| 13 | 
 respective README files in each directory for details. | 
 respective README files in each directory for details. | 
| 14 | 
  | 
  | 
| 15 | 
  | 
  | 
| 16 | 
  | 
 Notes and problems: | 
| 17 | 
  | 
 =================== | 
| 18 | 
  | 
  | 
| 19 | 
  | 
 there is problem generating ECCO_MaskAreaBathy.nc on columbia | 
| 20 | 
  | 
 works OK on nireas | 
| 21 | 
  | 
  | 
| 22 | 
  | 
 variable global_mean_conc in 0D output from mk_output.F is | 
| 23 | 
  | 
 screwed up | 
| 24 | 
  | 
  | 
| 25 | 
  | 
  | 
| 26 | 
  | 
  | 
| 27 | 
 =============================================== | 
 =============================================== | 
| 28 | 
 First check that pkg/ptracers works OK by using | 
 First check that pkg/ptracers works OK by using | 
| 29 | 
 salinity initial and boundary conditions | 
 salinity initial and boundary conditions | 
| 189 | 
  \cp ../ocean_inversion_project/code_ecco1x1/* . | 
  \cp ../ocean_inversion_project/code_ecco1x1/* . | 
| 190 | 
  \cp ../ocean_inversion_project/write_netCDF/*  . | 
  \cp ../ocean_inversion_project/write_netCDF/*  . | 
| 191 | 
  \rm mk_output.F | 
  \rm mk_output.F | 
| 192 | 
  \cp SIZE.h.144 SIZE.h | 
  \cp SIZE.h.96 SIZE.h | 
| 193 | 
  ../tools/genmake2 -of linux_ia64_efc+mpi_altix | 
  ../tools/genmake2 -of linux_ia64_efc+mpi_altix | 
| 194 | 
  make depend | 
  make depend | 
| 195 | 
  make -j 16 | 
  make -j 16 | 
| 203 | 
  | 
  | 
| 204 | 
  | 
  | 
| 205 | 
 ========================================================== | 
 ========================================================== | 
| 206 | 
  | 
 Instructions for generating netcdf output files on columbia | 
| 207 | 
  | 
 ========================================================== | 
| 208 | 
  | 
  | 
| 209 | 
  | 
 cd ocean_inversion_project/write_netCDF | 
| 210 | 
  | 
 setenv F_UFMTENDIAN big | 
| 211 | 
  | 
  | 
| 212 | 
  | 
 (check that defaults in  mk_output.F are appropriate) | 
| 213 | 
  | 
  | 
| 214 | 
  | 
 efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \ | 
| 215 | 
  | 
      handle_errors.F write_nc_basisfnctns.F \ | 
| 216 | 
  | 
      write_nc_diag_0D.F write_nc_diag_2D.F \ | 
| 217 | 
  | 
      -I/u/menemenl/software/netcdf-3.5.0/include \ | 
| 218 | 
  | 
      -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf | 
| 219 | 
  | 
 ./a.out | 
| 220 | 
  | 
  | 
| 221 | 
  | 
  | 
| 222 | 
  | 
 ========================================================== | 
| 223 | 
 Instructions for generating netcdf output files on orion | 
 Instructions for generating netcdf output files on orion | 
| 224 | 
 ========================================================== | 
 ========================================================== | 
| 225 | 
  | 
  | 
| 233 | 
      write_nc_diag_0D.F write_nc_diag_2D.F \ | 
      write_nc_diag_0D.F write_nc_diag_2D.F \ | 
| 234 | 
      -I/u2/dmenem/software/netcdf-3.5.0/include \ | 
      -I/u2/dmenem/software/netcdf-3.5.0/include \ | 
| 235 | 
      -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf | 
      -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf | 
| 236 | 
 a.out | 
 ./a.out | 
| 237 | 
  | 
  | 
| 238 | 
  | 
  | 
| 239 | 
 ====================================================== | 
 ====================================================== |