/code_c14/* . |
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dimitri |
1.1 |
\cp SIZE.h.ecco1x1 SIZE.h |
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\cp ptracers_forcing_surf.F.ecco1x1 ptracers_forcing_surf.F |
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dimitri |
1.2 |
../tools/genmake2 -of ../tools/build_options/linux_ia64_ifort+mpi_altix_nas |
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dimitri |
1.1 |
make depend |
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make -j |
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dimitri |
1.2 |
\cp mitgcmuv ../exe |
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dimitri |
1.1 |
cd ../exe |
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dimitri |
1.2 |
\cp ../ocean_inversion_project/input_c14/* . |
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\mv data.ecco1x1 data |
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\mv data.ptracers.ecco1x1 data.ptracers |
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dimitri |
1.1 |
\ln -sf ../../iter69/* . |
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dimitri |
1.2 |
qsub job_c14_ecco1x1 |
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