--- MITgcm_contrib/ocean_inversion_project/README	2004/09/30 23:45:07	1.21
+++ MITgcm_contrib/ocean_inversion_project/README	2004/11/04 13:22:09	1.26
@@ -20,8 +20,6 @@
 
 1 ===> get MITgcm code from cvs repository
 
- CVSROOT=:pserver:cvsanon@mitgcm.org:/u/gcmpack
- cvs login ( CVS password: cvsanon )
  cvs co -r checkpoint51n_branch MITgcm_code
  cvs co -r checkpoint51n_branch MITgcm/verification/testreport
  cvs co -r checkpoint51n_branch MITgcm/verification/global_with_exf
@@ -35,26 +33,27 @@
 
  mkdir bin exe
  cd bin
- cp ../verification/global_with_exf/code/* .
- cp ../ocean_inversion_project/code/* .
- rm ptracers_*.F PTRACERS_OPTIONS.h
+ \cp ../verification/global_with_exf/code/* .
+ \cp ../ocean_inversion_project/code/* .
+ \rm ptracers_*.F PTRACERS_OPTIONS.h
  ../tools/genmake2
-   (on orion: ../tools/genmake2 -of linux_ia64_efc+mpi)
+   (on orion:    ../tools/genmake2 -of linux_ia64_efc+mpi       )
+   (on columbia: ../tools/genmake2 -of linux_ia64_efc+mpi_altix )
  make depend
- make
+ make -j 16
 
 4 ===> execute
 
  cd ../exe
- cp ../verification/global_with_exf/input/eedata .
- cp ../verification/global_with_exf/input/data.* .
- cp ../verification/global_with_exf/input/POLY3.COEFFS .
- ln -sf ../verification/global_with_exf/input/*.bin .
- cp ../ocean_inversion_project/input/* .
- cp data.test data
- cp data.ptracers.test data.ptracers
- mitgcmuv > output.txt
-  
+ \cp ../verification/global_with_exf/input/eedata .
+ \cp ../verification/global_with_exf/input/data.* .
+ \cp ../verification/global_with_exf/input/POLY3.COEFFS .
+ \ln -sf ../verification/global_with_exf/input/*.bin .
+ \cp ../ocean_inversion_project/input/* .
+ \cp data.test data
+ \cp data.ptracers.test data.ptracers
+ ./mitgcmuv >! output.txt
+
 5 ===> check that PTRACER output and salinity output are identical.
 
  diff PTRACER01.0000000020.001.001.data S.0000000020.001.001.data
@@ -93,6 +92,7 @@
  mpirun -np 24 dplace -s1 mitgcmuv < /dev/null > & ! errlog &
    (on orion: qsub job.orion)
 
+
 ==========================================================
 MPI instructions for carrying out time-dependent, 1765-2005,
 anthropogenic carbon perturbation tracer experiments using
@@ -161,7 +161,52 @@
  mitgcmuv > output .txt &
 
 
-======================================================
+==========================================================
+Instructions for carrying out time-dependent, 1765-2005,
+anthropogenic carbon perturbation tracer experiments using
+the ecco1x1 configuration and netcdf output on columbia.
+This assumes that the appropriate libnetcdf.a exists
+and that it be specified in the genmake2 option file.
+It also assumes that surface forcing files are available
+in /nobackup2/menemenl/ocmip/iter69
+==========================================================
+
+ cd MITgcm/exe
+ \rm *
+ cd ../bin
+ \rm *
+ \cp ../ocean_inversion_project/code_ecco1x1/* .
+ \cp ../ocean_inversion_project/write_netCDF/*  .
+ \rm mk_output.F
+ \cp SIZE.h.96 SIZE.h
+ ../tools/genmake2 -of linux_ia64_efc+mpi_altix
+ make depend
+ make -j 16
+ cd ../exe
+ \cp ../ocean_inversion_project/input_ecco1x1/* .
+ ln -sf ../../iter69/* .
+ ln -sf ../ocean_inversion_project/region_mask/30reg_regionmask.bin .
+ ln -sf ../ocean_inversion_project/takahashi/taka02_montlhy.bin .
+ ln -sf ../ocean_inversion_project/atm_co2/splco2_cis92a.dat .
+ qsub job01
+
+
+==========================================================
+Instructions for generating netcdf output files on columbia
+==========================================================
+
+cd ocean_inversion_project/write_netCDF
+setenv F_UFMTENDIAN big
+
+(check that defaults in  mk_output.F are appropriate)
+
+efc -W0 -WB mk_output.F write_nc_phys.F nc_util.F \
+     handle_errors.F write_nc_basisfnctns.F \
+     write_nc_diag_0D.F write_nc_diag_2D.F \
+     -I/u/menemenl/software/netcdf-3.5.0/include \
+     -L/u/menemenl/software/netcdf-3.5.0/lib -lnetcdf
+./a.out
+
 
 ==========================================================
 Instructions for generating netcdf output files on orion
@@ -177,7 +222,7 @@
      write_nc_diag_0D.F write_nc_diag_2D.F \
      -I/u2/dmenem/software/netcdf-3.5.0/include \
      -L/u2/dmenem/software/netcdf-3.5.0/lib -lnetcdf
-a.out
+./a.out
 
 
 ======================================================